jgi.p|Nanoce1779_2|583676, mRNA_2881 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583676
Unique NamemRNA_2881
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1768
Alignment locationscaffold_7:156957..158724 -

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Properties
Property NameValue
TranscriptId583762
TrackFilteredModels2
ProteinId583676
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:156957..158724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583676gene_2881Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583676mRNA_2881-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2881CDS_2881Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2881 ID=mRNA_2881|Name=jgi.p|Nanoce1779_2|583676|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp
CAGGGCCATTCTTGGTGCTTGCGTATGGCCTTCAGGGTAAGGGTTGGAGT
TCGTCGGTTGCTTTTGCCATGCCCGCCCTCTAAGCTCCGGGGCGCCCTTC
TTCCAGCGGTCAATTTTGTCAAAGCACATTCCATCTTTAGCCACCCATGT
CCCACATGCACAGGCCACCGGCACGTCAATAGTGCGCGTTCTCGGAAATC
TGCAGTGTGTGTGTGAGCGGCTGGCTCCAACCCCAACGCCCACTTCGAGC
ATCATCGCACGAGCGGCGGTGCAAGCGCTCTCATTCTCACCGCCCAGCCA
CCTCATTCCACCACAGGCCTTCAAACAGTCACGCAACCCGCCACGTACCA
AACGTCAGCCCTGGCGGCCTTTAGTAGAGGTGTGTGTGAGTGGACGAAGG
AGAGTGCTCCTCCTTCCTCCCGCCCACCTTAGCACCCTGGACGCGTCCGA
TCTCACCCGAGCAGCAGCAGGCGCAGCCGCAGGCGCAGCAGCACCGAGTG
CAGCAGCACCATCTCTGCAAGGAAGACTGAATCGCCAAGGCGTGCACGAA
TTCCCGCCTTCTCCCTTCGACTATACCTCTATAACCGCGACCTCCACGTC
AACCACGCATCAGGATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCAC
TCCAACTCCTTTCCCTACACCTCCACCACCGCCGTCCTGGCCGGCAAACC
CACCTTTATCGTGTGGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGC
GCGATAGCAATTTGGCGCAATACTTGCGTGTAGCCAAGCACTACAATGTG
ACGGCTTTGGTGCGTGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGA
GGCGGCAGGTATTCAGATGTATGACATGGCATATGATGATGGGTGCAGTC
CTCCTCCAGAGGTTATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTG
ATTAAGCCCTCTCGTCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAG
TGGATCCACTACTACCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCA
CCATTCCCGCCATTATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCA
TTGTGTGGCAGGACTGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGA
TTGAACATGGGTTCGGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCG
CAGCGACGAGGGGCGATTAACATGCGGCAATTGAATTATCTGGAGCAATA
CAAGAAGAGGGGGTCGGAGACGTGTGGGGGATGCTGTGTCATGTGAATTG
ACTCCAAGAGAGGGGGAGAAAGAAAGAGAGGAGGGGGGGAAAGGCGGCCT
TTTTTGAGAGGAAGGAAAGACGTTAGTTTTGATGCAGAGAGAGGAAAGAA
AACTCAGTGGGTTGTGGAGGGTGCTCTCTTTTGAGGTATGGCGAGCGCAT
ATATTGAGTCGATTAATCCATATCCATGAGTGGAGGTGTGGGTGTATGGT
GCTGCTGCTGCTGGTGCTGGTACGTACAAGATCAAGCATAAAGAGACAGT
ACACATAATCATGTATGAGAGGTGGAGATAGCTAATTTCGGTGCATTCTA
GTCTCACCTGAGGTTTCCAAATTGAATAGGAACAAGGGCAACGGAAAAAG
CAAGCATAGAGAGAGGGGAAGAAGTTTAAAAAAAGAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAG
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protein sequence of jgi.p|Nanoce1779_2|583676

>mRNA_2881-protein ID=mRNA_2881-protein|Name=jgi.p|Nanoce1779_2|583676|organism=Nannochloropsis oceanica|type=polypeptide|length=244bp
MAPPQTSSQSLHSNSFPYTSTTAVLAGKPTFIVWGKLRFLLMDAPRDSNL
AQYLRVAKHYNVTALVRVCEPTYNVAEVEAAGIQMYDMAYDDGCSPPPEV
IERWLALVDEVLIKPSRRSSLSYSNGNGSGSTTTSTPTSRDSSSATIPAI
MASPIESQQEQQQQQQQQQQLPPPAIAVHCVAGLGRAPVLVALALIEHGF
GDPSAVVEYIRSQRRGAINMRQLNYLEQYKKRGSETCGGCCVM*
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mRNA from alignment at scaffold_7:156957..158724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2881 ID=mRNA_2881|Name=jgi.p|Nanoce1779_2|583676|organism=Nannochloropsis oceanica|type=mRNA|length=1768bp|location=Sequence derived from alignment at scaffold_7:156957..158724- (Nannochloropsis oceanica)
CAGGGCCATTCTTGGTGCTTGCGTATGGCCTTCAGGGTAAGGGTTGGAGT
TCGTCGGTTGCTTTTGCCATGCCCGCCCTCTAAGCTCCGGGGCGCCCTTC
TTCCAGCGGTCAATTTTGTCAAAGCACATTCCATCTTTAGCCACCCATGT
CCCACATGCACAGGCCACCGGCACGTCAATAGTGCGCGTTCTCGGAAATC
TGCAGTGTGTGTGTGAGCGGCTGGCTCCAACCCCAACGCCCACTTCGAGC
ATCATCGCACGAGCGGCGGTGCAAGCGCTCTCATTCTCACCGCCCAGCCA
CCTCATTCCACCACAGGCCTTCAAACAGTCACGCAACCCGCCACGTACCA
AACGTCAGCCCTGGCGGCCTTTAGTAGAGGTGTGTGTGAGTGGACGAAGG
AGAGTGCTCCTCCTTCCTCCCGCCCACCTTAGCACCCTGGACGCGTCCGA
TCTCACCCGAGCAGCAGCAGGCGCAGCCGCAGGCGCAGCAGCACCGAGTG
CAGCAGCACCATCTCTGCAAGGAAGACTGAATCGCCAAGGCGTGCACGAA
TTCCCGCCTTCTCCCTTCGACTATACCTCTATAACCGCGACCTCCACGTC
AACCACGCATCAGGATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCAC
TCCAACTCCTTTCCCTACACCTCCACCACCGCCGTCCTGGCCGGCAAACC
CACCTTTATCGTGTGGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGC
GCGATAGCAATTTGGCGCAATACTTGCGTGTAGCCAAGCACTACAATGTG
ACGGCTTTGGTGCGTGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGA
GGCGGCAGGTATTCAGATGTATGACATGGCATATGATGATGGGTGCAGTC
CTCCTCCAGAGGTTATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTG
ATTAAGCCCTCTCGTCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAG
TGGATCCACTACTACCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCA
CCATTCCCGCCATTATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCA
TTGTGTGGCAGGACTGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGA
TTGAACATGGGTTCGGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCG
CAGCGACGAGGGGCGATTAACATGCGGCAATTGAATTATCTGGAGCAATA
CAAGAAGAGGGGGTCGGAGACGTGTGGGGGATGCTGTGTCATGTGAATTG
ACTCCAAGAGAGGGGGAGAAAGAAAGAGAGGAGGGGGGGAAAGGCGGCCT
TTTTTGAGAGGAAGGAAAGACGTTAGTTTTGATGCAGAGAGAGGAAAGAA
AACTCAGTGGGTTGTGGAGGGTGCTCTCTTTTGAGGTATGGCGAGCGCAT
ATATTGAGTCGATTAATCCATATCCATGAGTGGAGGTGTGGGTGTATGGT
GCTGCTGCTGCTGGTGCTGGTACGTACAAGATCAAGCATAAAGAGACAGT
ACACATAATCATGTATGAGAGGTGGAGATAGCTAATTTCGGTGCATTCTA
GTCTCACCTGAGGTTTCCAAATTGAATAGGAACAAGGGCAACGGAAAAAG
CAAGCATAGAGAGAGGGGAAGAAGTTTAAAAAAAGAGAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAG
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Coding sequence (CDS) from alignment at scaffold_7:156957..158724-

>mRNA_2881 ID=mRNA_2881|Name=jgi.p|Nanoce1779_2|583676|organism=Nannochloropsis oceanica|type=CDS|length=732bp|location=Sequence derived from alignment at scaffold_7:156957..158724- (Nannochloropsis oceanica)
ATGGCTCCTCCGCAGACATCCTCCCAATCCCTCCACTCCAACTCCTTTCC
CTACACCTCCACCACCGCCGTCCTGGCCGGCAAACCCACCTTTATCGTGT
GGGGGAAACTCCGATTTCTTCTCATGGATGCCCCGCGCGATAGCAATTTG
GCGCAATACTTGCGTGTAGCCAAGCACTACAATGTGACGGCTTTGGTGCG
TGTCTGCGAGCCGACATACAACGTAGCGGAGGTAGAGGCGGCAGGTATTC
AGATGTATGACATGGCATATGATGATGGGTGCAGTCCTCCTCCAGAGGTT
ATTGAGAGGTGGCTTGCTCTCGTAGACGAGGTGTTGATTAAGCCCTCTCG
TCGCTCCTCCCTCTCCTACTCCAATGGTAATGGTAGTGGATCCACTACTA
CCAGCACACCTACCTCCCGCGACTCCTCCTCTGCCACCATTCCCGCCATT
ATGGCCTCTCCCATTGAATCCCAGCAAGAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCTTCCTCCTCCCGCGATCGCCGTGCATTGTGTGGCAGGAC
TGGGCCGCGCGCCTGTCCTCGTCGCCCTGGCTTTGATTGAACATGGGTTC
GGCGACCCTTCGGCGGTGGTGGAATATATTCGGTCGCAGCGACGAGGGGC
GATTAACATGCGGCAATTGAATTATCTGGAGCAATACAAGAAGAGGGGGT
CGGAGACGTGTGGGGGATGCTGTGTCATGTGA
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Synonyms
Publications