jgi.p|Nanoce1779_2|576832, mRNA_290 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576832
Unique NamemRNA_290
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length544
Alignment locationscaffold_3:717019..717562 +

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Properties
Property NameValue
TranscriptId576918
TrackFilteredModels2
ProteinId576832
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:717019..717562 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576832gene_290Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576832mRNA_290-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_290CDS_290Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_290 ID=mRNA_290|Name=jgi.p|Nanoce1779_2|576832|organism=Nannochloropsis oceanica|type=mRNA|length=544bp
ATGAGGGGCGCATTTGGAGGGAGGGATGGTCGGGATCGTGATAGCGGTGG
TGGTGGGCGGAGGGGAGACAGAGGAGAAGGAGGCAGGGGCGGTGGTCGAG
GAGGAGGGTTTGGGTCTCGAGGAGGCGGAGGCCCTCCTCCTTCCTCCCGG
CAAGATTACGATCGACGCTATGGCCCTGGGCGAGAGGGTGAGTGGGGAGG
AGGTGGTGGTCCAGGCGGGTGGGAGCAGCAGGGTCCGCGTCACCTCCCTC
CTCCCATGGCCTTGCCCCCTCCCACTCATCTTGGTCTAGTGCCGCCCATG
CCCTACGACCATCGAGGAGGCCTTCCCCCTGCTGCTGCTCCTGGTGCTGC
AGGGGGAGGGTACTATCCCCCCCCGGGAGGAGATATGCGCTACAATGGGC
AACAACCCGGCATGCCCCCCCTCCCGCCGGGACCATACCCCGGTGCCCCC
CCCCCTGGCTTCAATTACCCTCCTGGCCTTCCTCCCCCTTACGGCGCCCC
CCTCCCCTATCAGGAGCAACAGCAGCCACAGCAGCCACAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|576832

>mRNA_290-protein ID=mRNA_290-protein|Name=jgi.p|Nanoce1779_2|576832|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MRGAFGGRDGRDRDSGGGGRRGDRGEGGRGGGRGGGFGSRGGGGPPPSSR
QDYDRRYGPGREGEWGGGGGPGGWEQQGPRHLPPPMALPPPTHLGLVPPM
PYDHRGGLPPAAAPGAAGGGYYPPPGGDMRYNGQQPGMPPLPPGPYPGAP
PPGFNYPPGLPPPYGAPLPYQEQQQPQQPQQ
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mRNA from alignment at scaffold_3:717019..717562+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_290 ID=mRNA_290|Name=jgi.p|Nanoce1779_2|576832|organism=Nannochloropsis oceanica|type=mRNA|length=544bp|location=Sequence derived from alignment at scaffold_3:717019..717562+ (Nannochloropsis oceanica)
ATGAGGGGCGCATTTGGAGGGAGGGATGGTCGGGATCGTGATAGCGGTGG
TGGTGGGCGGAGGGGAGACAGAGGAGAAGGAGGCAGGGGCGGTGGTCGAG
GAGGAGGGTTTGGGTCTCGAGGAGGCGGAGGCCCTCCTCCTTCCTCCCGG
CAAGATTACGATCGACGCTATGGCCCTGGGCGAGAGGGTGAGTGGGGAGG
AGGTGGTGGTCCAGGCGGGTGGGAGCAGCAGGGTCCGCGTCACCTCCCTC
CTCCCATGGCCTTGCCCCCTCCCACTCATCTTGGTCTAGTGCCGCCCATG
CCCTACGACCATCGAGGAGGCCTTCCCCCTGCTGCTGCTCCTGGTGCTGC
AGGGGGAGGGTACTATCCCCCCCCGGGAGGAGATATGCGCTACAATGGGC
AACAACCCGGCATGCCCCCCCTCCCGCCGGGACCATACCCCGGTGCCCCC
CCCCCTGGCTTCAATTACCCTCCTGGCCTTCCTCCCCCTTACGGCGCCCC
CCTCCCCTATCAGGAGCAACAGCAGCCACAGCAGCCACAGCAGC
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Coding sequence (CDS) from alignment at scaffold_3:717019..717562+

>mRNA_290 ID=mRNA_290|Name=jgi.p|Nanoce1779_2|576832|organism=Nannochloropsis oceanica|type=CDS|length=544bp|location=Sequence derived from alignment at scaffold_3:717019..717562+ (Nannochloropsis oceanica)
ATGAGGGGCGCATTTGGAGGGAGGGATGGTCGGGATCGTGATAGCGGTGG
TGGTGGGCGGAGGGGAGACAGAGGAGAAGGAGGCAGGGGCGGTGGTCGAG
GAGGAGGGTTTGGGTCTCGAGGAGGCGGAGGCCCTCCTCCTTCCTCCCGG
CAAGATTACGATCGACGCTATGGCCCTGGGCGAGAGGGTGAGTGGGGAGG
AGGTGGTGGTCCAGGCGGGTGGGAGCAGCAGGGTCCGCGTCACCTCCCTC
CTCCCATGGCCTTGCCCCCTCCCACTCATCTTGGTCTAGTGCCGCCCATG
CCCTACGACCATCGAGGAGGCCTTCCCCCTGCTGCTGCTCCTGGTGCTGC
AGGGGGAGGGTACTATCCCCCCCCGGGAGGAGATATGCGCTACAATGGGC
AACAACCCGGCATGCCCCCCCTCCCGCCGGGACCATACCCCGGTGCCCCC
CCCCCTGGCTTCAATTACCCTCCTGGCCTTCCTCCCCCTTACGGCGCCCC
CCTCCCCTATCAGGAGCAACAGCAGCCACAGCAGCCACAGCAGC
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Synonyms
Publications