jgi.p|Nanoce1779_2|526528, mRNA_2884 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526528
Unique NamemRNA_2884
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length390
Alignment locationscaffold_7:164219..165121 -

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Properties
Property NameValue
TranscriptId526614
TrackFilteredModels2
ProteinId526528
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:164219..165121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526528gene_2884Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526528mRNA_2884-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2884CDS_2884Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2884 ID=mRNA_2884|Name=jgi.p|Nanoce1779_2|526528|organism=Nannochloropsis oceanica|type=mRNA|length=390bp
ATGAGTGAAGGTGGCGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGC
TGACCTGACTGTCTCGATTTTGGACCTCATTCAGCAAGCCAACAACTACA
AGCAGCTTAAAAAGGGAGCCAACGAAGCCACCAAGGCATTGAACCGCGGC
ATCGCCGAGCTCATCATCATGGCCGCCGACGCTGAGCCGCTTGAAATTCT
GTTGCACCTACCGTTGTTGTGTGAGGATAAGAATGTCCCCTACGTCTTCG
TTCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTT
ATCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGAT
CAACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAA
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protein sequence of jgi.p|Nanoce1779_2|526528

>mRNA_2884-protein ID=mRNA_2884-protein|Name=jgi.p|Nanoce1779_2|526528|organism=Nannochloropsis oceanica|type=polypeptide|length=130bp
MSEGGEISKKAFPLASADLTVSILDLIQQANNYKQLKKGANEATKALNRG
IAELIIMAADAEPLEILLHLPLLCEDKNVPYVFVPAKIALGRACGVTRPV
ISCAILSNEASQLKDQINSLKDRIEALLI*
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mRNA from alignment at scaffold_7:164219..165121-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2884 ID=mRNA_2884|Name=jgi.p|Nanoce1779_2|526528|organism=Nannochloropsis oceanica|type=mRNA|length=903bp|location=Sequence derived from alignment at scaffold_7:164219..165121- (Nannochloropsis oceanica)
ATGAGTGAAGGTGGCGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGC
TGACCTGACTGTCTCGATTTTGGACCTCATTCAGCAAGCCAACAACTACA
AGCAGCTTAAAAAGGGAGCCAACGAAGGTAAGGATTGAAACCGAGGGACT
GAAAGGAGGGAAGACGATCGAGAAAGCGGAAAATGGCAATCACCAGAAAG
CTGTGTGGCAGTCTCGGAGATGGCGTGCAGGCGAGCTAGAGGGACATCAG
GAAGGAAGGAGGACCGGAGGATGGGTGGGTTGGGTTTGATTAAGAGGAGT
AAGAAGAAGATGAGACGATTGCGGTATCCTCATGTCTTTACGTCTGTCCA
AGACTCAATATTCGCGATTGGTAATCGCCTCACCCCCCTCTCTCCTTCTC
CCCTCGCACAGCCACCAAGGCATTGAACCGCGGCATCGCCGAGCTCATCA
TCATGGCCGCCGACGCTGAGCCGCTTGAAATTCTGTTGCACCTACCGTTG
TTGTGTGAGGATAAGGTAATGTTAGATAGAACGACAAGCGGGAGGGTGGG
AGAGTGAGCGCGGGGGATGGGATACGGTAGTATCAACTCTACAACATATA
GGACATAATTTTTGCTCCTCGCACCTGTGTTATAATCTAGTGCATCCATG
TGTCCTCACTCATGATAGTATTGCTTCATTTTTGAATAACCATTCTTCCC
TTTCCTCCTCTCCTCCTTTCCTCCCTTCCTCCTTCCCTATCCAGAATGTC
CCCTACGTCTTCGTTCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGT
GACTCGGCCTGTTATCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGT
TGAAAGATCAGATCAACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATT
TAA
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Coding sequence (CDS) from alignment at scaffold_7:164219..165121-

>mRNA_2884 ID=mRNA_2884|Name=jgi.p|Nanoce1779_2|526528|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_7:164219..165121- (Nannochloropsis oceanica)
AATGTCCCCTACGTCTTCGTTCCGGCCAAGATTGCGCTAGGCCGTGCTTG
TGGTGTGACTCGGCCTGTTATCTCTTGTGCAATCCTGTCGAATGAAGCGT
CCCAGTTGAAAGATCAGATCAACTCCTTGAAAGATCGGATCGAAGCCCTT
TTGATTTAACCACCAAGGCATTGAACCGCGGCATCGCCGAGCTCATCATC
ATGGCCGCCGACGCTGAGCCGCTTGAAATTCTGTTGCACCTACCGTTGTT
GTGTGAGGATAAGATGAGTGAAGGTGGCGAAATCAGTAAGAAGGCCTTTC
CCCTAGCCAGTGCTGACCTGACTGTCTCGATTTTGGACCTCATTCAGCAA
GCCAACAACTACAAGCAGCTTAAAAAGGGAGCCAACGAAGAATGTCCCCT
ACGTCTTCGTTCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACT
CGGCCTGTTATCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAA
AGATCAGATCAACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAAC
CACCAAGGCATTGAACCGCGGCATCGCCGAGCTCATCATCATGGCCGCCG
ACGCTGAGCCGCTTGAAATTCTGTTGCACCTACCGTTGTTGTGTGAGGAT
AAGATGAGTGAAGGTGGCGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAG
TGCTGACCTGACTGTCTCGATTTTGGACCTCATTCAGCAAGCCAACAACT
ACAAGCAGCTTAAAAAGGGAGCCAACGAAGAATGTCCCCTACGTCTTCGT
TCCGGCCAAGATTGCGCTAGGCCGTGCTTGTGGTGTGACTCGGCCTGTTA
TCTCTTGTGCAATCCTGTCGAATGAAGCGTCCCAGTTGAAAGATCAGATC
AACTCCTTGAAAGATCGGATCGAAGCCCTTTTGATTTAACCACCAAGGCA
TTGAACCGCGGCATCGCCGAGCTCATCATCATGGCCGCCGACGCTGAGCC
GCTTGAAATTCTGTTGCACCTACCGTTGTTGTGTGAGGATAAGATGAGTG
AAGGTGGCGAAATCAGTAAGAAGGCCTTTCCCCTAGCCAGTGCTGACCTG
ACTGTCTCGATTTTGGACCTCATTCAGCAAGCCAACAACTACAAGCAGCT
TAAAAAGGGAGCCAACGAAG
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Synonyms
Publications