jgi.p|Nanoce1779_2|583717, mRNA_2892 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583717
Unique NamemRNA_2892
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1034
Alignment locationscaffold_7:177798..178831 +

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Properties
Property NameValue
TranscriptId583803
TrackFilteredModels2
ProteinId583717
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:177798..178831 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583717gene_2892Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583717mRNA_2892-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2892CDS_2892Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2892 ID=mRNA_2892|Name=jgi.p|Nanoce1779_2|583717|organism=Nannochloropsis oceanica|type=mRNA|length=1034bp
ACAGGCCGTTATTTTGTGTGAAGGTTATTACATTTTGTACTAATACTTTC
CGTCACGCCACGCGTCACCCTTTGGAAAACCCGCCTCCTCGACCTCGCCT
CAACCATGTCCATCCGCAACCCCTTTATGCAATGGATCAATCAGTACGTG
CGCCCTTACCTGCGAGAACGCCTGATGCCCTTGTTGGAAGCTGAAGGAGC
CGCTGCCCCCAAGAGGAAGAGCGGCAGCAGCACGCGGCTTGTCAGTCCTG
TTGGTGCTAGCGCTGCCGGCAGCCAACACCACATCTCTAAGCTCAGCGGT
GACCAGACGAATAGCAGGGCGGGAAGTGTTATCTCTATGGACTCCCTTCT
TCTCCAGCAGCAGCAATCTGCTGTCTTGGCCACGGCTCTTTCTGCCATCC
ATCGCCGTAAGGCGTCGGAGCATCAAGCAGAGATCCCTTCTGTCCCAACA
CAGAAGCAACAACACCAACACCAAGCTACTCGTGCTACCCTTAAGATGGA
TCAGTTTCCCTCCTCCGCCCCGGAACAGCAGGAGCAACAACAGCAGGTGT
CCGCCCGCACCAAGATCCAAGTCAACGCCCCCACGACTAACGCTGGCGCC
GATGTTGTCGCCGCCACTGCTACACCTGCTTCTACAGCCCCCTCTTCTCC
CTCTTCTCGTTTCAAGCGGTGTTACTACGTGCCAGTCATGAACCCTTTGC
CTGACTTGAAGGAGAAGCAGCTCGCTGTCTTAGAGATGCCTCTGTACGGC
ATCCGCGATATGCCCACCTTCCGAGAGCTACTTAATTCCCTCCCACCCTC
TGTGATTTCGACAGCGAAGCTGAGGGGTCTGTCCCTGTTGCAGGTACCGG
AGATGGTGGCGTCGATGGAGGAGCAGAGCTCAACCGCTTTCTTGTCCGCG
GGGGATGCCTTTCCCTTGCAGGAAGAGCTGGGGAAGGGAAAAAGGAGGAA
AGAGGTGGAGGGAGAGGAGGAAGAGGAGGAAGAGGGCGTGGTAGAGAGGG
AGGAGCGTTTGGCCTAGACGTTGGTTTGATGGGG
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protein sequence of jgi.p|Nanoce1779_2|583717

>mRNA_2892-protein ID=mRNA_2892-protein|Name=jgi.p|Nanoce1779_2|583717|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MSIRNPFMQWINQYVRPYLRERLMPLLEAEGAAAPKRKSGSSTRLVSPVG
ASAAGSQHHISKLSGDQTNSRAGSVISMDSLLLQQQQSAVLATALSAIHR
RKASEHQAEIPSVPTQKQQHQHQATRATLKMDQFPSSAPEQQEQQQQVSA
RTKIQVNAPTTNAGADVVAATATPASTAPSSPSSRFKRCYYVPVMNPLPD
LKEKQLAVLEMPLYGIRDMPTFRELLNSLPPSVISTAKLRGLSLLQVPEM
VASMEEQSSTAFLSAGDAFPLQEELGKGKRRKEVEGEEEEEEEGVVEREE
RLA*
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mRNA from alignment at scaffold_7:177798..178831+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2892 ID=mRNA_2892|Name=jgi.p|Nanoce1779_2|583717|organism=Nannochloropsis oceanica|type=mRNA|length=1034bp|location=Sequence derived from alignment at scaffold_7:177798..178831+ (Nannochloropsis oceanica)
ACAGGCCGTTATTTTGTGTGAAGGTTATTACATTTTGTACTAATACTTTC
CGTCACGCCACGCGTCACCCTTTGGAAAACCCGCCTCCTCGACCTCGCCT
CAACCATGTCCATCCGCAACCCCTTTATGCAATGGATCAATCAGTACGTG
CGCCCTTACCTGCGAGAACGCCTGATGCCCTTGTTGGAAGCTGAAGGAGC
CGCTGCCCCCAAGAGGAAGAGCGGCAGCAGCACGCGGCTTGTCAGTCCTG
TTGGTGCTAGCGCTGCCGGCAGCCAACACCACATCTCTAAGCTCAGCGGT
GACCAGACGAATAGCAGGGCGGGAAGTGTTATCTCTATGGACTCCCTTCT
TCTCCAGCAGCAGCAATCTGCTGTCTTGGCCACGGCTCTTTCTGCCATCC
ATCGCCGTAAGGCGTCGGAGCATCAAGCAGAGATCCCTTCTGTCCCAACA
CAGAAGCAACAACACCAACACCAAGCTACTCGTGCTACCCTTAAGATGGA
TCAGTTTCCCTCCTCCGCCCCGGAACAGCAGGAGCAACAACAGCAGGTGT
CCGCCCGCACCAAGATCCAAGTCAACGCCCCCACGACTAACGCTGGCGCC
GATGTTGTCGCCGCCACTGCTACACCTGCTTCTACAGCCCCCTCTTCTCC
CTCTTCTCGTTTCAAGCGGTGTTACTACGTGCCAGTCATGAACCCTTTGC
CTGACTTGAAGGAGAAGCAGCTCGCTGTCTTAGAGATGCCTCTGTACGGC
ATCCGCGATATGCCCACCTTCCGAGAGCTACTTAATTCCCTCCCACCCTC
TGTGATTTCGACAGCGAAGCTGAGGGGTCTGTCCCTGTTGCAGGTACCGG
AGATGGTGGCGTCGATGGAGGAGCAGAGCTCAACCGCTTTCTTGTCCGCG
GGGGATGCCTTTCCCTTGCAGGAAGAGCTGGGGAAGGGAAAAAGGAGGAA
AGAGGTGGAGGGAGAGGAGGAAGAGGAGGAAGAGGGCGTGGTAGAGAGGG
AGGAGCGTTTGGCCTAGACGTTGGTTTGATGGGG
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Coding sequence (CDS) from alignment at scaffold_7:177798..178831+

>mRNA_2892 ID=mRNA_2892|Name=jgi.p|Nanoce1779_2|583717|organism=Nannochloropsis oceanica|type=CDS|length=912bp|location=Sequence derived from alignment at scaffold_7:177798..178831+ (Nannochloropsis oceanica)
ATGTCCATCCGCAACCCCTTTATGCAATGGATCAATCAGTACGTGCGCCC
TTACCTGCGAGAACGCCTGATGCCCTTGTTGGAAGCTGAAGGAGCCGCTG
CCCCCAAGAGGAAGAGCGGCAGCAGCACGCGGCTTGTCAGTCCTGTTGGT
GCTAGCGCTGCCGGCAGCCAACACCACATCTCTAAGCTCAGCGGTGACCA
GACGAATAGCAGGGCGGGAAGTGTTATCTCTATGGACTCCCTTCTTCTCC
AGCAGCAGCAATCTGCTGTCTTGGCCACGGCTCTTTCTGCCATCCATCGC
CGTAAGGCGTCGGAGCATCAAGCAGAGATCCCTTCTGTCCCAACACAGAA
GCAACAACACCAACACCAAGCTACTCGTGCTACCCTTAAGATGGATCAGT
TTCCCTCCTCCGCCCCGGAACAGCAGGAGCAACAACAGCAGGTGTCCGCC
CGCACCAAGATCCAAGTCAACGCCCCCACGACTAACGCTGGCGCCGATGT
TGTCGCCGCCACTGCTACACCTGCTTCTACAGCCCCCTCTTCTCCCTCTT
CTCGTTTCAAGCGGTGTTACTACGTGCCAGTCATGAACCCTTTGCCTGAC
TTGAAGGAGAAGCAGCTCGCTGTCTTAGAGATGCCTCTGTACGGCATCCG
CGATATGCCCACCTTCCGAGAGCTACTTAATTCCCTCCCACCCTCTGTGA
TTTCGACAGCGAAGCTGAGGGGTCTGTCCCTGTTGCAGGTACCGGAGATG
GTGGCGTCGATGGAGGAGCAGAGCTCAACCGCTTTCTTGTCCGCGGGGGA
TGCCTTTCCCTTGCAGGAAGAGCTGGGGAAGGGAAAAAGGAGGAAAGAGG
TGGAGGGAGAGGAGGAAGAGGAGGAAGAGGGCGTGGTAGAGAGGGAGGAG
CGTTTGGCCTAG
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Synonyms
Publications