jgi.p|Nanoce1779_2|583715, mRNA_2891 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583715
Unique NamemRNA_2891
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1106
Alignment locationscaffold_7:176181..177286 -

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Properties
Property NameValue
TranscriptId583801
TrackFilteredModels2
ProteinId583715
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:176181..177286 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583715gene_2891Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583715mRNA_2891-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2891CDS_2891Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2891 ID=mRNA_2891|Name=jgi.p|Nanoce1779_2|583715|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp
ATCACAATGGATTTGGTTGGGTTCTCAACTGAGAAACAGCATCGCTCACT
TGCCGTTCCAACTTGCCGTTCCCCTTCATTCCTACTCTCTCGACCCTTCT
TGTAAAAGTTCGAGCGTGCTTCAGTCAACCAACCCCCGCACAGGAGCTGT
CTTGTCGTTATTTATTCCACTTTTTCCTCCTTGCTTCTGACTTCATGCCA
CGCTCGCGCTTGCACCGCACGCATCCCCGTGAGAAACGACGGCAACATCA
ACAACCGCAGGATACACTGCCGTCGTGCTCGTGTTTGTTCCGTGCACAGG
CAAATCAGGAAGAACGCACGTCAGACACGCATTGATCCCATTTAAGCACC
ATTCTTACAATGCTCTTGCTCGCTTTCTCTTCCTGTTCCACTCCCTGGCT
CACGTAAATCGCCTTTCCTCCACTATCCACCACACGCACAGACCTCCTCC
CTCCCTCCTCTCTTCAAGCCAAGCATGATGGGCATTCTCCTCCTCCTCGC
ATTGGTCGCCACAAGCGCAACCACCACCCTGGGCTTCATAATGCCTGCTG
CACATCCCATAGCCTCACCCGTCCGCACGCTCGTCACCGCCGTCGCTGCC
GCCCCCAGTGCGGTGGTAGTGGAGACGTTCATATTGCCCATGGGTGACGA
CTCACGCTTGAAAATCCGCTGCGAGTCAGAAACTTTCAAAGACCTGGCTT
TACGCGTGAATGCACTATTGGCTTCTTTCCGCAATATTAAGGCCGCCAAT
GCAGCAGAGGACAAGAAGGGACCAGCACCTCGCGAGCCGTCTTTGGAATT
CTTGACGAAGAACTTTGAGACGCATTTGGAGATGGAATGCAACCCCAATA
TTTACCCCGATGCGTTCCATGCGACGGTATTTGTGAAGGTCAAAAATGAA
GTGTTGGAGGTTACGTCGCAGTGTCAGTTGAGTGCGTTAGTGGATGCTTT
AAAGCTCTACAAGCAGACTTACAAGATCAAGATGGAGGCGAGCAATGCAG
AGCCGAGCAACTAGGCCAGCAAGTCGAGGAATGGGACATATGTGGGTCAG
TGATATGCAGAATTGGAAATTATGGGACTTTGGAAGAAAAATACGTGAAC
TGATTA
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protein sequence of jgi.p|Nanoce1779_2|583715

>mRNA_2891-protein ID=mRNA_2891-protein|Name=jgi.p|Nanoce1779_2|583715|organism=Nannochloropsis oceanica|type=polypeptide|length=180bp
MMGILLLLALVATSATTTLGFIMPAAHPIASPVRTLVTAVAAAPSAVVVE
TFILPMGDDSRLKIRCESETFKDLALRVNALLASFRNIKAANAAEDKKGP
APREPSLEFLTKNFETHLEMECNPNIYPDAFHATVFVKVKNEVLEVTSQC
QLSALVDALKLYKQTYKIKMEASNAEPSN*
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mRNA from alignment at scaffold_7:176181..177286-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2891 ID=mRNA_2891|Name=jgi.p|Nanoce1779_2|583715|organism=Nannochloropsis oceanica|type=mRNA|length=1106bp|location=Sequence derived from alignment at scaffold_7:176181..177286- (Nannochloropsis oceanica)
ATCACAATGGATTTGGTTGGGTTCTCAACTGAGAAACAGCATCGCTCACT
TGCCGTTCCAACTTGCCGTTCCCCTTCATTCCTACTCTCTCGACCCTTCT
TGTAAAAGTTCGAGCGTGCTTCAGTCAACCAACCCCCGCACAGGAGCTGT
CTTGTCGTTATTTATTCCACTTTTTCCTCCTTGCTTCTGACTTCATGCCA
CGCTCGCGCTTGCACCGCACGCATCCCCGTGAGAAACGACGGCAACATCA
ACAACCGCAGGATACACTGCCGTCGTGCTCGTGTTTGTTCCGTGCACAGG
CAAATCAGGAAGAACGCACGTCAGACACGCATTGATCCCATTTAAGCACC
ATTCTTACAATGCTCTTGCTCGCTTTCTCTTCCTGTTCCACTCCCTGGCT
CACGTAAATCGCCTTTCCTCCACTATCCACCACACGCACAGACCTCCTCC
CTCCCTCCTCTCTTCAAGCCAAGCATGATGGGCATTCTCCTCCTCCTCGC
ATTGGTCGCCACAAGCGCAACCACCACCCTGGGCTTCATAATGCCTGCTG
CACATCCCATAGCCTCACCCGTCCGCACGCTCGTCACCGCCGTCGCTGCC
GCCCCCAGTGCGGTGGTAGTGGAGACGTTCATATTGCCCATGGGTGACGA
CTCACGCTTGAAAATCCGCTGCGAGTCAGAAACTTTCAAAGACCTGGCTT
TACGCGTGAATGCACTATTGGCTTCTTTCCGCAATATTAAGGCCGCCAAT
GCAGCAGAGGACAAGAAGGGACCAGCACCTCGCGAGCCGTCTTTGGAATT
CTTGACGAAGAACTTTGAGACGCATTTGGAGATGGAATGCAACCCCAATA
TTTACCCCGATGCGTTCCATGCGACGGTATTTGTGAAGGTCAAAAATGAA
GTGTTGGAGGTTACGTCGCAGTGTCAGTTGAGTGCGTTAGTGGATGCTTT
AAAGCTCTACAAGCAGACTTACAAGATCAAGATGGAGGCGAGCAATGCAG
AGCCGAGCAACTAGGCCAGCAAGTCGAGGAATGGGACATATGTGGGTCAG
TGATATGCAGAATTGGAAATTATGGGACTTTGGAAGAAAAATACGTGAAC
TGATTA
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Coding sequence (CDS) from alignment at scaffold_7:176181..177286-

>mRNA_2891 ID=mRNA_2891|Name=jgi.p|Nanoce1779_2|583715|organism=Nannochloropsis oceanica|type=CDS|length=540bp|location=Sequence derived from alignment at scaffold_7:176181..177286- (Nannochloropsis oceanica)
ATGATGGGCATTCTCCTCCTCCTCGCATTGGTCGCCACAAGCGCAACCAC
CACCCTGGGCTTCATAATGCCTGCTGCACATCCCATAGCCTCACCCGTCC
GCACGCTCGTCACCGCCGTCGCTGCCGCCCCCAGTGCGGTGGTAGTGGAG
ACGTTCATATTGCCCATGGGTGACGACTCACGCTTGAAAATCCGCTGCGA
GTCAGAAACTTTCAAAGACCTGGCTTTACGCGTGAATGCACTATTGGCTT
CTTTCCGCAATATTAAGGCCGCCAATGCAGCAGAGGACAAGAAGGGACCA
GCACCTCGCGAGCCGTCTTTGGAATTCTTGACGAAGAACTTTGAGACGCA
TTTGGAGATGGAATGCAACCCCAATATTTACCCCGATGCGTTCCATGCGA
CGGTATTTGTGAAGGTCAAAAATGAAGTGTTGGAGGTTACGTCGCAGTGT
CAGTTGAGTGCGTTAGTGGATGCTTTAAAGCTCTACAAGCAGACTTACAA
GATCAAGATGGAGGCGAGCAATGCAGAGCCGAGCAACTAG
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Synonyms
Publications