Properties
| Property Name | Value |
|---|
| TranscriptId | 583747 |
| Track | FilteredModels2 |
| ProteinId | 583661 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:150209..153154 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2878 ID=mRNA_2878|Name=jgi.p|Nanoce1779_2|583661|organism=Nannochloropsis oceanica|type=mRNA|length=1255bp
CAGGCTGGCCTCATGCCGCGTCCTGGCGGATTTCCTCCGCAACCGGGTGG
CCCGCCACCGGGGGGTCATGGGCACAAACCAGGAGAGCCCGTGCCGGATG
CAGTCTTTCATACGCAATTCCAGTGCTGCTCGGTGGAATTCAGTCCTTTC
CACGAAGGCCGCCTGGCAGTGGCCACGGCTCAATACTTTGGGATCATTGG
AAATGGCCGACAGTACATTTTGGAAATGGGCCCTGATGGCCACTTACGCG
AAAGCAGAAATTTCCTCACGCAAGAAGGGCTGTACGACTGCTCCTGGAGT
GAAGTGAATGAGAACCAGCTCGTTTCTGCCTCGGCAGACGGTAGCCTAAA
GCTGTGGGACACCATGACCTCTGATGACTACCCCATCGCGCATTGGCACG
AACACCAAGCCGAAGCCTCGTCGGTTGACTGGAACTTGGTCGGTAAAAAC
ACTTTTCTCTCGTCCTCGTGGGACGGCAGCATCAAGCATTGGGACCCCAC
CCGTCCTTCCTCCCTCGCTACCTACCTCGGCCACGACGGGTCTTGCGTGT
ATAACGCGGTCTGGTCTCCACGCCACGCGACTCGTTTCCTGTCCTGTGCT
GCGGATGGCAGCGTCCGTGTGTGGGATGCCTCCCTCCCTCCCTCCCTGCC
CCCGGCTATGGGCTTGGGGGGAGGAGGGATGGAGGGCGGAATGGTGCAGG
TGGTAAGGGCGCATGAGGGGGAAGTGCTGACGGCTGATTGGGACAAGTAT
AATGAGTGGGTCGTGTATTCGGGAGGGGTGGACAGGTCCGTCAAAATTTG
GGATTTGCGGCAACCCTCCCTCCCTCTCTCCTTCCTCCATGGGCACGGGT
TTGCGGTCCGTCGACTGAAGGCTAGTCCGCACCAGGGGGAGTTGATAGGC
TCGGTGTCGTACGATATGTCCTTTAGGCTGTGGGGGGCAGCGAGGGAGGG
GGGGAGGGTGGGGGAGGTGTGGCGGTGTGAGTACCACACGGAGTTTGTGC
AAGGGCTGGACTTTGATTTGTTTATGCCTGGGAGAATCGCAACATGCTCC
TGGGACCGGCGGGTGTGCGTGTGGAGGATGCCATTTTTGTAGAGAAGAGA
GGGATGTGAAGGGGGAGAAGGTCCTTTGTAAAGGGAAGAAAGGAATGAGT
GGGTGGAAGGGGGAATGGATGGGAGGAGGGTGTTTTGTATAAGGAGGGAG
GAAAGGAAGGAAGGAAGGAAGGAAGGAATGAAGGAAGGGGGAGGGAGGGA
AGGGG back to topprotein sequence of jgi.p|Nanoce1779_2|583661 >mRNA_2878-protein ID=mRNA_2878-protein|Name=jgi.p|Nanoce1779_2|583661|organism=Nannochloropsis oceanica|type=polypeptide|length=360bp
MPRPGGFPPQPGGPPPGGHGHKPGEPVPDAVFHTQFQCCSVEFSPFHEGR
LAVATAQYFGIIGNGRQYILEMGPDGHLRESRNFLTQEGLYDCSWSEVNE
NQLVSASADGSLKLWDTMTSDDYPIAHWHEHQAEASSVDWNLVGKNTFLS
SSWDGSIKHWDPTRPSSLATYLGHDGSCVYNAVWSPRHATRFLSCAADGS
VRVWDASLPPSLPPAMGLGGGGMEGGMVQVVRAHEGEVLTADWDKYNEWV
VYSGGVDRSVKIWDLRQPSLPLSFLHGHGFAVRRLKASPHQGELIGSVSY
DMSFRLWGAAREGGRVGEVWRCEYHTEFVQGLDFDLFMPGRIATCSWDRR
VCVWRMPFL* back to topmRNA from alignment at scaffold_7:150209..153154- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2878 ID=mRNA_2878|Name=jgi.p|Nanoce1779_2|583661|organism=Nannochloropsis oceanica|type=mRNA|length=2946bp|location=Sequence derived from alignment at scaffold_7:150209..153154- (Nannochloropsis oceanica)
CAGGCTGGCCTCATGCCGCGTCCTGGCGGATTTCCTCCGCAACCGGGTGG
CCCGCCACCGGGGGGTCATGGGCACAAACCAGGAGAGCCCGTGCCGGATG
CAGTCTTTCATACGCAATTCCAGTGCTGCTCGGTACGTAGTCGTACATGT
ACCTCTTTGTTTGTATGCTCTGCTGTCCGTCAACGCCATGAGCCGTCGTG
TATTTGTGTGCGTCTGTGCTTCTAATCACAGTAATCCTCATCGAATTGGA
ATGCACTCACCCACTTCCTCCCTCTTTCCCTCCCCACCCTGTCGCTTCAG
GTGGAATTCAGTCCTTTCCACGAAGGCCGCCTGGCAGTGGCCACGGCTCA
ATACTTTGGGATCATTGGAAATGGCCGACAGTACATTTTGGAAGTAAGTC
TTTGAACGTCATTCAGTCGTGGAAAGTGCTGAATGAGAGAGGAATAATCA
AGACTCCCTCCCTCCCTCTCCTCCCCTCTGGCAACGAAGAGAATGCAATA
TGCTTTCAATGCTTTGAAGCTTTGTTTTCTTACTAATAAAGAGCCGAGCG
AATCCTTCACTCTGTGAATGAGACAAATCGGAATTTAATCGTATCTACCT
TCCTTCATCCTTCCCCTCCTAGATGGGCCCTGATGGCCACTTACGCGAAA
GCAGAAATTTCCTCACGCAAGAAGGGCTGTACGACTGCTCCTGGAGTGAA
GTGAATGAGAACCAGCTCGTTTCTGCCTCGGCAGACGGTAGCCTAAAGCT
GTGGGACACCATGACCTCTGATGACTACCCCATCGCGCATTGGTATGTGC
CCTTCCTCCTCCTCTCTCTCTCCCTCCTTTTCTCTTCGTAGTGGTCGCAC
GCTCCTCCTCTGTATCTTCTGAGAGTTCTAAGCGGAAAGGCAAGCGACGC
TCCTACTTCTTTCCGCTTCTTTTCGTAACCGCCTACAGAATATTCCCTCT
CCATTCTCTTCCCCTCCCTCAAAAGGCACGAACACCAAGCCGAAGCCTCG
TCGGTTGACTGGAACTTGGTCGGTAAAAACACTTTTCTCTCGTCCTCGTG
GGACGGCAGCATCAAGCATTGGGACCCCACCCGTCCTTCCTCCCTCGCTA
CCTACCTCGGCCACGACGGGTCTTGCGTGTATAACGCGGTCTGGTCTCCA
CGCCACGCGACTCGTTTCCTGTCCTGTGCTGCGGATGGCAGCGTCCGTGT
GTGGGATGCCTCCCTCCCTCCCTCCCTGCCCCCGGCTATGGGCTTGGGGG
GAGGAGGGATGGAGGGCGGAATGGTGCAGGTGGTAAGGGCGCATGAGGGG
GAAGTGCTGACGGCTGATTGGGACAAGTATAATGAGTGGGTCGTGTATTC
GGGAGGGGTGGACAGGTCCGTCAAAATTTGGGATTTGCGGCAACCCTCCC
TCCCTCTCTCCTTCCTCCATGGGCACGGGTTTGCGGTCCGTCGACTGAAG
GCTAGTCCGCACCAGGGGGAGTTGATAGGCTCGGTGTCGTACGATATGTC
CTTTAGGCTGTGGGGGGCAGCGAGGGAGGGGGGGAGGGTGGGGGAGGTGT
GGCGGTGTGAGTACCACACGGAGTTTGTGCAAGGGCTGGACTTTGATTTG
TTTATGCCTGGGAGAATCGCAACATGCTCCTGGGACCGGCGGGTGTGCGT
GTGGAGGATGCCATTTTTGTAGAGAAGAGAGGGATGTGAAGGGGGAGAAG
GTCCTTTGTAAAGGGAAGAAAGGAATGAGTGGGTGGAAGGGGGAATGGAT
GGGAGGAGGGTGTTTTGTATAAGGAGGGAGGAAAGGAAGGAAGGAAGGAA
GGAAGGAATGAAGGAAGGAAGGAAAGAGAAAGAGAATATGCATAGAATGA
TTACACATGTGCAGGAAAGCAATTGGCTCGCACATCTGACAAAACAATTG
AGAAAATGTTGGTGGTAAAGGAAAAGCACGACACGTAGTAGCATATGGAG
TAAAGTGCACATAACACACCCGCAAGTTAAATCCTCCAATTCACTTGAGA
AAGAAAACAAAGATGCAACATGAATTTTTCGTTTGTTTTACTCCATTCGT
TATCTGATTTATCTCTTTCGCCTTGAACGGCGTTTGTAGTCATGGCTCGC
TCCACGCTCCAATTTTCCTGTCAAGCACCCCACTATCCTTCTCTCTTTTG
TAGATACAGACATTCCAACCTCCATCTTTCCCCCCCTTCCTCGCTCCCTT
CTCATCAGTTAGGAGATGCTGCCCTTCATCCCACTCGTCACTCCTCATCA
GTTAGGAGATGCTGCCCTTCATCCCACTCGTCCCTTCTCATCAGTTAGGA
GATGCTGCCCTTCATCCCACTCGTCCCTTCTCATCGGTTAGGAGATGCTG
CCCTTCATCCCACTCTTCACCGGTCCCTTGCTCGTCATAAAGGGAATGCC
CTTGTAAGTGGCAACCATGTCCTAGGAAGGAAGGAGGGAGGAAGAGAGGG
AGAGAGGGCGGGTGAGAATAGAAAAGAAGAATGGAAAGCTCATCACCAAT
AAGACGGTAAGAGTCAACCATACCCTAGGGCAGCGAGGGAGGTAGATCGA
TTAAAGCGAGACGAAGAATGAAACTATCTGAAAAAGGCAATTTACATTTA
TACATGAGAAGCCCAGACAATTTTTTTAAAAATCAAATCAAAAGAAACGG
AAGACGCACCTCCCCCGCAGAAAGATCGTCCGCTACGCGATCAAAGGCCT
TTCCCGCTCTATTTCCTGGGGGCTCTGGTGCCGCCACGTGGCCTTCGAAG
GTAATCAGCTCCCCCACTGCCACGCCAGCAGGGGGCGAGAGAGGCATGAC
GACGGTGTGATCTTCGTTGCTAGCGCACAGCAGCATGCCGTGGGATGTGA
TGCCTGGGAAGGAGGAACGAGCGAGGAAGGGAGGGAGGGAGGGAACAAAG
AGGGTTAATGCCCAGAGGGCCGGAAGGTGGGGAGGGAGGGAAGGGG back to topCoding sequence (CDS) from alignment at scaffold_7:150209..153154- >mRNA_2878 ID=mRNA_2878|Name=jgi.p|Nanoce1779_2|583661|organism=Nannochloropsis oceanica|type=CDS|length=4320bp|location=Sequence derived from alignment at scaffold_7:150209..153154- (Nannochloropsis oceanica)
GCACGAACACCAAGCCGAAGCCTCGTCGGTTGACTGGAACTTGGTCGGTA
AAAACACTTTTCTCTCGTCCTCGTGGGACGGCAGCATCAAGCATTGGGAC
CCCACCCGTCCTTCCTCCCTCGCTACCTACCTCGGCCACGACGGGTCTTG
CGTGTATAACGCGGTCTGGTCTCCACGCCACGCGACTCGTTTCCTGTCCT
GTGCTGCGGATGGCAGCGTCCGTGTGTGGGATGCCTCCCTCCCTCCCTCC
CTGCCCCCGGCTATGGGCTTGGGGGGAGGAGGGATGGAGGGCGGAATGGT
GCAGGTGGTAAGGGCGCATGAGGGGGAAGTGCTGACGGCTGATTGGGACA
AGTATAATGAGTGGGTCGTGTATTCGGGAGGGGTGGACAGGTCCGTCAAA
ATTTGGGATTTGCGGCAACCCTCCCTCCCTCTCTCCTTCCTCCATGGGCA
CGGGTTTGCGGTCCGTCGACTGAAGGCTAGTCCGCACCAGGGGGAGTTGA
TAGGCTCGGTGTCGTACGATATGTCCTTTAGGCTGTGGGGGGCAGCGAGG
GAGGGGGGGAGGGTGGGGGAGGTGTGGCGGTGTGAGTACCACACGGAGTT
TGTGCAAGGGCTGGACTTTGATTTGTTTATGCCTGGGAGAATCGCAACAT
GCTCCTGGGACCGGCGGGTGTGCGTGTGGAGGATGCCATTTTTGTAGATG
GGCCCTGATGGCCACTTACGCGAAAGCAGAAATTTCCTCACGCAAGAAGG
GCTGTACGACTGCTCCTGGAGTGAAGTGAATGAGAACCAGCTCGTTTCTG
CCTCGGCAGACGGTAGCCTAAAGCTGTGGGACACCATGACCTCTGATGAC
TACCCCATCGCGCATTGGTGGAATTCAGTCCTTTCCACGAAGGCCGCCTG
GCAGTGGCCACGGCTCAATACTTTGGGATCATTGGAAATGGCCGACAGTA
CATTTTGGAAATGCCGCGTCCTGGCGGATTTCCTCCGCAACCGGGTGGCC
CGCCACCGGGGGGTCATGGGCACAAACCAGGAGAGCCCGTGCCGGATGCA
GTCTTTCATACGCAATTCCAGTGCTGCTCGGCACGAACACCAAGCCGAAG
CCTCGTCGGTTGACTGGAACTTGGTCGGTAAAAACACTTTTCTCTCGTCC
TCGTGGGACGGCAGCATCAAGCATTGGGACCCCACCCGTCCTTCCTCCCT
CGCTACCTACCTCGGCCACGACGGGTCTTGCGTGTATAACGCGGTCTGGT
CTCCACGCCACGCGACTCGTTTCCTGTCCTGTGCTGCGGATGGCAGCGTC
CGTGTGTGGGATGCCTCCCTCCCTCCCTCCCTGCCCCCGGCTATGGGCTT
GGGGGGAGGAGGGATGGAGGGCGGAATGGTGCAGGTGGTAAGGGCGCATG
AGGGGGAAGTGCTGACGGCTGATTGGGACAAGTATAATGAGTGGGTCGTG
TATTCGGGAGGGGTGGACAGGTCCGTCAAAATTTGGGATTTGCGGCAACC
CTCCCTCCCTCTCTCCTTCCTCCATGGGCACGGGTTTGCGGTCCGTCGAC
TGAAGGCTAGTCCGCACCAGGGGGAGTTGATAGGCTCGGTGTCGTACGAT
ATGTCCTTTAGGCTGTGGGGGGCAGCGAGGGAGGGGGGGAGGGTGGGGGA
GGTGTGGCGGTGTGAGTACCACACGGAGTTTGTGCAAGGGCTGGACTTTG
ATTTGTTTATGCCTGGGAGAATCGCAACATGCTCCTGGGACCGGCGGGTG
TGCGTGTGGAGGATGCCATTTTTGTAGATGGGCCCTGATGGCCACTTACG
CGAAAGCAGAAATTTCCTCACGCAAGAAGGGCTGTACGACTGCTCCTGGA
GTGAAGTGAATGAGAACCAGCTCGTTTCTGCCTCGGCAGACGGTAGCCTA
AAGCTGTGGGACACCATGACCTCTGATGACTACCCCATCGCGCATTGGTG
GAATTCAGTCCTTTCCACGAAGGCCGCCTGGCAGTGGCCACGGCTCAATA
CTTTGGGATCATTGGAAATGGCCGACAGTACATTTTGGAAATGCCGCGTC
CTGGCGGATTTCCTCCGCAACCGGGTGGCCCGCCACCGGGGGGTCATGGG
CACAAACCAGGAGAGCCCGTGCCGGATGCAGTCTTTCATACGCAATTCCA
GTGCTGCTCGGCACGAACACCAAGCCGAAGCCTCGTCGGTTGACTGGAAC
TTGGTCGGTAAAAACACTTTTCTCTCGTCCTCGTGGGACGGCAGCATCAA
GCATTGGGACCCCACCCGTCCTTCCTCCCTCGCTACCTACCTCGGCCACG
ACGGGTCTTGCGTGTATAACGCGGTCTGGTCTCCACGCCACGCGACTCGT
TTCCTGTCCTGTGCTGCGGATGGCAGCGTCCGTGTGTGGGATGCCTCCCT
CCCTCCCTCCCTGCCCCCGGCTATGGGCTTGGGGGGAGGAGGGATGGAGG
GCGGAATGGTGCAGGTGGTAAGGGCGCATGAGGGGGAAGTGCTGACGGCT
GATTGGGACAAGTATAATGAGTGGGTCGTGTATTCGGGAGGGGTGGACAG
GTCCGTCAAAATTTGGGATTTGCGGCAACCCTCCCTCCCTCTCTCCTTCC
TCCATGGGCACGGGTTTGCGGTCCGTCGACTGAAGGCTAGTCCGCACCAG
GGGGAGTTGATAGGCTCGGTGTCGTACGATATGTCCTTTAGGCTGTGGGG
GGCAGCGAGGGAGGGGGGGAGGGTGGGGGAGGTGTGGCGGTGTGAGTACC
ACACGGAGTTTGTGCAAGGGCTGGACTTTGATTTGTTTATGCCTGGGAGA
ATCGCAACATGCTCCTGGGACCGGCGGGTGTGCGTGTGGAGGATGCCATT
TTTGTAGATGGGCCCTGATGGCCACTTACGCGAAAGCAGAAATTTCCTCA
CGCAAGAAGGGCTGTACGACTGCTCCTGGAGTGAAGTGAATGAGAACCAG
CTCGTTTCTGCCTCGGCAGACGGTAGCCTAAAGCTGTGGGACACCATGAC
CTCTGATGACTACCCCATCGCGCATTGGTGGAATTCAGTCCTTTCCACGA
AGGCCGCCTGGCAGTGGCCACGGCTCAATACTTTGGGATCATTGGAAATG
GCCGACAGTACATTTTGGAAATGCCGCGTCCTGGCGGATTTCCTCCGCAA
CCGGGTGGCCCGCCACCGGGGGGTCATGGGCACAAACCAGGAGAGCCCGT
GCCGGATGCAGTCTTTCATACGCAATTCCAGTGCTGCTCGGCACGAACAC
CAAGCCGAAGCCTCGTCGGTTGACTGGAACTTGGTCGGTAAAAACACTTT
TCTCTCGTCCTCGTGGGACGGCAGCATCAAGCATTGGGACCCCACCCGTC
CTTCCTCCCTCGCTACCTACCTCGGCCACGACGGGTCTTGCGTGTATAAC
GCGGTCTGGTCTCCACGCCACGCGACTCGTTTCCTGTCCTGTGCTGCGGA
TGGCAGCGTCCGTGTGTGGGATGCCTCCCTCCCTCCCTCCCTGCCCCCGG
CTATGGGCTTGGGGGGAGGAGGGATGGAGGGCGGAATGGTGCAGGTGGTA
AGGGCGCATGAGGGGGAAGTGCTGACGGCTGATTGGGACAAGTATAATGA
GTGGGTCGTGTATTCGGGAGGGGTGGACAGGTCCGTCAAAATTTGGGATT
TGCGGCAACCCTCCCTCCCTCTCTCCTTCCTCCATGGGCACGGGTTTGCG
GTCCGTCGACTGAAGGCTAGTCCGCACCAGGGGGAGTTGATAGGCTCGGT
GTCGTACGATATGTCCTTTAGGCTGTGGGGGGCAGCGAGGGAGGGGGGGA
GGGTGGGGGAGGTGTGGCGGTGTGAGTACCACACGGAGTTTGTGCAAGGG
CTGGACTTTGATTTGTTTATGCCTGGGAGAATCGCAACATGCTCCTGGGA
CCGGCGGGTGTGCGTGTGGAGGATGCCATTTTTGTAGATGGGCCCTGATG
GCCACTTACGCGAAAGCAGAAATTTCCTCACGCAAGAAGGGCTGTACGAC
TGCTCCTGGAGTGAAGTGAATGAGAACCAGCTCGTTTCTGCCTCGGCAGA
CGGTAGCCTAAAGCTGTGGGACACCATGACCTCTGATGACTACCCCATCG
CGCATTGGTGGAATTCAGTCCTTTCCACGAAGGCCGCCTGGCAGTGGCCA
CGGCTCAATACTTTGGGATCATTGGAAATGGCCGACAGTACATTTTGGAA
ATGCCGCGTCCTGGCGGATTTCCTCCGCAACCGGGTGGCCCGCCACCGGG
GGGTCATGGGCACAAACCAGGAGAGCCCGTGCCGGATGCAGTCTTTCATA
CGCAATTCCAGTGCTGCTCG back to top
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