jgi.p|Nanoce1779_2|638083, mRNA_2898 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638083
Unique Name	mRNA_2898
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2094
Alignment location	scaffold_7:198540..200633 -

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Properties


Property Name	Value
TranscriptId	638169
Track	FilteredModels2
ProteinId	638083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:198540..200633 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638083	gene_2898	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2898	CDS_2898	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638083	mRNA_2898-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:198540..200633-
coding sequence from alignment at scaffold_7:198540..200633-

mRNA sequence

>mRNA_2898 ID=mRNA_2898|Name=jgi.p|Nanoce1779_2|638083|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp
ATGATAAGACAACGATATCAAGGAAGAAGAAGTGCCGGCCTCATTACAAG
CGGCAGCCCCATTGACCCTACCGACACCACCCCAACAAACATCCTCATCA
TTGGCAACGGCGGCCGGGAATACGCTCTTGCCGAATCTCTGCTAAGGGTT
TCCACGCCGCGAAAAATATACGTTGCCCCGGGCAACGCTGGTACGCAGCA
GCTTTTTCCTCCCCGGGTCTTAAATGTACCCGAACTCAATGTCAACGACG
GGGAGGACATCGTGGCTTTCGCCCGCAAAGAGGCCATTGATCTTGTCGTG
GTCGGGCCTGAGGGCCCTCTAGTTGGAGGACTGGGAGATCAATTACGCGA
GAAGGGCATACCATGTTTTGGGCCCAATGCGGCCGCTGCCCGGTTGGAAG
GAAGCAAGGCCTGGGCTAAGGAATTTATGCAGCGTCACCATATCCCCACC
GCTGTCCACGCCACGTTTTCGGACTTCGCCACCGCAGGAGACTATGTGCA
ACAGCACACATTGCCGGTGGTCATCAAGGTATCAAGCTTGGCCGGAGGGA
AGGGCGTGACAGTGGCAGCCACGTATGGGGAGGCCCTGGCAGCTTTAGAG
GCAATTATGGGGCCAGCAGCCGTGTTCGGCATCGAGGCAGGGAGGGAGGT
CGTGGTGGAAGAATGTTTAGTGGGAGACGAAGTATCAGTCATGGCGATGT
GTGATGGAAATAGGGTGGTGACGTGCTTGCCATGTGCCCGTGATTTTAAA
CGGTTGTTGGACAGCGACAAAGGCCCAAATACAGGAGGGATGGGTTCCAT
CGCCCCTGTCCCTGGTTTAACGCCTGCTGTCGAAAGTAAGATGCGTGATA
TTTTGCAACAGGTAGTAGAGGGGATGAAGGAGGAGGGTCATCCGTATCAT
GGGGTATTGTATGGGGGGTTCATGCTCACGAGGAAGGAGGGAGGGAAGGA
AGAGGGGTGGGAGGAGGAGAAGAGAGAGCCAAAGGTGCTGGAGTTTAACT
GTCGATTCGGTGACCCCGAGACGCAGTCTCTCCTACCCTTGTTACCTTCA
AACACAAGCCTGGCAGCTTTAATGCTTCAGTGCGTGCAAGGAGCGAGCCG
CGAAACAGTTGCAGAAAAGGGAAGTGGGACAGAGGACGCAGCGTGGGAGG
GATTTGCGGCCACCGTGATCGCCGCCTCCGAAAGCTACCCAACCTCATCT
TGGCCCATAAAAGCACACATTATTCATGGCCTACCGCAGGCGGCGTGTGT
CCCAGGAGTGCATAGCGTGGTGCATGCAGGGACAGTCAGGAAAGTCCTCG
CCAACGGCGCCCGCGTGATGACCGTGTCCGGCGGGCGCGTCCTCGGAGTG
ACAGGCAAAGCCTCCACGTTGCGTCTGGCAATCCTTCAAGCCTATCATGG
TCTAAGTGAAATTTTTTTTCAGGGCATGCAGTACAGGACGGACATTGGCG
CAGATGCGGTTAGGTCGGCGCGCGCCCCGGTGCGGGTGGCCGTGCTGGGT
TCCACGAAGGGGACAAGCATCTTGCCTTTACTAAAAGGTAAACCTGGTCA
GTATGATGTGGTGCTTGTCTTATCGAACAAAGAGCTGGAGAATGGATTGT
TGGAGAATGCACGGGCCGCGGGTGTGAAGGATTGTCGGTATGTGGGTGGG
GAAGGGGAAGGAGGCAAAGAGGCTATGGAGAAGATTGAGGTCGCCATGGA
GGAAGCTCAAGCAGAAGTCCTCCTTTTGAATGGATACAATCGAATCTTGT
CACCGCGTTTGGTGCGAATTTTACGAGGTCGATGTTTGAATGTCCACCCT
TCGTTACTGCCTGATTTTGCGGGACATTTTGACCTGGCTGTGCATCAAGC
GGTCTTGGACGCAAAGAGGACTCAAAGTGGTTGCACGGTTCATTTTGTTA
CAGACGACGTGGATCAGGGCCCGGTGTTGGTGCAAAAAACATGCGTGGTT
GAACCGGGTGTGGACACGGCAGCGATGCTCAAGGCCAAGGTACAGGCCTT
GGAGACGGAGGCGTGGGAAGAGGCTTTGCGGGTGTACCAAGAGGACTTGC
CGAGGGTGACGCAGACGATTATGGCCATGGGAGTGAAGCGATAG

protein sequence of jgi.p|Nanoce1779_2|638083

>mRNA_2898-protein ID=mRNA_2898-protein|Name=jgi.p|Nanoce1779_2|638083|organism=Nannochloropsis oceanica|type=polypeptide|length=698bp
MIRQRYQGRRSAGLITSGSPIDPTDTTPTNILIIGNGGREYALAESLLRV
STPRKIYVAPGNAGTQQLFPPRVLNVPELNVNDGEDIVAFARKEAIDLVV
VGPEGPLVGGLGDQLREKGIPCFGPNAAAARLEGSKAWAKEFMQRHHIPT
AVHATFSDFATAGDYVQQHTLPVVIKVSSLAGGKGVTVAATYGEALAALE
AIMGPAAVFGIEAGREVVVEECLVGDEVSVMAMCDGNRVVTCLPCARDFK
RLLDSDKGPNTGGMGSIAPVPGLTPAVESKMRDILQQVVEGMKEEGHPYH
GVLYGGFMLTRKEGGKEEGWEEEKREPKVLEFNCRFGDPETQSLLPLLPS
NTSLAALMLQCVQGASRETVAEKGSGTEDAAWEGFAATVIAASESYPTSS
WPIKAHIIHGLPQAACVPGVHSVVHAGTVRKVLANGARVMTVSGGRVLGV
TGKASTLRLAILQAYHGLSEIFFQGMQYRTDIGADAVRSARAPVRVAVLG
STKGTSILPLLKGKPGQYDVVLVLSNKELENGLLENARAAGVKDCRYVGG
EGEGGKEAMEKIEVAMEEAQAEVLLLNGYNRILSPRLVRILRGRCLNVHP
SLLPDFAGHFDLAVHQAVLDAKRTQSGCTVHFVTDDVDQGPVLVQKTCVV
EPGVDTAAMLKAKVQALETEAWEEALRVYQEDLPRVTQTIMAMGVKR*

mRNA from alignment at scaffold_7:198540..200633-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2898 ID=mRNA_2898|Name=jgi.p|Nanoce1779_2|638083|organism=Nannochloropsis oceanica|type=mRNA|length=2094bp|location=Sequence derived from alignment at scaffold_7:198540..200633- (Nannochloropsis oceanica)
ATGATAAGACAACGATATCAAGGAAGAAGAAGTGCCGGCCTCATTACAAG
CGGCAGCCCCATTGACCCTACCGACACCACCCCAACAAACATCCTCATCA
TTGGCAACGGCGGCCGGGAATACGCTCTTGCCGAATCTCTGCTAAGGGTT
TCCACGCCGCGAAAAATATACGTTGCCCCGGGCAACGCTGGTACGCAGCA
GCTTTTTCCTCCCCGGGTCTTAAATGTACCCGAACTCAATGTCAACGACG
GGGAGGACATCGTGGCTTTCGCCCGCAAAGAGGCCATTGATCTTGTCGTG
GTCGGGCCTGAGGGCCCTCTAGTTGGAGGACTGGGAGATCAATTACGCGA
GAAGGGCATACCATGTTTTGGGCCCAATGCGGCCGCTGCCCGGTTGGAAG
GAAGCAAGGCCTGGGCTAAGGAATTTATGCAGCGTCACCATATCCCCACC
GCTGTCCACGCCACGTTTTCGGACTTCGCCACCGCAGGAGACTATGTGCA
ACAGCACACATTGCCGGTGGTCATCAAGGTATCAAGCTTGGCCGGAGGGA
AGGGCGTGACAGTGGCAGCCACGTATGGGGAGGCCCTGGCAGCTTTAGAG
GCAATTATGGGGCCAGCAGCCGTGTTCGGCATCGAGGCAGGGAGGGAGGT
CGTGGTGGAAGAATGTTTAGTGGGAGACGAAGTATCAGTCATGGCGATGT
GTGATGGAAATAGGGTGGTGACGTGCTTGCCATGTGCCCGTGATTTTAAA
CGGTTGTTGGACAGCGACAAAGGCCCAAATACAGGAGGGATGGGTTCCAT
CGCCCCTGTCCCTGGTTTAACGCCTGCTGTCGAAAGTAAGATGCGTGATA
TTTTGCAACAGGTAGTAGAGGGGATGAAGGAGGAGGGTCATCCGTATCAT
GGGGTATTGTATGGGGGGTTCATGCTCACGAGGAAGGAGGGAGGGAAGGA
AGAGGGGTGGGAGGAGGAGAAGAGAGAGCCAAAGGTGCTGGAGTTTAACT
GTCGATTCGGTGACCCCGAGACGCAGTCTCTCCTACCCTTGTTACCTTCA
AACACAAGCCTGGCAGCTTTAATGCTTCAGTGCGTGCAAGGAGCGAGCCG
CGAAACAGTTGCAGAAAAGGGAAGTGGGACAGAGGACGCAGCGTGGGAGG
GATTTGCGGCCACCGTGATCGCCGCCTCCGAAAGCTACCCAACCTCATCT
TGGCCCATAAAAGCACACATTATTCATGGCCTACCGCAGGCGGCGTGTGT
CCCAGGAGTGCATAGCGTGGTGCATGCAGGGACAGTCAGGAAAGTCCTCG
CCAACGGCGCCCGCGTGATGACCGTGTCCGGCGGGCGCGTCCTCGGAGTG
ACAGGCAAAGCCTCCACGTTGCGTCTGGCAATCCTTCAAGCCTATCATGG
TCTAAGTGAAATTTTTTTTCAGGGCATGCAGTACAGGACGGACATTGGCG
CAGATGCGGTTAGGTCGGCGCGCGCCCCGGTGCGGGTGGCCGTGCTGGGT
TCCACGAAGGGGACAAGCATCTTGCCTTTACTAAAAGGTAAACCTGGTCA
GTATGATGTGGTGCTTGTCTTATCGAACAAAGAGCTGGAGAATGGATTGT
TGGAGAATGCACGGGCCGCGGGTGTGAAGGATTGTCGGTATGTGGGTGGG
GAAGGGGAAGGAGGCAAAGAGGCTATGGAGAAGATTGAGGTCGCCATGGA
GGAAGCTCAAGCAGAAGTCCTCCTTTTGAATGGATACAATCGAATCTTGT
CACCGCGTTTGGTGCGAATTTTACGAGGTCGATGTTTGAATGTCCACCCT
TCGTTACTGCCTGATTTTGCGGGACATTTTGACCTGGCTGTGCATCAAGC
GGTCTTGGACGCAAAGAGGACTCAAAGTGGTTGCACGGTTCATTTTGTTA
CAGACGACGTGGATCAGGGCCCGGTGTTGGTGCAAAAAACATGCGTGGTT
GAACCGGGTGTGGACACGGCAGCGATGCTCAAGGCCAAGGTACAGGCCTT
GGAGACGGAGGCGTGGGAAGAGGCTTTGCGGGTGTACCAAGAGGACTTGC
CGAGGGTGACGCAGACGATTATGGCCATGGGAGTGAAGCGATAG

Coding sequence (CDS) from alignment at scaffold_7:198540..200633-

>mRNA_2898 ID=mRNA_2898|Name=jgi.p|Nanoce1779_2|638083|organism=Nannochloropsis oceanica|type=CDS|length=2094bp|location=Sequence derived from alignment at scaffold_7:198540..200633- (Nannochloropsis oceanica)
ATGATAAGACAACGATATCAAGGAAGAAGAAGTGCCGGCCTCATTACAAG
CGGCAGCCCCATTGACCCTACCGACACCACCCCAACAAACATCCTCATCA
TTGGCAACGGCGGCCGGGAATACGCTCTTGCCGAATCTCTGCTAAGGGTT
TCCACGCCGCGAAAAATATACGTTGCCCCGGGCAACGCTGGTACGCAGCA
GCTTTTTCCTCCCCGGGTCTTAAATGTACCCGAACTCAATGTCAACGACG
GGGAGGACATCGTGGCTTTCGCCCGCAAAGAGGCCATTGATCTTGTCGTG
GTCGGGCCTGAGGGCCCTCTAGTTGGAGGACTGGGAGATCAATTACGCGA
GAAGGGCATACCATGTTTTGGGCCCAATGCGGCCGCTGCCCGGTTGGAAG
GAAGCAAGGCCTGGGCTAAGGAATTTATGCAGCGTCACCATATCCCCACC
GCTGTCCACGCCACGTTTTCGGACTTCGCCACCGCAGGAGACTATGTGCA
ACAGCACACATTGCCGGTGGTCATCAAGGTATCAAGCTTGGCCGGAGGGA
AGGGCGTGACAGTGGCAGCCACGTATGGGGAGGCCCTGGCAGCTTTAGAG
GCAATTATGGGGCCAGCAGCCGTGTTCGGCATCGAGGCAGGGAGGGAGGT
CGTGGTGGAAGAATGTTTAGTGGGAGACGAAGTATCAGTCATGGCGATGT
GTGATGGAAATAGGGTGGTGACGTGCTTGCCATGTGCCCGTGATTTTAAA
CGGTTGTTGGACAGCGACAAAGGCCCAAATACAGGAGGGATGGGTTCCAT
CGCCCCTGTCCCTGGTTTAACGCCTGCTGTCGAAAGTAAGATGCGTGATA
TTTTGCAACAGGTAGTAGAGGGGATGAAGGAGGAGGGTCATCCGTATCAT
GGGGTATTGTATGGGGGGTTCATGCTCACGAGGAAGGAGGGAGGGAAGGA
AGAGGGGTGGGAGGAGGAGAAGAGAGAGCCAAAGGTGCTGGAGTTTAACT
GTCGATTCGGTGACCCCGAGACGCAGTCTCTCCTACCCTTGTTACCTTCA
AACACAAGCCTGGCAGCTTTAATGCTTCAGTGCGTGCAAGGAGCGAGCCG
CGAAACAGTTGCAGAAAAGGGAAGTGGGACAGAGGACGCAGCGTGGGAGG
GATTTGCGGCCACCGTGATCGCCGCCTCCGAAAGCTACCCAACCTCATCT
TGGCCCATAAAAGCACACATTATTCATGGCCTACCGCAGGCGGCGTGTGT
CCCAGGAGTGCATAGCGTGGTGCATGCAGGGACAGTCAGGAAAGTCCTCG
CCAACGGCGCCCGCGTGATGACCGTGTCCGGCGGGCGCGTCCTCGGAGTG
ACAGGCAAAGCCTCCACGTTGCGTCTGGCAATCCTTCAAGCCTATCATGG
TCTAAGTGAAATTTTTTTTCAGGGCATGCAGTACAGGACGGACATTGGCG
CAGATGCGGTTAGGTCGGCGCGCGCCCCGGTGCGGGTGGCCGTGCTGGGT
TCCACGAAGGGGACAAGCATCTTGCCTTTACTAAAAGGTAAACCTGGTCA
GTATGATGTGGTGCTTGTCTTATCGAACAAAGAGCTGGAGAATGGATTGT
TGGAGAATGCACGGGCCGCGGGTGTGAAGGATTGTCGGTATGTGGGTGGG
GAAGGGGAAGGAGGCAAAGAGGCTATGGAGAAGATTGAGGTCGCCATGGA
GGAAGCTCAAGCAGAAGTCCTCCTTTTGAATGGATACAATCGAATCTTGT
CACCGCGTTTGGTGCGAATTTTACGAGGTCGATGTTTGAATGTCCACCCT
TCGTTACTGCCTGATTTTGCGGGACATTTTGACCTGGCTGTGCATCAAGC
GGTCTTGGACGCAAAGAGGACTCAAAGTGGTTGCACGGTTCATTTTGTTA
CAGACGACGTGGATCAGGGCCCGGTGTTGGTGCAAAAAACATGCGTGGTT
GAACCGGGTGTGGACACGGCAGCGATGCTCAAGGCCAAGGTACAGGCCTT
GGAGACGGAGGCGTGGGAAGAGGCTTTGCGGGTGTACCAAGAGGACTTGC
CGAGGGTGACGCAGACGATTATGGCCATGGGAGTGAAGCGATAG

Synonyms

Publications