jgi.p|Nanoce1779_2|553299, mRNA_2887 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553299
Unique Name	mRNA_2887
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3054
Alignment location	scaffold_7:169752..173021 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553385
Track	FilteredModels2
ProteinId	553299

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:169752..173021 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553299	gene_2887	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553299	mRNA_2887-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2887	CDS_2887	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:169752..173021+
coding sequence from alignment at scaffold_7:169752..173021+

mRNA sequence

>mRNA_2887 ID=mRNA_2887|Name=jgi.p|Nanoce1779_2|553299|organism=Nannochloropsis oceanica|type=mRNA|length=3054bp
GGGCGGGTTTTGGTGTTGCTGTATCAGGGAGGCCGCGTCACTACACAAGA
CGACAGTTGCCAGAACCACCGTCAGCATGTCCCACCCTCTCTTGAAGGCG
CAGTCTTGTGGCACGACCCACTTCCTCATGTCCCAAGATGAAACCGATGG
GAAGGGCCACCACCGCAATACCCACCATCGACCACGCCCTCGTTGCTTTT
GGCGGACAGAGACGAGCTTGCTGCTGTAGAGGGAGGAGGGGAAGGGGGTA
GGGTTGGGCATGTTGGAGGAGGTGAAGGAGGACGATGAATGGAAAGAATG
GCTGTTAAGTCGGCTGTTGCGGACAGGATGAGCGTGCGGGAGGCGGAGGG
AGGAAGAAGGTGGCCTTTTGGATGGCATTGTCGTTGGTGCTCCCATTCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTGGTGCCAAAGGAGTGGTCGCTCCT
GTTACTGCCAGTGCCATCACCATTGACGGCTCGACGCCGTCGGAGTGCTT
GCAGCGGAGATTGTTGCCGCGTTGCGGTCGTCGCGGCCAGAATCTCCGTG
TCTGTAATTATCGACTCCTCCTCCTCCCCTTCCCCGCTTTCCACCGCTGC
CGCCTCCTCCCCCTCCTCCTCCTCTTCGTCCTCTTTTTGTCGTCCTTCGA
GATGTTGGGGCTGTATTCTTGTTACCAAGGGCAAGGAAAGGCCGGCCGTG
AGGCGCTGTCGTCGGGGTACTTTAGAAACAGGTCGTCGCACCTCGTCCTC
TTCTTCGTCCTCCATCTCTTCCTTCTCCTCTTCCTTGTCATCATCAAATG
TAAAAGCCGCATCTGGCAAACGACTTTTTACCTTGGTCTTGTTGCTATCA
GATCGATGTGCGATGCGGTAAGTGCAGTGCGTGCACCTGCCCTCTTTGTG
CATTTGCGCTTGTTGCGCTGCAGATGGGGAGGACGAGGAGGGGGAGGAGG
CGACCGACACCCCCCCGGAGTTGATGTGGTCAAGCTGGGCGGTGGGGATT
GGATAAGCACGTCGATCGCGCCTGCGCTTTTTGTTGGCCATATAATTACT
CATGGTGCCGGGCGGAGGTGGAGTATAGTGGGGCATCGCTTCCGATTGGC
AGTTGACAAACAGGCCTCCCCGGTCGCACCCGCTCGCGGGTGGCGTATCA
GAAAAGCCTGTGAATGTTGTGAAGTCCATGGTGGTGAACGACAACGGCAA
GTCGATGAGAGTGTGCTAGGTTATGAGTTCCCGGGCGCAAGCGTTTCTTC
GCCGAGGTGTCCGAGGCTCCAGAAGCAGCATCATCGCAATGGCTGCACAT
AGCAGCAGCGGCACATTTACAGCCAGGGCCTGACCAGCGCGAGCGTTATT
ACACCCATTAGCTTGTTTTGCATGTGCCTGTCAAGTGTGTGGGGATCACG
TGATGGCGGCATAGCTATTATAGCTAGGAAACGGTGCCTCTCTCAGGAAA
CAGGTGCAGGCACAAGAGGAGGACCGTGAGCGAAGCAACTTCTGCGTCGT
CGTCTCACTACATTGCGGCTTTTCTTTGGTCATCCAAAACACCATACACC
GTCACACACTCCCTCAGATTCCACTTAAGTCTCATCCTTCCTTTCCCCCT
CTTTAGGACGGTCCTTGTCCTCAATTTTCACCCTTAACGCCCCTTCACGG
TGTCGCAATCGCCACATCGTCATCATGTTGCGCTTCCCATCCCTCGTCGC
GACCACCCTTCTCCTGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCG
TTATGCCACGGCCAGCACTTCCGACCATGAGCAGCAACAGCCGTATGCTA
ATCGCCCCCCTTTCCATGTCGAAGGACTTGGTTGGCTTTGGTGAAGATCT
GGACGGCTCCGCCTGCCGCATCGGCATCGTCAAGACACGTTGGAACCCCG
AAATCGTAGACTCCCTTTACGAAGGCGTGCGCGCTGCGCTGAAAGAAACA
GGGGTCAAGGATGCCAACATCTACGATACCACCGTTCCCGGCTCTTTTGA
GTTGCCATTGGCCGCGCGCTTTCTGGCGATGTCGCGGCAGTGTGACGTGG
TTATTACGATTGGGTGCTTGATCAAGGGAGACACCATGCATTTTGAATAT
ATTGCCGAAGCGGTCACTAAGGGGTTGATGGACGTACGTACTATGAAGCT
TAGCGCAAGGGATGACGGACTCAGACATGATAACAAACAATCATTTAATC
CTATTGTCTATTAACCCCATTTATCCACTAAAAAAAGATCCAGCTGCAGA
CGACCATCCCGGTCATTTTCGGCCTCCTGACCGTGCTGAACAAAGACCAG
GCGATTGTCCGTTCTAAGGGTGAGAACAATCACGGTATATCCTGGGGCAA
GACTGCCGTGGAAATGGCACTGCTGCGCACTGCCGCCATGGCCAAGGGGC
CGAATAGGGCAACGCTTCCCTTGACAGAGAAACCGGGTGATACGCCTGAT
GAAAAGAAGCAGGAGCGCCAGTTTGGGTTCTAAAACGGCGTCCGAAGGAG
GAGGAGATTGACGTGAAGCAGAGCATCAGTGAGCTTGGCAGGAAGGGGAG
GAGAGTAGCATGGAAGCAGCAGCACGGCCACTCTAGGCAGAGTCTACACT
TTCACTGTCTTGTATACACGCACACGTAAACCGTAACCAATCAACCCAAA
AAGAACCAAAAACACGGATGATACAAGTAATCCAGAGGGAAGATTGCTTT
GGGGGGGTTCTTCTTCCCATGACCGCGTCTAGAGACCTGCTTTGCACAAC
ATTTGCGTTCATCAGAATAAGAATGAGTTTGATGTGTAACCAATTTCATG
CTGTAGTCAAAATCGATGGAAACGTATGTAAATGAGATGAGGTTTAAAAA
GTTTTTAAGTTTAACCTCCTGTCTCATTTTCTCAATTCCACCCTCCCCAC
ACTCATTCTATCCAAGATTTGTCACACGTGCCTAAAACAGGCCAAAATCA
CACACCAAAAAGCATGGCAGTGGCACGGCGAGGGGTGGTGGTCACAGGAA
TCGGGATTGTCAGCCCTTTGGGCGTGGGCACCAAGGCAACCTGGGATGCC
CTCT

protein sequence of jgi.p|Nanoce1779_2|553299

>mRNA_2887-protein ID=mRNA_2887-protein|Name=jgi.p|Nanoce1779_2|553299|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MERMAVKSAVADRMSVREAEGGRRWPFGWHCRWCSHSGAGAGAGAGGAKG
VVAPVTASAITIDGSTPSECLQRRLLPRCGRRGQNLRVCNYRLLLLPFPA
FHRCRLLPLLLLFVLFLSSFEMLGLYSCYQGQGKAGREALSSGYFRNRSS
HLVLFFVLHLFLLLFLVIIKCKSRIWQTTFYLGLVAIRSMCDAVSAVRAP
ALFVHLRLLRCRWGGRGGGGGDRHPPGVDVVKLGGGDWISTSIAPALFVG
HIITHGAGRRWSIVGHRFRLAVDKQASPVAPARGWRIRKACECCEVHGGE
RQRQVDESVLGYEFPGASVSSPRCPRLQKQHHRNGCT*

mRNA from alignment at scaffold_7:169752..173021+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2887 ID=mRNA_2887|Name=jgi.p|Nanoce1779_2|553299|organism=Nannochloropsis oceanica|type=mRNA|length=3270bp|location=Sequence derived from alignment at scaffold_7:169752..173021+ (Nannochloropsis oceanica)
GGGCGGGTTTTGGTGTTGCTGTATCAGGGAGGCCGCGTCACTACACAAGA
CGACAGTTGCCAGAACCACCGTCAGCATGTCCCACCCTCTCTTGAAGGCG
CAGTCTTGTGGCACGACCCACTTCCTCATGTCCCAAGATGAAACCGATGG
GAAGGGCCACCACCGCAATACCCACCATCGACCACGCCCTCGTTGCTTTT
GGCGGACAGAGACGAGCTTGCTGCTGTAGAGGGAGGAGGGGAAGGGGGTA
GGGTTGGGCATGTTGGAGGAGGTGAAGGAGGACGATGAATGGAAAGAATG
GCTGTTAAGTCGGCTGTTGCGGACAGGATGAGCGTGCGGGAGGCGGAGGG
AGGAAGAAGGTGGCCTTTTGGATGGCATTGTCGTTGGTGCTCCCATTCTG
GTGCTGGTGCTGGTGCTGGTGCTGGTGGTGCCAAAGGAGTGGTCGCTCCT
GTTACTGCCAGTGCCATCACCATTGACGGCTCGACGCCGTCGGAGTGCTT
GCAGCGGAGATTGTTGCCGCGTTGCGGTCGTCGCGGCCAGAATCTCCGTG
TCTGTAATTATCGACTCCTCCTCCTCCCCTTCCCCGCTTTCCACCGCTGC
CGCCTCCTCCCCCTCCTCCTCCTCTTCGTCCTCTTTTTGTCGTCCTTCGA
GATGTTGGGGCTGTATTCTTGTTACCAAGGGCAAGGAAAGGCCGGCCGTG
AGGCGCTGTCGTCGGGGTACTTTAGAAACAGGTCGTCGCACCTCGTCCTC
TTCTTCGTCCTCCATCTCTTCCTTCTCCTCTTCCTTGTCATCATCAAATG
TAAAAGCCGCATCTGGCAAACGACTTTTTACCTTGGTCTTGTTGCTATCA
GATCGATGTGCGATGCGGTAAGTGCAGTGCGTGCACCTGCCCTCTTTGTG
CATTTGCGCTTGTTGCGCTGCAGATGGGGAGGACGAGGAGGGGGAGGAGG
CGACCGACACCCCCCCGGAGTTGATGTGGTCAAGCTGGGCGGTGGGGATT
GGATAAGCACGTCGATCGCGCCTGCGCTTTTTGTTGGCCATATAATTACT
CATGGTGCCGGGCGGAGGTGGAGTATAGTGGGGCATCGCTTCCGATTGGC
AGTTGACAAACAGGCCTCCCCGGTCGCACCCGCTCGCGGGTGGCGTATCA
GAAAAGCCTGTGAATGTTGTGAAGTCCATGGTGGTGAACGACAACGGCAA
GTCGATGAGAGTGTGCTAGGTTATGAGTTCCCGGGCGCAAGCGTTTCTTC
GCCGAGGTGTCCGAGGCTCCAGAAGCAGCATCATCGCAATGGCTGCACAT
AGCAGCAGCGGCACATTTACAGCCAGGGCCTGACCAGCGCGAGCGTTATT
ACACCCATTAGCTTGTTTTGCATGTGCCTGTCAAGTGTGTGGGGATCACG
TGATGGCGGCATAGCTATTATAGCTAGGAAACGGTGCCTCTCTCAGGAAA
CAGGTGCAGGCACAAGAGGAGGACCGTGAGCGAAGCAACTTCTGCGTCGT
CGTCTCACTACATTGCGGCTTTTCTTTGGTCATCCAAAACACCATACACC
GTCACACACTCCCTCAGATTCCACTTAAGTCTCATCCTTCCTTTCCCCCT
CTTTAGGACGGTCCTTGTCCTCAATTTTCACCCTTAACGCCCCTTCACGG
TGTCGCAATCGCCACATCGTCATCATGTTGCGCTTCCCATCCCTCGTCGC
GACCACCCTTCTCCTGCTAGCATGCGTGCTAAGACAGGCAACCGCGTTCG
TTATGCCACGGCCAGCACTTCCGACCATGAGCAGCAACAGCCGTATGGTG
CGTAGCTTAGTTTTTACGGGCTTGTTCGTCCTCCCAAATCTCGCCTACCC
TTTTATTTCCATAGAACAAACCGACGCACACACACCAACTGAACCCCCTT
CAACGACTACGCCACAGCTAATCGCCCCCCTTTCCATGTCGAAGGACTTG
GTTGGCTTTGGTGAAGATCTGGACGGCTCCGCCTGCCGCATCGGCATCGT
CAAGACACGTTGGAACCCCGAAATCGTAGACTCCCTTTACGAAGGCGTGC
GCGCTGCGCTGAAAGAAACAGGGGTCAAGGATGCCAACATCTACGATACC
ACCGTTCCCGGCTCTTTTGAGTTGCCATTGGCCGCGCGCTTTCTGGCGAT
GTCGCGGCAGTGTGACGTGGTTATTACGATTGGGTGCTTGATCAAGGGAG
ACACCATGCATTTTGAATATATTGCCGAAGCGGTCACTAAGGGGTTGATG
GACGTACGTACTATGAAGCTTAGCGCAAGGGATGACGGACTCAGACATGA
TAACAAACAATCATTTAATCCTATTGTCTATTAACCCCATTTATCCACTA
AAAAAAGATCCAGCTGCAGACGACCATCCCGGTCATTTTCGGCCTCCTGA
CCGTGCTGAACAAAGACCAGGCGATTGTCCGTTCTAAGGGTGAGAACAAT
CACGGTATATCCTGGGGCAAGACTGCCGTGGAAATGGCACTGCTGCGCAC
TGCCGCCATGGCCAAGGGGCCGAATAGGGTGAGTTTATGTCGAGGGTAGG
GAAGGAGGAGGGGGTTGGGAGTGGGAAAGGGACAGATGAAAGGACTCATT
CCAATTTGATATCCTTCAAAACAGGCAACGCTTCCCTTGACAGAGAAACC
GGGTGATACGCCTGATGAAAAGAAGCAGGAGCGCCAGTTTGGGTTCTAAA
ACGGCGTCCGAAGGAGGAGGAGATTGACGTGAAGCAGAGCATCAGTGAGC
TTGGCAGGAAGGGGAGGAGAGTAGCATGGAAGCAGCAGCACGGCCACTCT
AGGCAGAGTCTACACTTTCACTGTCTTGTATACACGCACACGTAAACCGT
AACCAATCAACCCAAAAAGAACCAAAAACACGGATGATACAAGTAATCCA
GAGGGAAGATTGCTTTGGGGGGGTTCTTCTTCCCATGACCGCGTCTAGAG
ACCTGCTTTGCACAACATTTGCGTTCATCAGAATAAGAATGAGTTTGATG
TGTAACCAATTTCATGCTGTAGTCAAAATCGATGGAAACGTATGTAAATG
AGATGAGGTTTAAAAAGTTTTTAAGTTTAACCTCCTGTCTCATTTTCTCA
ATTCCACCCTCCCCACACTCATTCTATCCAAGATTTGTCACACGTGCCTA
AAACAGGCCAAAATCACACACCAAAAAGCATGGCAGTGGCACGGCGAGGG
GTGGTGGTCACAGGAATCGGGATTGTCAGCCCTTTGGGCGTGGGCACCAA
GGCAACCTGGGATGCCCTCT

Coding sequence (CDS) from alignment at scaffold_7:169752..173021+

>mRNA_2887 ID=mRNA_2887|Name=jgi.p|Nanoce1779_2|553299|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_7:169752..173021+ (Nannochloropsis oceanica)
ATGGAAAGAATGGCTGTTAAGTCGGCTGTTGCGGACAGGATGAGCGTGCG
GGAGGCGGAGGGAGGAAGAAGGTGGCCTTTTGGATGGCATTGTCGTTGGT
GCTCCCATTCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGTGCCAAAGGA
GTGGTCGCTCCTGTTACTGCCAGTGCCATCACCATTGACGGCTCGACGCC
GTCGGAGTGCTTGCAGCGGAGATTGTTGCCGCGTTGCGGTCGTCGCGGCC
AGAATCTCCGTGTCTGTAATTATCGACTCCTCCTCCTCCCCTTCCCCGCT
TTCCACCGCTGCCGCCTCCTCCCCCTCCTCCTCCTCTTCGTCCTCTTTTT
GTCGTCCTTCGAGATGTTGGGGCTGTATTCTTGTTACCAAGGGCAAGGAA
AGGCCGGCCGTGAGGCGCTGTCGTCGGGGTACTTTAGAAACAGGTCGTCG
CACCTCGTCCTCTTCTTCGTCCTCCATCTCTTCCTTCTCCTCTTCCTTGT
CATCATCAAATGTAAAAGCCGCATCTGGCAAACGACTTTTTACCTTGGTC
TTGTTGCTATCAGATCGATGTGCGATGCGGTAAGTGCAGTGCGTGCACCT
GCCCTCTTTGTGCATTTGCGCTTGTTGCGCTGCAGATGGGGAGGACGAGG
AGGGGGAGGAGGCGACCGACACCCCCCCGGAGTTGATGTGGTCAAGCTGG
GCGGTGGGGATTGGATAAGCACGTCGATCGCGCCTGCGCTTTTTGTTGGC
CATATAATTACTCATGGTGCCGGGCGGAGGTGGAGTATAGTGGGGCATCG
CTTCCGATTGGCAGTTGACAAACAGGCCTCCCCGGTCGCACCCGCTCGCG
GGTGGCGTATCAGAAAAGCCTGTGAATGTTGTGAAGTCCATGGTGGTGAA
CGACAACGGCAAGTCGATGAGAGTGTGCTAGGTTATGAGTTCCCGGGCGC
AAGCGTTTCTTCGCCGAGGTGTCCGAGGCTCCAGAAGCAGCATCATCGCA
ATGGCTGCACATAG

Synonyms

Publications