jgi.p|Nanoce1779_2|583704, mRNA_2888 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583704
Unique Name	mRNA_2888
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	965
Alignment location	scaffold_7:171356..172640 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583790
Track	FilteredModels2
ProteinId	583704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:171356..172640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583704	gene_2888	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583704	mRNA_2888-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2888	CDS_2888	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:171356..172640+
coding sequence from alignment at scaffold_7:171356..172640+

mRNA sequence

>mRNA_2888 ID=mRNA_2888|Name=jgi.p|Nanoce1779_2|583704|organism=Nannochloropsis oceanica|type=mRNA|length=965bp
AGGACGGTCCTTGTCCTCAATTTTCACCCTTAACGCCCCTTCACGGTGTC
GCAATCGCCACATCGTCATCATGTTGCGCTTCCCATCCCTCGTCGCGACC
ACCCTTCTCCTGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCGTTAT
GCCACGGCCAGCACTTCCGACCATGAGCAGCAACAGCCGTATGCTAATCG
CCCCCCTTTCCATGTCGAAGGACTTGGTTGGCTTTGGTGAAGATCTGGAC
GGCTCCGCCTGCCGCATCGGCATCGTCAAGACACGTTGGAACCCCGAAAT
CGTAGACTCCCTTTACGAAGGCGTGCGCGCTGCGCTGAAAGAAACAGGGG
TCAAGGATGCCAACATCTACGATACCACCGTTCCCGGCTCTTTTGAGTTG
CCATTGGCCGCGCGCTTTCTGGCGATGTCGCGGCAGTGTGACGTGGTTAT
TACGATTGGGTGCTTGATCAAGGGAGACACCATGCATTTTGAATATATTG
CCGAAGCGGTCACTAAGGGGTTGATGGACATCCAGCTGCAGACGACCATC
CCGGTCATTTTCGGCCTCCTGACCGTGCTGAACAAAGACCAGGCGATTGT
CCGTTCTAAGGGTGAGAACAATCACGGTATATCCTGGGGCAAGACTGCCG
TGGAAATGGCACTGCTGCGCACTGCCGCCATGGCCAAGGGGCCGAATAGG
GCAACGCTTCCCTTGACAGAGAAACCGGGTGATACGCCTGATGAAAAGAA
GCAGGAGCGCCAGTTTGGGTTCTAAAACGGCGTCCGAAGGAGGAGGAGAT
TGACGTGAAGCAGAGCATCAGTGAGCTTGGCAGGAAGGGGAGGAGAGTAG
CATGGAAGCAGCAGCACGGCCACTCTAGGCAGAGTCTACACTTTCACTGT
CTTGTATACACGCACACGTAAACCGTAACCAATCAACCCAAAAAGAACCA
AAAACACGGATGATA

protein sequence of jgi.p|Nanoce1779_2|583704

>mRNA_2888-protein ID=mRNA_2888-protein|Name=jgi.p|Nanoce1779_2|583704|organism=Nannochloropsis oceanica|type=polypeptide|length=235bp
MLRFPSLVATTLLLLACVLRQATAFVMPRPALPTMSSNSRMLIAPLSMSK
DLVGFGEDLDGSACRIGIVKTRWNPEIVDSLYEGVRAALKETGVKDANIY
DTTVPGSFELPLAARFLAMSRQCDVVITIGCLIKGDTMHFEYIAEAVTKG
LMDIQLQTTIPVIFGLLTVLNKDQAIVRSKGENNHGISWGKTAVEMALLR
TAAMAKGPNRATLPLTEKPGDTPDEKKQERQFGF*

mRNA from alignment at scaffold_7:171356..172640+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2888 ID=mRNA_2888|Name=jgi.p|Nanoce1779_2|583704|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp|location=Sequence derived from alignment at scaffold_7:171356..172640+ (Nannochloropsis oceanica)
AGGACGGTCCTTGTCCTCAATTTTCACCCTTAACGCCCCTTCACGGTGTC
GCAATCGCCACATCGTCATCATGTTGCGCTTCCCATCCCTCGTCGCGACC
ACCCTTCTCCTGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCGTTAT
GCCACGGCCAGCACTTCCGACCATGAGCAGCAACAGCCGTATGGTGCGTA
GCTTAGTTTTTACGGGCTTGTTCGTCCTCCCAAATCTCGCCTACCCTTTT
ATTTCCATAGAACAAACCGACGCACACACACCAACTGAACCCCCTTCAAC
GACTACGCCACAGCTAATCGCCCCCCTTTCCATGTCGAAGGACTTGGTTG
GCTTTGGTGAAGATCTGGACGGCTCCGCCTGCCGCATCGGCATCGTCAAG
ACACGTTGGAACCCCGAAATCGTAGACTCCCTTTACGAAGGCGTGCGCGC
TGCGCTGAAAGAAACAGGGGTCAAGGATGCCAACATCTACGATACCACCG
TTCCCGGCTCTTTTGAGTTGCCATTGGCCGCGCGCTTTCTGGCGATGTCG
CGGCAGTGTGACGTGGTTATTACGATTGGGTGCTTGATCAAGGGAGACAC
CATGCATTTTGAATATATTGCCGAAGCGGTCACTAAGGGGTTGATGGACG
TACGTACTATGAAGCTTAGCGCAAGGGATGACGGACTCAGACATGATAAC
AAACAATCATTTAATCCTATTGTCTATTAACCCCATTTATCCACTAAAAA
AAGATCCAGCTGCAGACGACCATCCCGGTCATTTTCGGCCTCCTGACCGT
GCTGAACAAAGACCAGGCGATTGTCCGTTCTAAGGGTGAGAACAATCACG
GTATATCCTGGGGCAAGACTGCCGTGGAAATGGCACTGCTGCGCACTGCC
GCCATGGCCAAGGGGCCGAATAGGGTGAGTTTATGTCGAGGGTAGGGAAG
GAGGAGGGGGTTGGGAGTGGGAAAGGGACAGATGAAAGGACTCATTCCAA
TTTGATATCCTTCAAAACAGGCAACGCTTCCCTTGACAGAGAAACCGGGT
GATACGCCTGATGAAAAGAAGCAGGAGCGCCAGTTTGGGTTCTAAAACGG
CGTCCGAAGGAGGAGGAGATTGACGTGAAGCAGAGCATCAGTGAGCTTGG
CAGGAAGGGGAGGAGAGTAGCATGGAAGCAGCAGCACGGCCACTCTAGGC
AGAGTCTACACTTTCACTGTCTTGTATACACGCACACGTAAACCGTAACC
AATCAACCCAAAAAGAACCAAAAACACGGATGATA

Coding sequence (CDS) from alignment at scaffold_7:171356..172640+

>mRNA_2888 ID=mRNA_2888|Name=jgi.p|Nanoce1779_2|583704|organism=Nannochloropsis oceanica|type=CDS|length=2820bp|location=Sequence derived from alignment at scaffold_7:171356..172640+ (Nannochloropsis oceanica)
ATGTTGCGCTTCCCATCCCTCGTCGCGACCACCCTTCTCCTGCTAGCATG
CGTGCTAAGACAGGCAACCGCGTTCGTTATGCCACGGCCAGCACTTCCGA
CCATGAGCAGCAACAGCCGTATGCTAATCGCCCCCCTTTCCATGTCGAAG
GACTTGGTTGGCTTTGGTGAAGATCTGGACGGCTCCGCCTGCCGCATCGG
CATCGTCAAGACACGTTGGAACCCCGAAATCGTAGACTCCCTTTACGAAG
GCGTGCGCGCTGCGCTGAAAGAAACAGGGGTCAAGGATGCCAACATCTAC
GATACCACCGTTCCCGGCTCTTTTGAGTTGCCATTGGCCGCGCGCTTTCT
GGCGATGTCGCGGCAGTGTGACGTGGTTATTACGATTGGGTGCTTGATCA
AGGGAGACACCATGCATTTTGAATATATTGCCGAAGCGGTCACTAAGGGG
TTGATGGACATCCAGCTGCAGACGACCATCCCGGTCATTTTCGGCCTCCT
GACCGTGCTGAACAAAGACCAGGCGATTGTCCGTTCTAAGGGTGAGAACA
ATCACGGTATATCCTGGGGCAAGACTGCCGTGGAAATGGCACTGCTGCGC
ACTGCCGCCATGGCCAAGGGGCCGAATAGGGCAACGCTTCCCTTGACAGA
GAAACCGGGTGATACGCCTGATGAAAAGAAGCAGGAGCGCCAGTTTGGGT
TCTAAATGTTGCGCTTCCCATCCCTCGTCGCGACCACCCTTCTCCTGCTA
GCATGCGTGCTAAGACAGGCAACCGCGTTCGTTATGCCACGGCCAGCACT
TCCGACCATGAGCAGCAACAGCCGTATGCTAATCGCCCCCCTTTCCATGT
CGAAGGACTTGGTTGGCTTTGGTGAAGATCTGGACGGCTCCGCCTGCCGC
ATCGGCATCGTCAAGACACGTTGGAACCCCGAAATCGTAGACTCCCTTTA
CGAAGGCGTGCGCGCTGCGCTGAAAGAAACAGGGGTCAAGGATGCCAACA
TCTACGATACCACCGTTCCCGGCTCTTTTGAGTTGCCATTGGCCGCGCGC
TTTCTGGCGATGTCGCGGCAGTGTGACGTGGTTATTACGATTGGGTGCTT
GATCAAGGGAGACACCATGCATTTTGAATATATTGCCGAAGCGGTCACTA
AGGGGTTGATGGACATCCAGCTGCAGACGACCATCCCGGTCATTTTCGGC
CTCCTGACCGTGCTGAACAAAGACCAGGCGATTGTCCGTTCTAAGGGTGA
GAACAATCACGGTATATCCTGGGGCAAGACTGCCGTGGAAATGGCACTGC
TGCGCACTGCCGCCATGGCCAAGGGGCCGAATAGGGCAACGCTTCCCTTG
ACAGAGAAACCGGGTGATACGCCTGATGAAAAGAAGCAGGAGCGCCAGTT
TGGGTTCTAAATGTTGCGCTTCCCATCCCTCGTCGCGACCACCCTTCTCC
TGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCGTTATGCCACGGCCA
GCACTTCCGACCATGAGCAGCAACAGCCGTATGCTAATCGCCCCCCTTTC
CATGTCGAAGGACTTGGTTGGCTTTGGTGAAGATCTGGACGGCTCCGCCT
GCCGCATCGGCATCGTCAAGACACGTTGGAACCCCGAAATCGTAGACTCC
CTTTACGAAGGCGTGCGCGCTGCGCTGAAAGAAACAGGGGTCAAGGATGC
CAACATCTACGATACCACCGTTCCCGGCTCTTTTGAGTTGCCATTGGCCG
CGCGCTTTCTGGCGATGTCGCGGCAGTGTGACGTGGTTATTACGATTGGG
TGCTTGATCAAGGGAGACACCATGCATTTTGAATATATTGCCGAAGCGGT
CACTAAGGGGTTGATGGACATCCAGCTGCAGACGACCATCCCGGTCATTT
TCGGCCTCCTGACCGTGCTGAACAAAGACCAGGCGATTGTCCGTTCTAAG
GGTGAGAACAATCACGGTATATCCTGGGGCAAGACTGCCGTGGAAATGGC
ACTGCTGCGCACTGCCGCCATGGCCAAGGGGCCGAATAGGGCAACGCTTC
CCTTGACAGAGAAACCGGGTGATACGCCTGATGAAAAGAAGCAGGAGCGC
CAGTTTGGGTTCTAAATGTTGCGCTTCCCATCCCTCGTCGCGACCACCCT
TCTCCTGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCGTTATGCCAC
GGCCAGCACTTCCGACCATGAGCAGCAACAGCCGTATGCTAATCGCCCCC
CTTTCCATGTCGAAGGACTTGGTTGGCTTTGGTGAAGATCTGGACGGCTC
CGCCTGCCGCATCGGCATCGTCAAGACACGTTGGAACCCCGAAATCGTAG
ACTCCCTTTACGAAGGCGTGCGCGCTGCGCTGAAAGAAACAGGGGTCAAG
GATGCCAACATCTACGATACCACCGTTCCCGGCTCTTTTGAGTTGCCATT
GGCCGCGCGCTTTCTGGCGATGTCGCGGCAGTGTGACGTGGTTATTACGA
TTGGGTGCTTGATCAAGGGAGACACCATGCATTTTGAATATATTGCCGAA
GCGGTCACTAAGGGGTTGATGGACATCCAGCTGCAGACGACCATCCCGGT
CATTTTCGGCCTCCTGACCGTGCTGAACAAAGACCAGGCGATTGTCCGTT
CTAAGGGTGAGAACAATCACGGTATATCCTGGGGCAAGACTGCCGTGGAA
ATGGCACTGCTGCGCACTGCCGCCATGGCCAAGGGGCCGAATAGGGCAAC
GCTTCCCTTGACAGAGAAACCGGGTGATACGCCTGATGAAAAGAAGCAGG
AGCGCCAGTTTGGGTTCTAA

Synonyms

Publications