jgi.p|Nanoce1779_2|583674, mRNA_2880 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583674
Unique NamemRNA_2880
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1206
Alignment locationscaffold_7:155641..156846 +

Link to JBrowse

Properties
Property NameValue
TranscriptId583760
TrackFilteredModels2
ProteinId583674
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:155641..156846 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583674gene_2880Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583674mRNA_2880-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2880CDS_2880Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2880 ID=mRNA_2880|Name=jgi.p|Nanoce1779_2|583674|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGTATCGGTG
ACACGACAGCGGCTTTTCTCCTTGCTTGTGAGCACGGGTGTGCTGTCTCG
TACATTCCACGTGGCGCAGTCACTCTCCAAGTGCTTGCTACAAGCTTTGG
CCTCCCTCCCTCCCTTCATCCCCCCCCCCTCCTCTTTCTCCTCCTCCACC
ACTTCTACGAGCAATACCCCCACCTCCGAGGCAGGGAATGAGGACGAGGA
AGCAAAGAAGATGAGGACTTTGGCTATTATCCCCATCCCTCTGATTAGAC
AAGTGTTGGAATTGAGGTCACGGGCGCTGCTGGCGTTGGGGGGACTGCTC
ACAGAGATGCCTTCATCGATGATTGAAACGGAGGGAGCGGCGGCGTGGAC
GGCCTTGCTGGAGATGGGGGAGGAAGGAATGGAGGAGGAGAGAAGGGGCC
ATGCTCCGTGGTACTGCCGAGGGGAGGAGCCATGCCTTGGGCTCCTGACT
GGTGTGATGTGTGCCTTTGTCAGGAGGAGGGGGCAGGGAGGGACGGAAGG
AGGACGGGCAGGCGGAAAAGAGGTTGAGTTGCTGGCACGGATGGTGAGGA
CGTCCCCCTATTTTGAGGTGAGGGTTAATGCGGCTGCGATTCTGGGTTGT
CTATGCCCTCCCTCTTCCTCGTTCTCCCTCGTGTCCTCGGTAGGAGCAAC
CTTAAAGGAGGCATTGCTGACCGAGACGCACGTGCTGGGAGAAGCAGCTG
TATTGAATGCGATCATGGACTTGTTTTCTGATGACGACCAAGAGAGGGAT
CGAATCTTCCAGAAACATCTAGGATTCTTGACGGTGTTGAAGGAGGTGCT
GCCTGCGTTTCGGTTGAAGTGTAAAGTGGAGGCGGGGAAGCACGGGAAAG
ATGCTGTTGGGCACGTGAAAGAGACGGCATTGAATACGGCCCGATTCATC
AAGTACAAGGAAAAGACGCTTTAGGATCCCCTTCTTCATTCAGCAACTAC
AAATCGAAAACTCATCAGGAGTCCTCCTCTCCTCCCGGTCCTCCTTTTGA
GTAAAGTGTGAACGTTTAATATCAAAGAATGTATCATACAAGATCCTCAC
AGTCACTCGACAGAGTAGAAATATTGTGGAGAAACGCTGGTGGAATGTAA
AGAAAGAAAATGTCGAAAGAAAATGAAGGCAACGCCAGCAGTAGCAGCAG
TAGCAC
back to top

protein sequence of jgi.p|Nanoce1779_2|583674

>mRNA_2880-protein ID=mRNA_2880-protein|Name=jgi.p|Nanoce1779_2|583674|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MRTLAIIPIPLIRQVLELRSRALLALGGLLTEMPSSMIETEGAAAWTALL
EMGEEGMEEERRGHAPWYCRGEEPCLGLLTGVMCAFVRRRGQGGTEGGRA
GGKEVELLARMVRTSPYFEVRVNAAAILGCLCPPSSSFSLVSSVGATLKE
ALLTETHVLGEAAVLNAIMDLFSDDDQERDRIFQKHLGFLTVLKEVLPAF
RLKCKVEAGKHGKDAVGHVKETALNTARFIKYKEKTL*
back to top

mRNA from alignment at scaffold_7:155641..156846+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2880 ID=mRNA_2880|Name=jgi.p|Nanoce1779_2|583674|organism=Nannochloropsis oceanica|type=mRNA|length=1206bp|location=Sequence derived from alignment at scaffold_7:155641..156846+ (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAGGAAGGTATCGGTG
ACACGACAGCGGCTTTTCTCCTTGCTTGTGAGCACGGGTGTGCTGTCTCG
TACATTCCACGTGGCGCAGTCACTCTCCAAGTGCTTGCTACAAGCTTTGG
CCTCCCTCCCTCCCTTCATCCCCCCCCCCTCCTCTTTCTCCTCCTCCACC
ACTTCTACGAGCAATACCCCCACCTCCGAGGCAGGGAATGAGGACGAGGA
AGCAAAGAAGATGAGGACTTTGGCTATTATCCCCATCCCTCTGATTAGAC
AAGTGTTGGAATTGAGGTCACGGGCGCTGCTGGCGTTGGGGGGACTGCTC
ACAGAGATGCCTTCATCGATGATTGAAACGGAGGGAGCGGCGGCGTGGAC
GGCCTTGCTGGAGATGGGGGAGGAAGGAATGGAGGAGGAGAGAAGGGGCC
ATGCTCCGTGGTACTGCCGAGGGGAGGAGCCATGCCTTGGGCTCCTGACT
GGTGTGATGTGTGCCTTTGTCAGGAGGAGGGGGCAGGGAGGGACGGAAGG
AGGACGGGCAGGCGGAAAAGAGGTTGAGTTGCTGGCACGGATGGTGAGGA
CGTCCCCCTATTTTGAGGTGAGGGTTAATGCGGCTGCGATTCTGGGTTGT
CTATGCCCTCCCTCTTCCTCGTTCTCCCTCGTGTCCTCGGTAGGAGCAAC
CTTAAAGGAGGCATTGCTGACCGAGACGCACGTGCTGGGAGAAGCAGCTG
TATTGAATGCGATCATGGACTTGTTTTCTGATGACGACCAAGAGAGGGAT
CGAATCTTCCAGAAACATCTAGGATTCTTGACGGTGTTGAAGGAGGTGCT
GCCTGCGTTTCGGTTGAAGTGTAAAGTGGAGGCGGGGAAGCACGGGAAAG
ATGCTGTTGGGCACGTGAAAGAGACGGCATTGAATACGGCCCGATTCATC
AAGTACAAGGAAAAGACGCTTTAGGATCCCCTTCTTCATTCAGCAACTAC
AAATCGAAAACTCATCAGGAGTCCTCCTCTCCTCCCGGTCCTCCTTTTGA
GTAAAGTGTGAACGTTTAATATCAAAGAATGTATCATACAAGATCCTCAC
AGTCACTCGACAGAGTAGAAATATTGTGGAGAAACGCTGGTGGAATGTAA
AGAAAGAAAATGTCGAAAGAAAATGAAGGCAACGCCAGCAGTAGCAGCAG
TAGCAC
back to top

Coding sequence (CDS) from alignment at scaffold_7:155641..156846+

>mRNA_2880 ID=mRNA_2880|Name=jgi.p|Nanoce1779_2|583674|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_7:155641..156846+ (Nannochloropsis oceanica)
ATGAGGACTTTGGCTATTATCCCCATCCCTCTGATTAGACAAGTGTTGGA
ATTGAGGTCACGGGCGCTGCTGGCGTTGGGGGGACTGCTCACAGAGATGC
CTTCATCGATGATTGAAACGGAGGGAGCGGCGGCGTGGACGGCCTTGCTG
GAGATGGGGGAGGAAGGAATGGAGGAGGAGAGAAGGGGCCATGCTCCGTG
GTACTGCCGAGGGGAGGAGCCATGCCTTGGGCTCCTGACTGGTGTGATGT
GTGCCTTTGTCAGGAGGAGGGGGCAGGGAGGGACGGAAGGAGGACGGGCA
GGCGGAAAAGAGGTTGAGTTGCTGGCACGGATGGTGAGGACGTCCCCCTA
TTTTGAGGTGAGGGTTAATGCGGCTGCGATTCTGGGTTGTCTATGCCCTC
CCTCTTCCTCGTTCTCCCTCGTGTCCTCGGTAGGAGCAACCTTAAAGGAG
GCATTGCTGACCGAGACGCACGTGCTGGGAGAAGCAGCTGTATTGAATGC
GATCATGGACTTGTTTTCTGATGACGACCAAGAGAGGGATCGAATCTTCC
AGAAACATCTAGGATTCTTGACGGTGTTGAAGGAGGTGCTGCCTGCGTTT
CGGTTGAAGTGTAAAGTGGAGGCGGGGAAGCACGGGAAAGATGCTGTTGG
GCACGTGAAAGAGACGGCATTGAATACGGCCCGATTCATCAAGTACAAGG
AAAAGACGCTTTAG
back to top
Synonyms
Publications