jgi.p|Nanoce1779_2|526535, mRNA_2896 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|526535
Unique Name	mRNA_2896
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1020
Alignment location	scaffold_7:192001..193134 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	526621
Track	FilteredModels2
ProteinId	526535

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:192001..193134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526535	gene_2896	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|526535	mRNA_2896-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2896	CDS_2896	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:192001..193134+
coding sequence from alignment at scaffold_7:192001..193134+

mRNA sequence

>mRNA_2896 ID=mRNA_2896|Name=jgi.p|Nanoce1779_2|526535|organism=Nannochloropsis oceanica|type=mRNA|length=1020bp
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGTAGCGGTGCTGGAGGGGCTAGGGTGGCAG
CTGACGTGCATCGTTCCGTTGCATTTTATCGAGTACTACTTGACCCGCGG
TGTTTTGTTTTGTCATGACACTGTTGCGGGGGCCCAACTTCGAAAACACG
CGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGTTCACCTCACTAGCT
CCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTGTACCTGGCACGGCT
CGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCTCGCTTCTCTGACAG
GAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTCAAATGTTGAAGTCG
TTTAGGTTGGATTATCCACACCACCCTCTAGCAGCAGCAGGAGCGCCAGC
ACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGACTTCGAGTGCCCTAC
GTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAGGTAAGAACTATATT
GTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGAGGAGGGGGAGCGGT
GAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTATTATCTTATGCCGC
GGGGCACGGCATGTGTGTAG

protein sequence of jgi.p|Nanoce1779_2|526535

>mRNA_2896-protein ID=mRNA_2896-protein|Name=jgi.p|Nanoce1779_2|526535|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MKHDEQRHQARYGLPFLPLPPSPAAAAAAAAAVADCTSSLPPPEALAFLR
DGQRRKLMGWLASTGDKLKMRRATVHVAIAYLDRLFQRHVPPKEKWRMLA
ISCLQVAAKYEEAEENVPAVSQLSWASGIGLTIQTVQRWEVAVLEGLGWQ
LTCIVPLHFIEYYLTRGVLFCHDTVAGAQLRKHAHFFASYAIVQEFTSLA
PYPPSFVAALLLYLARLALGVSPTWRPELASLTGVEEDALVGLASQMLKS
FRLDYPHHPLAAAGAPAPAAATGGLSLMTSSALRAGSRAGERKGGGKNYI
VAAAGMGDGAGGGGGAVSVFLPDPPPFDYYLMPRGTACV*

mRNA from alignment at scaffold_7:192001..193134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2896 ID=mRNA_2896|Name=jgi.p|Nanoce1779_2|526535|organism=Nannochloropsis oceanica|type=mRNA|length=1134bp|location=Sequence derived from alignment at scaffold_7:192001..193134+ (Nannochloropsis oceanica)
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGTAGCGGTGCTGGAGGGGCTAGGGTGGCAG
CTGACGTGCATCGTTCCGTTGCATTTTATCGAGTACTACTTGACCCGCGG
TGTTTTGTTTTGTCATGACACTGTTGCGGGGGGTCGGCATCGTCTCGCCC
CTCCTCCCCTTCCCCCCCTCCCGCCCGGGCTTCTGCTGACCAAGGAAGAC
ATTGCCCAAAAGCAACAACAACAGCAGCAGCAGCAGATCGCCCCAGCCCA
ACTTCGAAAACACGCGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGT
TCACCTCACTAGCTCCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTG
TACCTGGCACGGCTCGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCT
CGCTTCTCTGACAGGAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTC
AAATGTTGAAGTCGTTTAGGTTGGATTATCCACACCACCCTCTAGCAGCA
GCAGGAGCGCCAGCACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGAC
TTCGAGTGCCCTACGTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAG
GTAAGAACTATATTGTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGA
GGAGGGGGAGCGGTGAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTA
TTATCTTATGCCGCGGGGCACGGCATGTGTGTAG

Coding sequence (CDS) from alignment at scaffold_7:192001..193134+

>mRNA_2896 ID=mRNA_2896|Name=jgi.p|Nanoce1779_2|526535|organism=Nannochloropsis oceanica|type=CDS|length=2040bp|location=Sequence derived from alignment at scaffold_7:192001..193134+ (Nannochloropsis oceanica)
ATGAAGCATGACGAACAACGCCACCAGGCCAGGTACGGCCTCCCTTTCCT
CCCGCTCCCTCCCTCTCCAGCGGCAGCAGCAGCAGCAGCAGCAGCGGTGG
CAGATTGCACTTCTTCACTTCCCCCACCTGAAGCTTTGGCTTTCCTTCGG
GACGGGCAAAGACGAAAACTGATGGGATGGCTCGCTTCTACTGGCGATAA
ACTCAAAATGCGCCGTGCCACCGTCCACGTCGCGATTGCGTATCTCGACC
GTTTATTCCAACGGCATGTTCCCCCCAAGGAAAAATGGCGAATGCTGGCC
ATCTCGTGTTTACAGGTGGCGGCGAAGTACGAAGAGGCAGAAGAAAACGT
CCCGGCCGTGAGTCAGCTGTCGTGGGCATCCGGCATAGGGCTGACCATTC
AGACGGTGCAGAGGTGGGAGGTAGCGGTGCTGGAGGGGCTAGGGTGGCAG
CTGACGTGCATCGTTCCGTTGCATTTTATCGAGTACTACTTGACCCGCGG
TGTTTTGTTTTGTCATGACACTGTTGCGGGGGCCCAACTTCGAAAACACG
CGCACTTTTTTGCCTCGTATGCGATCGTCCAAGAGTTCACCTCACTAGCT
CCCTACCCTCCCTCCTTTGTTGCTGCTCTCCTTCTGTACCTGGCACGGCT
CGCCCTAGGCGTCTCTCCGACTTGGAGGCCGGAGCTCGCTTCTCTGACAG
GAGTAGAAGAAGATGCCTTGGTTGGGCTAGCGTCTCAAATGTTGAAGTCG
TTTAGGTTGGATTATCCACACCACCCTCTAGCAGCAGCAGGAGCGCCAGC
ACCAGCAGCAGCTACAGGGGGGCTATCCCTTATGACTTCGAGTGCCCTAC
GTGCCGGGAGTAGAGCAGGAGAGAGGAAAGGAGGAGGTAAGAACTATATT
GTTGCAGCGGCTGGGATGGGGGATGGGGCAGGAGGAGGAGGGGGAGCGGT
GAGTGTGTTTTTGCCGGATCCGCCACCGTTTGATTATTATCTTATGCCGC
GGGGCACGGCATGTGTGTAGATGAAGCATGACGAACAACGCCACCAGGCC
AGGTACGGCCTCCCTTTCCTCCCGCTCCCTCCCTCTCCAGCGGCAGCAGC
AGCAGCAGCAGCAGCGGTGGCAGATTGCACTTCTTCACTTCCCCCACCTG
AAGCTTTGGCTTTCCTTCGGGACGGGCAAAGACGAAAACTGATGGGATGG
CTCGCTTCTACTGGCGATAAACTCAAAATGCGCCGTGCCACCGTCCACGT
CGCGATTGCGTATCTCGACCGTTTATTCCAACGGCATGTTCCCCCCAAGG
AAAAATGGCGAATGCTGGCCATCTCGTGTTTACAGGTGGCGGCGAAGTAC
GAAGAGGCAGAAGAAAACGTCCCGGCCGTGAGTCAGCTGTCGTGGGCATC
CGGCATAGGGCTGACCATTCAGACGGTGCAGAGGTGGGAGGTAGCGGTGC
TGGAGGGGCTAGGGTGGCAGCTGACGTGCATCGTTCCGTTGCATTTTATC
GAGTACTACTTGACCCGCGGTGTTTTGTTTTGTCATGACACTGTTGCGGG
GGCCCAACTTCGAAAACACGCGCACTTTTTTGCCTCGTATGCGATCGTCC
AAGAGTTCACCTCACTAGCTCCCTACCCTCCCTCCTTTGTTGCTGCTCTC
CTTCTGTACCTGGCACGGCTCGCCCTAGGCGTCTCTCCGACTTGGAGGCC
GGAGCTCGCTTCTCTGACAGGAGTAGAAGAAGATGCCTTGGTTGGGCTAG
CGTCTCAAATGTTGAAGTCGTTTAGGTTGGATTATCCACACCACCCTCTA
GCAGCAGCAGGAGCGCCAGCACCAGCAGCAGCTACAGGGGGGCTATCCCT
TATGACTTCGAGTGCCCTACGTGCCGGGAGTAGAGCAGGAGAGAGGAAAG
GAGGAGGTAAGAACTATATTGTTGCAGCGGCTGGGATGGGGGATGGGGCA
GGAGGAGGAGGGGGAGCGGTGAGTGTGTTTTTGCCGGATCCGCCACCGTT
TGATTATTATCTTATGCCGCGGGGCACGGCATGTGTGTAG

Synonyms

Publications