jgi.p|Nanoce1779_2|636458, mRNA_29 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|636458
Unique Name	mRNA_29
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	762
Alignment location	scaffold_3:89414..90784 -

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Properties


Property Name	Value
TranscriptId	636544
Track	FilteredModels2
ProteinId	636458

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:89414..90784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636458	gene_29	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|636458	mRNA_29-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_29	CDS_29	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:89414..90784-
coding sequence from alignment at scaffold_3:89414..90784-

mRNA sequence

>mRNA_29 ID=mRNA_29|Name=jgi.p|Nanoce1779_2|636458|organism=Nannochloropsis oceanica|type=mRNA|length=762bp
ATGCACGATTTCAGACGTTTTCTTCGGAAAGAATATTTGCAACGCGTGGC
TGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAAGGAGGCGG
GTCAAAAGCCACAAGAGAAAGGCCCGGATGTATCTTCATGGACACTCAAT
GACATCTTGGAACTGGGCGGGGCATGCGTGGAGGGACGTGGGCGGTTTAA
TGTGTATTGCGAAGAGACTGGCTCGTGGGATGTGTGGACGAAGGAGTATG
TTGACGCCCTTGCGGCGTATCTCACGAAACTCGGGGCTGGCACGGGTGCC
TTGGCCTATCACCTCAAGCAACGCCTCGACCCCTCCCTGGTCACCTACAT
CGCAACCGACCGCGAACCGAGCCCTGTTCCCCTGCCTCCCTCCAGCCCTC
CCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCTTTGTGGAGGAGCTTTCG
TGGGATAAAGCCTTGTCGCGCTACCCAGAGGCGGCTATCGTCGTTTGTGC
GTGGATGCCGATGGGGGAGGACTGGACGGAAAGCATGAGGCAAGGGGGGA
GGAAGGGAAGGAGGGGGATCCAGGAATACATCTCGATCGGAGAGCACGGG
GAGCAGGCGGGATGTGGAGACCCGGTCAAGACGTGGGGGGCCGGTGGGTT
GGGGGATGGATGGAGTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCG
ATGGCTTTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCA
CGGAAAAAATAA

protein sequence of jgi.p|Nanoce1779_2|636458

>mRNA_29-protein ID=mRNA_29-protein|Name=jgi.p|Nanoce1779_2|636458|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MHDFRRFLRKEYLQRVAAAEATVGLAVGGGKEAGQKPQEKGPDVSSWTLN
DILELGGACVEGRGRFNVYCEETGSWDVWTKEYVDALAAYLTKLGAGTGA
LAYHLKQRLDPSLVTYIATDREPSPVPLPPSSPPSLLPSLLAHPFVEELS
WDKALSRYPEAAIVVCAWMPMGEDWTESMRQGGRKGRRGIQEYISIGEHG
EQAGCGDPVKTWGAGGLGDGWSASLGGVRPWEADGFSAHEEEGLGQWQWS
RKK*

mRNA from alignment at scaffold_3:89414..90784-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_29 ID=mRNA_29|Name=jgi.p|Nanoce1779_2|636458|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at scaffold_3:89414..90784- (Nannochloropsis oceanica)
ATGCACGATTTCAGACGTTTTCTTCGGAAAGAATATTTGCAACGCGTGGC
TGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAAGGAGGCGG
GTCAAAAGCCACAAGTAGCAGACGCATCAGCACCACCCGCACCAACACAA
TCAATCCATCCGCCCTGGGGCATGGATATCATATCCGACAAGGATGGATT
GAAAGCAACTCGCCTCCCGACCTATCAAGAACTCGTCGACTTTTTCCTCC
TTCATGATTGGAACCGTCGCCCTGGACCCCACAGCGCCGCATTTGAAGGA
GTGAAGCGTCAAGCCCTCCTCCGCACACTTCAGGAGAAAGGCCCGGATGT
ATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGCATGCGTGG
AGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCTCGTGGGAT
GTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTCACGAAACG
TGCCCGCGAGCTCGCGTCCTCCCTCCCTTCCTCCTTCCCTTCCTCCCTCC
CCTCCTCCCCTCTTTCTCTCCCTCTTCTCGTCTTGGAAGTCGGGGCTGGC
ACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCCTCCCTGGT
CACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCTGCCTCCCT
CCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCTTTGTGGAG
GAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCGGCTATCGT
CGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAGCATGAGGC
AAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCTCGATCGGA
GAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACGTGGGGGGC
CGGTGGGTTGGGGGATGGATGGAGTGAGGGAAGGAGGGGGTGCAGGGCTT
ATTTTATGTGAAAAGGAGATTTGCATGTCTTCACATCCAATCAGTGTATT
TATAATTCATTTGTCCTCCCTCACTCCCTTCCTCCGACCCAGGTGCGTCC
CTCGGCGGCGTGAGGCCTTGGGAGGCCGATGGCTTTAGTGCCCACGAAGA
AGAGGGGCTGGGTCAATGGCAGTGGTCACGGTATGATGGGAAACAATTCG
CTCGGAACTCCGCCACAATCTGCTTTCGACGAGGGGGTAGTGGAGGGAGA
GAGGGAGGGAGAGAGGGAGAGAGGAGGGGTGGGAGGGGGGGAGGGAGGAA
TGCATATAGGTAGGCAGTTTGAGGTTGTCTTAAGAACGAATTACGTACTA
CACTACAACAGGAAAAAATAA

Coding sequence (CDS) from alignment at scaffold_3:89414..90784-

>mRNA_29 ID=mRNA_29|Name=jgi.p|Nanoce1779_2|636458|organism=Nannochloropsis oceanica|type=CDS|length=3810bp|location=Sequence derived from alignment at scaffold_3:89414..90784- (Nannochloropsis oceanica)
GAAAAAATAAGTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGG
CTTTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGTC
GGGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCC
CTCCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCC
TGCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCC
TTTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGC
GGCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAA
GCATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATC
TCGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGAC
GTGGGGGGCCGGTGGGTTGGGGGATGGATGGAGAGAAAGGCCCGGATGTA
TCTTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGCATGCGTGGA
GGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCTCGTGGGATG
TGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTCACGAAACAT
GCACGATTTCAGACGTTTTCTTCGGAAAGAATATTTGCAACGCGTGGCTG
CTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAAGGAGGCGGGT
CAAAAGCCACAAGAAAAAATAAGTGCGTCCCTCGGCGGCGTGAGGCCTTG
GGAGGCCGATGGCTTTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGC
AGTGGTCACGTCGGGGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCA
ACGCCTCGACCCCTCCCTGGTCACCTACATCGCAACCGACCGCGAACCGA
GCCCTGTTCCCCTGCCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTC
CTCGCCCACCCCTTTGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCG
CTACCCAGAGGCGGCTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGG
ACTGGACGGAAAGCATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATC
CAGGAATACATCTCGATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGA
CCCGGTCAAGACGTGGGGGGCCGGTGGGTTGGGGGATGGATGGAGAGAAA
GGCCCGGATGTATCTTCATGGACACTCAATGACATCTTGGAACTGGGCGG
GGCATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTG
GCTCGTGGGATGTGTGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTAT
CTCACGAAACATGCACGATTTCAGACGTTTTCTTCGGAAAGAATATTTGC
AACGCGTGGCTGCTGCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGC
AAGGAGGCGGGTCAAAAGCCACAAGAAAAAATAAGTGCGTCCCTCGGCGG
CGTGAGGCCTTGGGAGGCCGATGGCTTTAGTGCCCACGAAGAAGAGGGGC
TGGGTCAATGGCAGTGGTCACGTCGGGGCTGGCACGGGTGCCTTGGCCTA
TCACCTCAAGCAACGCCTCGACCCCTCCCTGGTCACCTACATCGCAACCG
ACCGCGAACCGAGCCCTGTTCCCCTGCCTCCCTCCAGCCCTCCCTCCCTC
CTTCCCTCCCTCCTCGCCCACCCCTTTGTGGAGGAGCTTTCGTGGGATAA
AGCCTTGTCGCGCTACCCAGAGGCGGCTATCGTCGTTTGTGCGTGGATGC
CGATGGGGGAGGACTGGACGGAAAGCATGAGGCAAGGGGGGAGGAAGGGA
AGGAGGGGGATCCAGGAATACATCTCGATCGGAGAGCACGGGGAGCAGGC
GGGATGTGGAGACCCGGTCAAGACGTGGGGGGCCGGTGGGTTGGGGGATG
GATGGAGAGAAAGGCCCGGATGTATCTTCATGGACACTCAATGACATCTT
GGAACTGGGCGGGGCATGCGTGGAGGGACGTGGGCGGTTTAATGTGTATT
GCGAAGAGACTGGCTCGTGGGATGTGTGGACGAAGGAGTATGTTGACGCC
CTTGCGGCGTATCTCACGAAACATGCACGATTTCAGACGTTTTCTTCGGA
AAGAATATTTGCAACGCGTGGCTGCTGCAGAGGCGACGGTTGGCTTGGCT
GTAGGAGGGGGCAAGGAGGCGGGTCAAAAGCCACAAGAAAAAATAAGTGC
GTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGGCTTTAGTGCCCACG
AAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGTCGGGGCTGGCACGGG
TGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCCTCCCTGGTCACCT
ACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCTGCCTCCCTCCAGC
CCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCTTTGTGGAGGAGCT
TTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCGGCTATCGTCGTTT
GTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAGCATGAGGCAAGGG
GGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCTCGATCGGAGAGCA
CGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACGTGGGGGGCCGGTG
GGTTGGGGGATGGATGGAGAGAAAGGCCCGGATGTATCTTCATGGACACT
CAATGACATCTTGGAACTGGGCGGGGCATGCGTGGAGGGACGTGGGCGGT
TTAATGTGTATTGCGAAGAGACTGGCTCGTGGGATGTGTGGACGAAGGAG
TATGTTGACGCCCTTGCGGCGTATCTCACGAAACATGCACGATTTCAGAC
GTTTTCTTCGGAAAGAATATTTGCAACGCGTGGCTGCTGCAGAGGCGACG
GTTGGCTTGGCTGTAGGAGGGGGCAAGGAGGCGGGTCAAAAGCCACAAGA
AAAAATAAGTGCGTCCCTCGGCGGCGTGAGGCCTTGGGAGGCCGATGGCT
TTAGTGCCCACGAAGAAGAGGGGCTGGGTCAATGGCAGTGGTCACGTCGG
GGCTGGCACGGGTGCCTTGGCCTATCACCTCAAGCAACGCCTCGACCCCT
CCCTGGTCACCTACATCGCAACCGACCGCGAACCGAGCCCTGTTCCCCTG
CCTCCCTCCAGCCCTCCCTCCCTCCTTCCCTCCCTCCTCGCCCACCCCTT
TGTGGAGGAGCTTTCGTGGGATAAAGCCTTGTCGCGCTACCCAGAGGCGG
CTATCGTCGTTTGTGCGTGGATGCCGATGGGGGAGGACTGGACGGAAAGC
ATGAGGCAAGGGGGGAGGAAGGGAAGGAGGGGGATCCAGGAATACATCTC
GATCGGAGAGCACGGGGAGCAGGCGGGATGTGGAGACCCGGTCAAGACGT
GGGGGGCCGGTGGGTTGGGGGATGGATGGAGAGAAAGGCCCGGATGTATC
TTCATGGACACTCAATGACATCTTGGAACTGGGCGGGGCATGCGTGGAGG
GACGTGGGCGGTTTAATGTGTATTGCGAAGAGACTGGCTCGTGGGATGTG
TGGACGAAGGAGTATGTTGACGCCCTTGCGGCGTATCTCACGAAACATGC
ACGATTTCAGACGTTTTCTTCGGAAAGAATATTTGCAACGCGTGGCTGCT
GCAGAGGCGACGGTTGGCTTGGCTGTAGGAGGGGGCAAGGAGGCGGGTCA
AAAGCCACAA

Synonyms

Publications