jgi.p|Nanoce1779_2|583656, mRNA_2877 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583656
Unique Name	mRNA_2877
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1135
Alignment location	scaffold_7:148454..150898 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583742
Track	FilteredModels2
ProteinId	583656

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:148454..150898 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583656	gene_2877	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583656	mRNA_2877-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2877	CDS_2877	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:148454..150898+
coding sequence from alignment at scaffold_7:148454..150898+

mRNA sequence

>mRNA_2877 ID=mRNA_2877|Name=jgi.p|Nanoce1779_2|583656|organism=Nannochloropsis oceanica|type=mRNA|length=1135bp
AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG
CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGACT
GCCCATGGCTTCTCCCGCTCAAGCAGCAGGGGAAGGGCCAAGAACGGTGG
GATTGTGCGCGTACCGTTCTTGAATCAAGGTCTGGCCAAGGCGGCGCACA
CTAGGTTGTTCAGCACCACGGAGGACGCTAATCCTGCTCCGGCTGCTGCA
GCCGCGGCGGACGATGCTGAGCTGCAAACCCTCTGGCTCGATGACAGGAA
GACAGCATTACGCCTGTCGTGGCCCCCCTCCTCCATCCCTGCCTCGTCGT
TCTCGTACCGCGTCAGCTACACGCGCGATGGGATACCAAATCAAGTGACT
GCAGGAGGGGGTTCGGAAGATGTAGTGTTGCGAGGGCTGGAGGGAGGGAG
CGTTTATGAAGTAGCGGTAGTGCGGGTGGAAGGAGAGTCATTGAAGGAGA
CGATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAGGCCCCC
AAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGGCAAGAT
CGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGGAGAAGA
TTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGCCTGGTG
AAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGTCCTGGC
CAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCATGCTGC
TGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCGCCCCCT
GCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGTGGCGGC
ACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCGTAGCGG
ACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGCATTCCC
TTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAGCATCTC
CTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCATCTCCTAACTG
ATGAGAAGGGACGAGTGGGATGAAGGGCAGCATCT

protein sequence of jgi.p|Nanoce1779_2|583656

>mRNA_2877-protein ID=mRNA_2877-protein|Name=jgi.p|Nanoce1779_2|583656|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
MVGKTKVETAKAPEAPKGELTELSRLEIRTGKIVEVSRHPEADGLYVEKI
DLGEPSGARTIVSGLVKYQTEEQLLGREVVVLANLKPRALKGITSHGMLL
CASNEDHTVVMPLSPPAGVAVGELITFEGHVAAPEPPGNRAGKAFDRVAD
DLSAGEDMVATYKGIPFMTSKGPVKSGMKGSIS*

mRNA from alignment at scaffold_7:148454..150898+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2877 ID=mRNA_2877|Name=jgi.p|Nanoce1779_2|583656|organism=Nannochloropsis oceanica|type=mRNA|length=2445bp|location=Sequence derived from alignment at scaffold_7:148454..150898+ (Nannochloropsis oceanica)
AACAGGGCGACGGCAACGAAGAAGACAAAGAGAAGCTTGAGATGAAGTGG
CTGGTGTTGGCGTGCGTCGTAATCATGTTGCTGCGTAGTGTTTCGGGTAA
GTGCAATTCGTGTGCTGCTTGTGATGATCAGGATCGAGGAAGGGATGACT
CATTGCCGTATTATGCGCCGCTGCCGCTACCACTGATTCTGCAGCCGCGG
TTGCAGAGTTTGTCTGTTACCATACTACGAAGAGGTCGACTTGTTCACAC
TCCTCTGCGTTGTTATCTCGTCCTCTGACGAGCATCGTCATGATGACTCG
ATCGATCATTCCACTAAGTGCAAATCACCCCCTTTCCCTAATTCCATCCT
GTCCTTTCCTGTCAAGGCTTTACCACGCGGACACTCACGCCCAGCACTCG
CAAAATGACTCCCATGGCCTCCAGGACTGCCCATGGCTTCTCCCGCTCAA
GCAGCAGGGGAAGGGCCAAGAACGGTGGGATTGTGCGCGTACCGTTCTTG
AATCAAGGTCTGGCCAAGGCGGCGCACACTAGGTTGTTCAGCACCACGGA
GGACGCTAATCCTGCTCCGGCTGCTGCAGCCGCGGCGGACGATGCTGAGG
TAGGTTGATGAGAGGGAGGGAAGTGTGTGTATGCCTCTGTTTGTATATAT
ATATATATATATATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAT
GTACGAGGGTGTATGGTACGTTCTTTTTCGCCTGTGGTAGTTCCATATTC
GGTCGCTCCTATCGTACGTCCTCCAATAAAGCCCGCTCCTCCTCCTCCTT
CTCCTCCTCCTTCTCCTCCTCCTTCTCCTCCTCTTCCCGCCTATAGCTGC
AAACCCTCTGGCTCGATGACAGGAAGACAGCATTACGCCTGTCGTGGCCC
CCCTCCTCCATCCCTGCCTCGTCGTTCTCGTACCGCGTCAGCTACACGCG
CGATGGGATACCAAATCAAGTGACTGCAGGAGGGGGTTCGGAAGATGTAG
TGTTGCGAGGGCTGGAGGGAGGGAGCGTTTATGAAGTAGCGGTAGTGCGG
GTGGAAGGAGAGTCATTGAAGGAGACGATGGTGGGAAAGACCAAGGTGGA
GACGGCTAAGGTACATAGATTGATTGCCTGCATGCCAGGGAGTATTAAGA
GCGAGGAGAGGAAGATGCGGGAGTCAATGTGGGCAAAATGCTCTCGCTTC
TGGTTGCCTTTTGTATGTCTCTCTCATTATGTATTTATGGCTTTGGATAC
ATCCCTGTTTATTTTCTGTCATCCGTTTTTCATGCCTTTCGGAAGCTCGC
GAAGTGTGACTCGATGAATATCACTAAGCCACCAATCATCCACTCTTTGG
AACCCCTCCAACAGGCACCTGAGGCCCCCAAAGGGGAATTAACCGAGCTC
TCTCGCCTCGAGATCCGCACGGGCAAGATCGTGGAGGTTAGCCGACACCC
CGAAGCGGATGGTTTGTACGTGGAGAAGATTGATCTGGGGTGAGTTTATT
TGGTCATTGATTTTAAGCACTTTGTAATTTTAATGTTTTGATGCTGGCGT
TATCATAAGTTGGTGGATTTGTCACGATTAACACAGCCCTCCCTCCCTCC
CTCCCAACCTCCTCCCCCCCCCCCCCCAGAGAACCCTCCGGAGCCCGCAC
CATTGTCTCCGGCCTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGAC
GGGAGGTCGTCGTCCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGTACG
TGTCACCCCTTCCCTCCCTCCCCACCTTCCGGCCCTCTGGGCATTAACCC
TCTTTGTTCCCTCCCTCCCTCCCTTCCTCGCTCGTTCCTCCTTCCCAGGC
ATCACATCCCACGGCATGCTGCTGTGCGCTAGCAACGAAGATCACACCGT
CGTCATGCCTCTCTCGCCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTA
CCTTCGAAGGCCACGTGGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGA
AAGGCCTTTGATCGCGTAGCGGACGATCTTTCTGCGGGGGAGGTGCGTCT
TCCGTTTCTTTTGATTTGATTTTTAAAAAAATTGTCTGGGCTTCTCATGT
ATAAATGTAAATTGCCTTTTTCAGATAGTTTCATTCTTCGTCTCGCTTTA
ATCGATCTACCTCCCTCGCTGCCCTAGGGTATGGTTGACTCTTACCGTCT
TATTGGTGATGAGCTTTCCATTCTTCTTTTCTATTCTCACCCGCCCTCTC
TCCCTCTCTTCCTCCCTCCTTCCTTCCTAGGACATGGTTGCCACTTACAA
GGGCATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGG
GCAGCATCTCCTAACCGATGAGAAGGGACGAGTGGGATGAAGGGCAGCAT
CTCCTAACTGATGAGAAGGGACGAGTGGGATGAAGGGCAGCATCT

Coding sequence (CDS) from alignment at scaffold_7:148454..150898+

>mRNA_2877 ID=mRNA_2877|Name=jgi.p|Nanoce1779_2|583656|organism=Nannochloropsis oceanica|type=CDS|length=2760bp|location=Sequence derived from alignment at scaffold_7:148454..150898+ (Nannochloropsis oceanica)
ATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAGGCCCCCAA
AGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGGCAAGATCG
TGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGGAGAAGATT
GATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGCCTGGTGAA
ATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGTCCTGGCCA
ACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCATGCTGCTG
TGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCGCCCCCTGC
TGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGTGGCGGCAC
CAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCGTAGCGGAC
GATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGCATTCCCTT
TATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAGCATCTCCT
AAATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAGGCCCCC
AAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGGCAAGAT
CGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGGAGAAGA
TTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGCCTGGTG
AAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGTCCTGGC
CAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCATGCTGC
TGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCGCCCCCT
GCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGTGGCGGC
ACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCGTAGCGG
ACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGCATTCCC
TTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAGCATCTC
CTAAATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAGGCCC
CCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGGCAAG
ATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGGAGAA
GATTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGCCTGG
TGAAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGTCCTG
GCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCATGCT
GCTGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCGCCCC
CTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGTGGCG
GCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCGTAGC
GGACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGCATTC
CCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAGCATC
TCCTAAATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAGGC
CCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGGCA
AGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGGAG
AAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGCCT
GGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGTCC
TGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCATG
CTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCGCC
CCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGTGG
CGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCGTA
GCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGCAT
TCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAGCA
TCTCCTAAATGGTGGGAAAGACCAAGGTGGAGACGGCTAAGGCACCTGAG
GCCCCCAAAGGGGAATTAACCGAGCTCTCTCGCCTCGAGATCCGCACGGG
CAAGATCGTGGAGGTTAGCCGACACCCCGAAGCGGATGGTTTGTACGTGG
AGAAGATTGATCTGGGAGAACCCTCCGGAGCCCGCACCATTGTCTCCGGC
CTGGTGAAATATCAAACAGAAGAGCAATTGCTCGGACGGGAGGTCGTCGT
CCTGGCCAACCTCAAGCCCCGTGCTCTGAAAGGCATCACATCCCACGGCA
TGCTGCTGTGCGCTAGCAACGAAGATCACACCGTCGTCATGCCTCTCTCG
CCCCCTGCTGGCGTGGCAGTGGGGGAGCTGATTACCTTCGAAGGCCACGT
GGCGGCACCAGAGCCCCCAGGAAATAGAGCGGGAAAGGCCTTTGATCGCG
TAGCGGACGATCTTTCTGCGGGGGAGGACATGGTTGCCACTTACAAGGGC
ATTCCCTTTATGACGAGCAAGGGACCGGTGAAGAGTGGGATGAAGGGCAG
CATCTCCTAA

Synonyms

Publications