jgi.p|Nanoce1779_2|583684, mRNA_2883 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583684
Unique NamemRNA_2883
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_7:162569..163478 +

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Properties
Property NameValue
TranscriptId583770
TrackFilteredModels2
ProteinId583684
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:162569..163478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583684gene_2883Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583684mRNA_2883-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2883CDS_2883Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2883 ID=mRNA_2883|Name=jgi.p|Nanoce1779_2|583684|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
CCAGAATTAAGCAGGAAAGAGGCGATGAGCCGCGGAAACCTTCCTCCCTT
CCCTCCTCCTCCTCCTCCACCTCTGCCTTCTCCTCTACCTCATCCTCCTC
ATCCTCCACCCCCATCCTCTCCTCCGGCGCAGTCCCTCGCAAGCATTCCG
CCTTAGCCCTTCGACCCCTCCACATATGGCTGCTAGAGAGTATCCCCTCT
TCCTATACATCCTCCTCCACCTTTTCCTCCCCGTGTCTAGATTTAGTCTT
CCCCTCTTGCTCCTCCTCCACAACTATCGCCCTCTCCCGCGCCTCAGGCC
TCACCCCAACGCAGATTACGACGTTCTTCGAAAATTACCGATACAAACAC
CTCTCTCCCCTTATGGCGGGGACGCGGAAACCCGCTTCGTTTTATGAAGT
CATTTTAGCCTTCAAAATGAATCTACCTCTCACCGCTTGGCTTACGGCAG
GTGGGAAGAGAAAGAGGGCGCTGGGGAGGGAGGAAGGAGGCAGGGAGGTG
ACGAGAGGGAAGGAGTTTGCGTCACCGCAACGACAACCGCAACGGCAGCA
GCGGAGGAAGAACGCTAAAAAGGGCAAGAAAAACAAAAAGAAGAAGAAGA
AGAAGAAGAAGGAAGAGGAGGAGGAAGATACGGATGAAGAAGAAATGGAA
GAAGTGCAGGAGGGAGAGAATGAGGTAGTGAAGGAGGAAGGCTTCTATCG
TCGTCTTTCGGCTCGTCGCCGG
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protein sequence of jgi.p|Nanoce1779_2|583684

>mRNA_2883-protein ID=mRNA_2883-protein|Name=jgi.p|Nanoce1779_2|583684|organism=Nannochloropsis oceanica|type=polypeptide|length=74bp
MAAREYPLFLYILLHLFLPVSRFSLPLLLLLHNYRPLPRLRPHPNADYDV
LRKLPIQTPLSPYGGDAETRFVL*
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mRNA from alignment at scaffold_7:162569..163478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2883 ID=mRNA_2883|Name=jgi.p|Nanoce1779_2|583684|organism=Nannochloropsis oceanica|type=mRNA|length=910bp|location=Sequence derived from alignment at scaffold_7:162569..163478+ (Nannochloropsis oceanica)
CCAGAATTAAGCAGGAAAGAGGCGATGAGCCGCGGAAACCTTCCTCCCTT
CCCTCCTCCTCCTCCTCCACCTCTGCCTTCTCCTCTACCTCATCCTCCTC
ATCCTCCACCCCCATCCTCTCCTCCGGCGCAGTCCCTCGCAAGCATTCCG
CCTTAGCCCTTCGACCCCTCCACATATGGCTGCTAGAGAGTATCCCCTCT
TCCTATACATCCTCCTCCACCTTTTCCTCCCCGTGTCTAGATTTAGTCTT
CCCCTCTTGCTCCTCCTCCACAACTATCGCCCTCTCCCGCGCCTCAGGCC
TCACCCCAACGCAGATTACGACGTTCTTCGAAAATTACCGGTTTGTATTG
TGCTCCATTCCCTTCTCTGTCCCTCCTCCATCATCCATCCATCCATCCTT
CCATTCCTCCTTACTTTCTCCTCTTCACTGTGTCCTCCTTTTGGCTAATT
TGGATGCCTCCCGTGCTCATCTGTGCATCCATCGTCCCTCCCTCCCTCCA
TCCCTCCCTCCCTCCCTCCCTGCACAAGATACAAACACCTCTCTCCCCTT
ATGGCGGGGACGCGGAAACCCGCTTCGTTTTATGAAGTCATTTTAGCCTT
CAAAATGAATCTACCTCTCACCGCTTGGCTTACGGCAGGTGGGAAGAGAA
AGAGGGCGCTGGGGAGGGAGGAAGGAGGCAGGGAGGTGACGAGAGGGAAG
GAGTTTGCGTCACCGCAACGACAACCGCAACGGCAGCAGCGGAGGAAGAA
CGCTAAAAAGGGCAAGAAAAACAAAAAGAAGAAGAAGAAGAAGAAGAAGG
AAGAGGAGGAGGAAGATACGGATGAAGAAGAAATGGAAGAAGTGCAGGAG
GGAGAGAATGAGGTAGTGAAGGAGGAAGGCTTCTATCGTCGTCTTTCGGC
TCGTCGCCGG
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Coding sequence (CDS) from alignment at scaffold_7:162569..163478+

>mRNA_2883 ID=mRNA_2883|Name=jgi.p|Nanoce1779_2|583684|organism=Nannochloropsis oceanica|type=CDS|length=444bp|location=Sequence derived from alignment at scaffold_7:162569..163478+ (Nannochloropsis oceanica)
ATGGCTGCTAGAGAGTATCCCCTCTTCCTATACATCCTCCTCCACCTTTT
CCTCCCCGTGTCTAGATTTAGTCTTCCCCTCTTGCTCCTCCTCCACAACT
ATCGCCCTCTCCCGCGCCTCAGGCCTCACCCCAACGCAGATTACGACGTT
CTTCGAAAATTACCGATACAAACACCTCTCTCCCCTTATGGCGGGGACGC
GGAAACCCGCTTCGTTTTATGAATGGCTGCTAGAGAGTATCCCCTCTTCC
TATACATCCTCCTCCACCTTTTCCTCCCCGTGTCTAGATTTAGTCTTCCC
CTCTTGCTCCTCCTCCACAACTATCGCCCTCTCCCGCGCCTCAGGCCTCA
CCCCAACGCAGATTACGACGTTCTTCGAAAATTACCGATACAAACACCTC
TCTCCCCTTATGGCGGGGACGCGGAAACCCGCTTCGTTTTATGA
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Synonyms
Publications