jgi.p|Nanoce1779_2|629184, mRNA_2894 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629184
Unique Name	mRNA_2894
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1279
Alignment location	scaffold_7:181997..183775 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629270
Track	FilteredModels2
ProteinId	629184

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:181997..183775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629184	gene_2894	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629184	mRNA_2894-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2894	CDS_2894	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:181997..183775+
coding sequence from alignment at scaffold_7:181997..183775+

mRNA sequence

>mRNA_2894 ID=mRNA_2894|Name=jgi.p|Nanoce1779_2|629184|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp
AGTCATGCGTGGTCTTACCCCCTTAGAGACAGCTGCTACGTCTTTCGCCC
CTGACCCTCATTGCCTAACCCCAATCCATCCCGCCTTCCTCCAACTGTGC
CTCGCCTCAAGGCGTTACCAGCAAGCCGCCGATTTCGTTGACCAAAGGCC
AATCTATCGAGTGGATCCCGTGAAGACAGGCATGGTGGTTTTGGATTTGC
TCCGGTACTTCCATTATGCGGGGATGGTGTTTGTCGGCCTGCGGCGGTTT
GAAGAGGCGTGTGATTGTTTTCGAACTGTCTTGGCGACGCCTGCGCATGC
CCTCTCAGCTGTCGCGTTGGAGAGTTATAAAAAACTGCTGCTTGTCACGG
CGTTGCTTCCTTCCTCGTCTTCCCTTCCTGTACCCTTTGCGGAAAGTGGC
ACATCCGCTGCTGCCACTGCTGCTGCTGCCACTGCTGCCACTGCTGCCAC
TGCTGCCACTGCTGCCACTGCTGCTGCTGCTTCTCAGGGCAGGGCGCTGC
TATCCAACAAGACACCTTCGGTGGTTTCTCGTGCTGTCGGACAGATGTCC
GTGATGTACTCGGATGTGCTGGCGGCGGCCCGGGCGGGAAATGCAGGGGG
TGTGAAGGCATTGATCGAGAAGCACACCGAGGCCTTGATGGCGGACAACA
ACTTGGGCTTGGCTCGGCAGGTCCTTGACGAGGTCGTGGTGAAGACGCTG
CGGCGACTCACCCGGACGTATGTCACGCTCTCTTTGGAAGACATCGCTCA
GCATACTGGGTGTGCATCAGCAGCAGCATCAGAAAAGTTGGTCGTGGACA
ATGTCGCGCAAGGGAAGATTGTGGCAGCGGTGGATGAGGTGACGGGCACG
GTCTTCTTCAGTGAGGACGAGCCGAAGGAAGCGCTTGGGTCCGCTGCTAC
CATTGCACGCCTCGACAAGGAGCTGGAATTGGTGATGGCTTTGGCAAACA
AAGTACAGGCCCTTGATCTTCAGATCTCTACAACTTCCCAGTATGTGCAT
AAAACCATGGGAGGGGAAAGAGGAGGGGGAGGGAGACGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGGGGTGGGGGAGGAGGAGGAGGAGGAAGGA
TGAGTGGATTGTCGGGGGCGAGTCCGGGGATAAGCGCGGCGACCGTTGGA
GTGATTTTGGGAGGAGGAGGAGTAGGAGGAGGAGGAGGAGGGCGGGGAAT
GCACGGGATATATGGTGACAATGTGATGGGGGGGGATGAGGAGGAGGGTG
AGGAGGACGACGAGGACGACTTTGCGTGA

protein sequence of jgi.p|Nanoce1779_2|629184

>mRNA_2894-protein ID=mRNA_2894-protein|Name=jgi.p|Nanoce1779_2|629184|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MRGLTPLETAATSFAPDPHCLTPIHPAFLQLCLASRRYQQAADFVDQRPI
YRVDPVKTGMVVLDLLRYFHYAGMVFVGLRRFEEACDCFRTVLATPAHAL
SAVALESYKKLLLVTALLPSSSSLPVPFAESGTSAAATAAAATAATAATA
ATAATAAAASQGRALLSNKTPSVVSRAVGQMSVMYSDVLAAARAGNAGGV
KALIEKHTEALMADNNLGLARQVLDEVVVKTLRRLTRTYVTLSLEDIAQH
TGCASAAASEKLVVDNVAQGKIVAAVDEVTGTVFFSEDEPKEALGSAATI
ARLDKELELVMALANKVQALDLQISTTSQYVHKTMGGERGGGGRRGGGGG
GGGGGGGGGGGGGGRMSGLSGASPGISAATVGVILGGGGVGGGGGGRGMH
GIYGDNVMGGDEEEGEEDDEDDFA*

mRNA from alignment at scaffold_7:181997..183775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2894 ID=mRNA_2894|Name=jgi.p|Nanoce1779_2|629184|organism=Nannochloropsis oceanica|type=mRNA|length=1779bp|location=Sequence derived from alignment at scaffold_7:181997..183775+ (Nannochloropsis oceanica)
AGTCATGCGTGGTCTTACCCCCTTAGAGACAGCTGCTACGTCTTTCGCCC
CTGACCCTCATTGCCTAACCCCAATCCATCCCGCCTTCCTCCAACTGTGC
CTCGCCTCAAGGCGTTACCAGCAAGCCGCCGATTTCGTTGACCAAAGGCC
AATCTATCGAGTGGATCCCGTGAAGACAGGCATGGTGGTTTTGGATTTGC
TCCGGTACTTCCATTATGCGGGGATGGTGTTTGTCGGCCTGCGGCGGTTT
GAAGAGGCGTGTGATTGTTTTCGAACTGTCTTGGCGACGCCTGCGCATGC
CCTCTCAGCTGTCGCGTTGGAGAGTTATAAAAAACTGCTGCTTGTCACGG
CGTTGCTTCCTTCCTCGTCTTCCCTTCCTGTACCCTTTGCGGAAAGTGGC
ACATCCGCTGCTGCCACTGCTGCTGCTGCCACTGCTGCCACTGCTGCCAC
TGCTGCCACTGCTGCCACTGCTGCTGCTGCTTCTCAGGGCAGGGCGCTGC
TATCCAACAAGACACCTTCGGTGGTTTCTCGTGCTGTCGGACAGATGTCC
GTGATGTACTCGGATGTGCTGGCGGCGGCCCGGGCGGGAAATGCAGGGGG
TGTGAAGGCATTGATCGAGAAGCACACCGAGGCCTTGATGGCGGACAACA
ACTTGGGCTTGGCTCGGCAGGTACGAATGCACTTGTCTTCCTTCCCTGCC
CCCCTCCCCGCCCCTCCCTCTTTTCCCCTTCCTTCATTTATTCCTTGTTT
CCGACGTGCATGCCCTCTGCTCTTTACTTTCTTCTGTCCTCCTTGCTCCC
TCCCTCCTCCTTCAGGTCCTTGACGAGGTCGTGGTGAAGACGCTGCGGCG
ACTCACCCGGACGTATGTCACGCTCTCTTTGGAAGACATCGCTCAGCATA
CTGGGTGTGCATCAGCAGCAGCATCAGAAAAGTTGGTCGTGGACAATGTC
GCGCAAGGGAAGATTGTGGCAGCGGTGGATGAGGTGACGGGCACGGTCTT
CTTCAGTGAGGACGAGCCGAAGGAAGCGCTTGGGTATGTGGGACGAGGAG
GGAGGGAGGGAGAGAGAGAGGGAGGGGGGGAAGGGGGAAGGGGATGTGGA
AGAAGAGGCCACGTGTGGAGTTGCGGAGACAATAGGCTCAGAAGGCAAGG
AGGGAGGGCGGGATGGAAGCGTTATCGTGCTCCCTTCCATCCCGCACTCC
CTTTCTCCCTCCCTCCCTTCTCGTAGATCCGATACATGCACGGCACACCT
GGATGCGACCAGGAGCGAGGGGAAATGGTTCCTGACAAACGACGTCAACG
GCTTGAATGTCGCACTAATTCACCCTCTTTCCCTCCTTTCCTTCCCCCCC
TCCGTCTTTTCCTCCTCCCCCCTCCTCCCCCCGTGCAGGTCCGCTGCTAC
CATTGCACGCCTCGACAAGGAGCTGGAATTGGTGATGGCTTTGGCAAACA
AAGTACAGGCCCTTGATCTTCAGATCTCTACAACTTCCCAGTATGTGCAT
AAAACCATGGGAGGGGAAAGAGGAGGGGGAGGGAGACGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGGGGGGGTGGGGGAGGAGGAGGAGGAGGAAGGA
TGAGTGGATTGTCGGGGGCGAGTCCGGGGATAAGCGCGGCGACCGTTGGA
GTGATTTTGGGAGGAGGAGGAGTAGGAGGAGGAGGAGGAGGGCGGGGAAT
GCACGGGATATATGGTGACAATGTGATGGGGGGGGATGAGGAGGAGGGTG
AGGAGGACGACGAGGACGACTTTGCGTGA

Coding sequence (CDS) from alignment at scaffold_7:181997..183775+

>mRNA_2894 ID=mRNA_2894|Name=jgi.p|Nanoce1779_2|629184|organism=Nannochloropsis oceanica|type=CDS|length=3825bp|location=Sequence derived from alignment at scaffold_7:181997..183775+ (Nannochloropsis oceanica)
ATGCGTGGTCTTACCCCCTTAGAGACAGCTGCTACGTCTTTCGCCCCTGA
CCCTCATTGCCTAACCCCAATCCATCCCGCCTTCCTCCAACTGTGCCTCG
CCTCAAGGCGTTACCAGCAAGCCGCCGATTTCGTTGACCAAAGGCCAATC
TATCGAGTGGATCCCGTGAAGACAGGCATGGTGGTTTTGGATTTGCTCCG
GTACTTCCATTATGCGGGGATGGTGTTTGTCGGCCTGCGGCGGTTTGAAG
AGGCGTGTGATTGTTTTCGAACTGTCTTGGCGACGCCTGCGCATGCCCTC
TCAGCTGTCGCGTTGGAGAGTTATAAAAAACTGCTGCTTGTCACGGCGTT
GCTTCCTTCCTCGTCTTCCCTTCCTGTACCCTTTGCGGAAAGTGGCACAT
CCGCTGCTGCCACTGCTGCTGCTGCCACTGCTGCCACTGCTGCCACTGCT
GCCACTGCTGCCACTGCTGCTGCTGCTTCTCAGGGCAGGGCGCTGCTATC
CAACAAGACACCTTCGGTGGTTTCTCGTGCTGTCGGACAGATGTCCGTGA
TGTACTCGGATGTGCTGGCGGCGGCCCGGGCGGGAAATGCAGGGGGTGTG
AAGGCATTGATCGAGAAGCACACCGAGGCCTTGATGGCGGACAACAACTT
GGGCTTGGCTCGGCAGGTCCTTGACGAGGTCGTGGTGAAGACGCTGCGGC
GACTCACCCGGACGTATGTCACGCTCTCTTTGGAAGACATCGCTCAGCAT
ACTGGGTGTGCATCAGCAGCAGCATCAGAAAAGTTGGTCGTGGACAATGT
CGCGCAAGGGAAGATTGTGGCAGCGGTGGATGAGGTGACGGGCACGGTCT
TCTTCAGTGAGGACGAGCCGAAGGAAGCGCTTGGGTCCGCTGCTACCATT
GCACGCCTCGACAAGGAGCTGGAATTGGTGATGGCTTTGGCAAACAAAGT
ACAGGCCCTTGATCTTCAGATCTCTACAACTTCCCAGTATGTGCATAAAA
CCATGGGAGGGGAAAGAGGAGGGGGAGGGAGACGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGGGGGGTGGGGGAGGAGGAGGAGGAGGAAGGATGAG
TGGATTGTCGGGGGCGAGTCCGGGGATAAGCGCGGCGACCGTTGGAGTGA
TTTTGGGAGGAGGAGGAGTAGGAGGAGGAGGAGGAGGGCGGGGAATGCAC
GGGATATATGGTGACAATGTGATGGGGGGGGATGAGGAGGAGGGTGAGGA
GGACGACGAGGACGACTTTGCGTGAATGCGTGGTCTTACCCCCTTAGAGA
CAGCTGCTACGTCTTTCGCCCCTGACCCTCATTGCCTAACCCCAATCCAT
CCCGCCTTCCTCCAACTGTGCCTCGCCTCAAGGCGTTACCAGCAAGCCGC
CGATTTCGTTGACCAAAGGCCAATCTATCGAGTGGATCCCGTGAAGACAG
GCATGGTGGTTTTGGATTTGCTCCGGTACTTCCATTATGCGGGGATGGTG
TTTGTCGGCCTGCGGCGGTTTGAAGAGGCGTGTGATTGTTTTCGAACTGT
CTTGGCGACGCCTGCGCATGCCCTCTCAGCTGTCGCGTTGGAGAGTTATA
AAAAACTGCTGCTTGTCACGGCGTTGCTTCCTTCCTCGTCTTCCCTTCCT
GTACCCTTTGCGGAAAGTGGCACATCCGCTGCTGCCACTGCTGCTGCTGC
CACTGCTGCCACTGCTGCCACTGCTGCCACTGCTGCCACTGCTGCTGCTG
CTTCTCAGGGCAGGGCGCTGCTATCCAACAAGACACCTTCGGTGGTTTCT
CGTGCTGTCGGACAGATGTCCGTGATGTACTCGGATGTGCTGGCGGCGGC
CCGGGCGGGAAATGCAGGGGGTGTGAAGGCATTGATCGAGAAGCACACCG
AGGCCTTGATGGCGGACAACAACTTGGGCTTGGCTCGGCAGGTCCTTGAC
GAGGTCGTGGTGAAGACGCTGCGGCGACTCACCCGGACGTATGTCACGCT
CTCTTTGGAAGACATCGCTCAGCATACTGGGTGTGCATCAGCAGCAGCAT
CAGAAAAGTTGGTCGTGGACAATGTCGCGCAAGGGAAGATTGTGGCAGCG
GTGGATGAGGTGACGGGCACGGTCTTCTTCAGTGAGGACGAGCCGAAGGA
AGCGCTTGGGTCCGCTGCTACCATTGCACGCCTCGACAAGGAGCTGGAAT
TGGTGATGGCTTTGGCAAACAAAGTACAGGCCCTTGATCTTCAGATCTCT
ACAACTTCCCAGTATGTGCATAAAACCATGGGAGGGGAAAGAGGAGGGGG
AGGGAGACGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGGGTGGGG
GAGGAGGAGGAGGAGGAAGGATGAGTGGATTGTCGGGGGCGAGTCCGGGG
ATAAGCGCGGCGACCGTTGGAGTGATTTTGGGAGGAGGAGGAGTAGGAGG
AGGAGGAGGAGGGCGGGGAATGCACGGGATATATGGTGACAATGTGATGG
GGGGGGATGAGGAGGAGGGTGAGGAGGACGACGAGGACGACTTTGCGTGA
ATGCGTGGTCTTACCCCCTTAGAGACAGCTGCTACGTCTTTCGCCCCTGA
CCCTCATTGCCTAACCCCAATCCATCCCGCCTTCCTCCAACTGTGCCTCG
CCTCAAGGCGTTACCAGCAAGCCGCCGATTTCGTTGACCAAAGGCCAATC
TATCGAGTGGATCCCGTGAAGACAGGCATGGTGGTTTTGGATTTGCTCCG
GTACTTCCATTATGCGGGGATGGTGTTTGTCGGCCTGCGGCGGTTTGAAG
AGGCGTGTGATTGTTTTCGAACTGTCTTGGCGACGCCTGCGCATGCCCTC
TCAGCTGTCGCGTTGGAGAGTTATAAAAAACTGCTGCTTGTCACGGCGTT
GCTTCCTTCCTCGTCTTCCCTTCCTGTACCCTTTGCGGAAAGTGGCACAT
CCGCTGCTGCCACTGCTGCTGCTGCCACTGCTGCCACTGCTGCCACTGCT
GCCACTGCTGCCACTGCTGCTGCTGCTTCTCAGGGCAGGGCGCTGCTATC
CAACAAGACACCTTCGGTGGTTTCTCGTGCTGTCGGACAGATGTCCGTGA
TGTACTCGGATGTGCTGGCGGCGGCCCGGGCGGGAAATGCAGGGGGTGTG
AAGGCATTGATCGAGAAGCACACCGAGGCCTTGATGGCGGACAACAACTT
GGGCTTGGCTCGGCAGGTCCTTGACGAGGTCGTGGTGAAGACGCTGCGGC
GACTCACCCGGACGTATGTCACGCTCTCTTTGGAAGACATCGCTCAGCAT
ACTGGGTGTGCATCAGCAGCAGCATCAGAAAAGTTGGTCGTGGACAATGT
CGCGCAAGGGAAGATTGTGGCAGCGGTGGATGAGGTGACGGGCACGGTCT
TCTTCAGTGAGGACGAGCCGAAGGAAGCGCTTGGGTCCGCTGCTACCATT
GCACGCCTCGACAAGGAGCTGGAATTGGTGATGGCTTTGGCAAACAAAGT
ACAGGCCCTTGATCTTCAGATCTCTACAACTTCCCAGTATGTGCATAAAA
CCATGGGAGGGGAAAGAGGAGGGGGAGGGAGACGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGGGGGGGTGGGGGAGGAGGAGGAGGAGGAAGGATGAG
TGGATTGTCGGGGGCGAGTCCGGGGATAAGCGCGGCGACCGTTGGAGTGA
TTTTGGGAGGAGGAGGAGTAGGAGGAGGAGGAGGAGGGCGGGGAATGCAC
GGGATATATGGTGACAATGTGATGGGGGGGGATGAGGAGGAGGGTGAGGA
GGACGACGAGGACGACTTTGCGTGA

Synonyms

Publications