jgi.p|Nanoce1779_2|583710, mRNA_2890 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583710
Unique NamemRNA_2890
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length958
Alignment locationscaffold_7:174719..175676 -

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Properties
Property NameValue
TranscriptId583796
TrackFilteredModels2
ProteinId583710
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:174719..175676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583710gene_2890Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583710mRNA_2890-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2890CDS_2890Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2890 ID=mRNA_2890|Name=jgi.p|Nanoce1779_2|583710|organism=Nannochloropsis oceanica|type=mRNA|length=958bp
ACAGCTTTGTCACCTCCACAAACCGTGCGCCTGCAGGTTACAACCCCCCA
AGAGCAACCGTCCGGATGATGGCAACCGCTACACAGCACGTCGTTGTCGG
CAAAGGTCGAGTGGGGGAAGCTTTGGCAAAAATGCTCGGGCCTAAGGCCA
TCATGGTAGGGCGGACAGACCCTGTCCCTTCGGAAGGTACGGGCCCTATC
TACATCGCCACACGGAACGACGACCTTGCCGCCGTCATCGAAAAGACACC
CCCCAATCGTCGCAAGGACCTTGTATTCATGCAAAACGGGATGCTAGGCA
CTTTCCTCGAAAGGTCTGCCCTTCAGGATAACACACAAGTTCTCGTGTAC
TTTGCTGTGGCCAAAAAGGGGGAGGCGCCGACGGACGGCGTCACTGACCT
TAACCCTGAAGGGCTGACCGCGGCTCATGGAGAGTGGGCAAATGACCTAG
CAGCGACGCTCAGAGCCGCAGGGTTAAGCTGTCACGTTTTAGAGAAAGAA
CCGTTTCGGGCGGCCATGTTTGAGAAGCTCATTTGGATATCATCGTTTAT
GTTGGTTGGTGCTGCGCACGGAGGGATTACGGTGGGGGAGGTGGAGCAGA
GTCATCGACCACAAGTTGTGGCGCTCATCAAGGAGCTGAAAAGTGCAGTG
GAAGAATTAGATGTGACCTTCAAGGAAGGAGTCGAAGATCGCTTGTGTGC
ATACACACGATCTGTGGCGCATTTCCCGACGGCGATCAAGGAGTTTCAAT
GGCGGAATGGTTTCTTTTGGGACATTTCACAGGCCGCAGCCAAGGCCGGG
AAGGCTGATCCGTGTGCGACGCACTCGGCAATGCTCCAGCAATTAGGAGT
GGTTTAGAGCTGATTATAATGAAGAGGACATAGGACTGAGATTTGAGGAG
TTTGAAGGAGATCGGAGATGGCAAGTAAAGAATTGAAATGAGCGTAGCTG
TGTTCTCA
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protein sequence of jgi.p|Nanoce1779_2|583710

>mRNA_2890-protein ID=mRNA_2890-protein|Name=jgi.p|Nanoce1779_2|583710|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MMATATQHVVVGKGRVGEALAKMLGPKAIMVGRTDPVPSEGTGPIYIATR
NDDLAAVIEKTPPNRRKDLVFMQNGMLGTFLERSALQDNTQVLVYFAVAK
KGEAPTDGVTDLNPEGLTAAHGEWANDLAATLRAAGLSCHVLEKEPFRAA
MFEKLIWISSFMLVGAAHGGITVGEVEQSHRPQVVALIKELKSAVEELDV
TFKEGVEDRLCAYTRSVAHFPTAIKEFQWRNGFFWDISQAAAKAGKADPC
ATHSAMLQQLGVV*
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mRNA from alignment at scaffold_7:174719..175676-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2890 ID=mRNA_2890|Name=jgi.p|Nanoce1779_2|583710|organism=Nannochloropsis oceanica|type=mRNA|length=958bp|location=Sequence derived from alignment at scaffold_7:174719..175676- (Nannochloropsis oceanica)
ACAGCTTTGTCACCTCCACAAACCGTGCGCCTGCAGGTTACAACCCCCCA
AGAGCAACCGTCCGGATGATGGCAACCGCTACACAGCACGTCGTTGTCGG
CAAAGGTCGAGTGGGGGAAGCTTTGGCAAAAATGCTCGGGCCTAAGGCCA
TCATGGTAGGGCGGACAGACCCTGTCCCTTCGGAAGGTACGGGCCCTATC
TACATCGCCACACGGAACGACGACCTTGCCGCCGTCATCGAAAAGACACC
CCCCAATCGTCGCAAGGACCTTGTATTCATGCAAAACGGGATGCTAGGCA
CTTTCCTCGAAAGGTCTGCCCTTCAGGATAACACACAAGTTCTCGTGTAC
TTTGCTGTGGCCAAAAAGGGGGAGGCGCCGACGGACGGCGTCACTGACCT
TAACCCTGAAGGGCTGACCGCGGCTCATGGAGAGTGGGCAAATGACCTAG
CAGCGACGCTCAGAGCCGCAGGGTTAAGCTGTCACGTTTTAGAGAAAGAA
CCGTTTCGGGCGGCCATGTTTGAGAAGCTCATTTGGATATCATCGTTTAT
GTTGGTTGGTGCTGCGCACGGAGGGATTACGGTGGGGGAGGTGGAGCAGA
GTCATCGACCACAAGTTGTGGCGCTCATCAAGGAGCTGAAAAGTGCAGTG
GAAGAATTAGATGTGACCTTCAAGGAAGGAGTCGAAGATCGCTTGTGTGC
ATACACACGATCTGTGGCGCATTTCCCGACGGCGATCAAGGAGTTTCAAT
GGCGGAATGGTTTCTTTTGGGACATTTCACAGGCCGCAGCCAAGGCCGGG
AAGGCTGATCCGTGTGCGACGCACTCGGCAATGCTCCAGCAATTAGGAGT
GGTTTAGAGCTGATTATAATGAAGAGGACATAGGACTGAGATTTGAGGAG
TTTGAAGGAGATCGGAGATGGCAAGTAAAGAATTGAAATGAGCGTAGCTG
TGTTCTCA
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Coding sequence (CDS) from alignment at scaffold_7:174719..175676-

>mRNA_2890 ID=mRNA_2890|Name=jgi.p|Nanoce1779_2|583710|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_7:174719..175676- (Nannochloropsis oceanica)
ATGATGGCAACCGCTACACAGCACGTCGTTGTCGGCAAAGGTCGAGTGGG
GGAAGCTTTGGCAAAAATGCTCGGGCCTAAGGCCATCATGGTAGGGCGGA
CAGACCCTGTCCCTTCGGAAGGTACGGGCCCTATCTACATCGCCACACGG
AACGACGACCTTGCCGCCGTCATCGAAAAGACACCCCCCAATCGTCGCAA
GGACCTTGTATTCATGCAAAACGGGATGCTAGGCACTTTCCTCGAAAGGT
CTGCCCTTCAGGATAACACACAAGTTCTCGTGTACTTTGCTGTGGCCAAA
AAGGGGGAGGCGCCGACGGACGGCGTCACTGACCTTAACCCTGAAGGGCT
GACCGCGGCTCATGGAGAGTGGGCAAATGACCTAGCAGCGACGCTCAGAG
CCGCAGGGTTAAGCTGTCACGTTTTAGAGAAAGAACCGTTTCGGGCGGCC
ATGTTTGAGAAGCTCATTTGGATATCATCGTTTATGTTGGTTGGTGCTGC
GCACGGAGGGATTACGGTGGGGGAGGTGGAGCAGAGTCATCGACCACAAG
TTGTGGCGCTCATCAAGGAGCTGAAAAGTGCAGTGGAAGAATTAGATGTG
ACCTTCAAGGAAGGAGTCGAAGATCGCTTGTGTGCATACACACGATCTGT
GGCGCATTTCCCGACGGCGATCAAGGAGTTTCAATGGCGGAATGGTTTCT
TTTGGGACATTTCACAGGCCGCAGCCAAGGCCGGGAAGGCTGATCCGTGT
GCGACGCACTCGGCAATGCTCCAGCAATTAGGAGTGGTTTAG
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Synonyms
Publications