jgi.p|Nanoce1779_2|583644, mRNA_2874 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583644
Unique Name	mRNA_2874
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1471
Alignment location	scaffold_7:141768..143440 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583730
Track	FilteredModels2
ProteinId	583644

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:141768..143440 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583644	gene_2874	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583644	mRNA_2874-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2874	CDS_2874	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:141768..143440+
coding sequence from alignment at scaffold_7:141768..143440+

mRNA sequence

>mRNA_2874 ID=mRNA_2874|Name=jgi.p|Nanoce1779_2|583644|organism=Nannochloropsis oceanica|type=mRNA|length=1471bp
CAGACACAGGCGGTTAGCCATCTTCTGCTCCCCGCCGGCATATCACACCA
GCGCAGGGCAGCACTCAAAGCAAGCAAGCATGATGCGTAGCATGGCACAC
TCTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAG
GAGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGG
GCCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTACCCCACCACCCTC
TCCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACG
GGGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGG
CAAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCT
GAGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCC
TTGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCA
AATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTAC
ATGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAAT
TCTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCT
TTGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGAT
GAGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTC
TGAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGC
GTTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCAT
CCAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCAC
GCCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGA
TTGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGA
GGACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGT
GAGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGT
GCAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAA
GGACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGA
CTTTGATAATCGCGCGCAGTTGAGCCAAGAATGGCGGTTGGTGGACATCG
ACGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATGGA
GAGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAAGA
TGACTGAGTCCTATCGGAAGAAGAGAAGATTATTAGAGCGGAGGGATTGT
ACATTGAGGACCGAGGGTGAGAGAGAAATAGAGCGCCAAAGAAAAACCAA
GAGGGCAAAAATGTTGCAGAC

protein sequence of jgi.p|Nanoce1779_2|583644

>mRNA_2874-protein ID=mRNA_2874-protein|Name=jgi.p|Nanoce1779_2|583644|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MMRSMAHSARRGPLVNMGLRGIRRSGSCSDKSNCAISQALGRSAAPSSPP
SLYPTTLSAAWKQHQHLLLYNSRRGMSSDSAPPSSFANPRASTSSPQEGV
APGSVAAEEEEKEKPPPFQDVAFPWRTAPRMHLSFLQAASKWLSDVFPQA
FIRGLFYMSVGKLMEAPAEDLREILFRSTRFAFIQAVRGIFEGQCKTPPP
AWEYTNDELNPPSSEWELGYPPLSEMMEPKLLEMYQDVVARFRANNREVR
LELESIHPISMHDFKLVIGPPRGTPLPPGATKHTRGGVTVIVPQMPEGGE
EMEGRGGGQEMGMGNNGQSFMAAVRGSKNHMIFQMAVTFKCRELFCVKDV
ETDEAVQGQEEMRETEHVCRFEIDFDNRAQLSQEWRLVDIDDWMNGNVYL
TGMPDDGEMSTERSGEGAHGRRKDD*

mRNA from alignment at scaffold_7:141768..143440+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2874 ID=mRNA_2874|Name=jgi.p|Nanoce1779_2|583644|organism=Nannochloropsis oceanica|type=mRNA|length=1673bp|location=Sequence derived from alignment at scaffold_7:141768..143440+ (Nannochloropsis oceanica)
CAGACACAGGCGGTTAGCCATCTTCTGCTCCCCGCCGGCATATCACACCA
GCGCAGGGCAGCACTCAAAGCAAGCAAGCATGATGCGTAGCATGGCACAC
TCTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAG
GAGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGG
GCCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTACCCCACCACCCTC
TCCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACG
GGGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGG
CAAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCT
GAGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCC
TTGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCA
AATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTAC
ATGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAAT
TCTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCT
TTGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGAT
GAGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTC
TGAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGC
GTTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCAT
CCAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCAC
GCCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGA
TTGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGA
GGACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGT
GAGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGT
GCAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAA
GGACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGA
CTTTGATAATCGCGCGCAGGTAAGGCATTTGGAGGGGAGGATGCAGAGAT
CTACGCCGTAACAGGGAGGGAGAGAGAGGGAATGAAACGGAAGCGGTAGG
GATAGATGGAATACTGTTTGGGAAGTTCCTGGTTGAAGTGTGATTCTTTC
TATGCACACGAATCTCACGATTTCCCCCTAATTTTGAAATCATATGCACA
TACACTTCGAACAACTCACAGTTGAGCCAAGAATGGCGGTTGGTGGACAT
CGACGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATG
GAGAGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAA
GATGACTGAGTCCTATCGGAAGAAGAGAAGATTATTAGAGCGGAGGGATT
GTACATTGAGGACCGAGGGTGAGAGAGAAATAGAGCGCCAAAGAAAAACC
AAGAGGGCAAAAATGTTGCAGAC

Coding sequence (CDS) from alignment at scaffold_7:141768..143440+

>mRNA_2874 ID=mRNA_2874|Name=jgi.p|Nanoce1779_2|583644|organism=Nannochloropsis oceanica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_7:141768..143440+ (Nannochloropsis oceanica)
ATGATGCGTAGCATGGCACACTCTGCGCGGCGAGGGCCGCTTGTCAATAT
GGGTTTGAGAGGTATTCGTAGGAGCGGCAGCTGCAGCGACAAAAGCAACT
GTGCCATCAGTCAGGCATTGGGCCGCTCCGCAGCACCATCATCTCCTCCA
TCGCTGTACCCCACCACCCTCTCCGCTGCATGGAAGCAGCATCAGCACCT
ATTGCTCTACAATTCGCGACGGGGCATGTCGTCTGATTCAGCCCCTCCCT
CGTCGTTTGCCAATCCCAGGGCAAGCACATCGTCACCGCAGGAGGGCGTC
GCACCAGGAAGCGTAGCAGCTGAGGAGGAAGAGAAGGAGAAGCCGCCTCC
TTTCCAGGACGTGGCATTTCCTTGGCGCACCGCCCCACGCATGCATCTCT
CCTTCCTTCAAGCTGCCAGCAAATGGCTCTCCGATGTATTTCCGCAGGCC
TTCATCCGTGGACTGTTTTACATGTCTGTTGGAAAGCTGATGGAGGCCCC
TGCTGAAGACCTTCGTGAAATTCTCTTCCGGTCCACCCGCTTCGCCTTCA
TCCAAGCCGTCCGTGGGATCTTTGAGGGGCAATGCAAGACCCCTCCTCCT
GCGTGGGAGTATACCAACGATGAGCTCAACCCTCCTTCCTCCGAATGGGA
ATTGGGGTACCCGCCTCTGTCTGAAATGATGGAGCCGAAGCTTTTAGAGA
TGTACCAAGACGTCGTTGCGCGTTTCCGGGCCAACAATCGAGAGGTTCGG
TTAGAATTGGAGAGCATCCATCCAATTTCAATGCATGATTTCAAGTTGGT
CATTGGCCCTCCGCGGGGCACGCCCTTACCGCCGGGCGCGACGAAGCACA
CAAGGGGAGGCGTGACGGTGATTGTACCGCAAATGCCCGAGGGAGGGGAG
GAGATGGAAGGGAGAGGAGGAGGACAGGAGATGGGCATGGGAAACAATGG
CCAGTCGTTCATGGCGGCGGTGAGGGGGTCCAAAAACCATATGATTTTCC
AGATGGCCGTGACTTTTAAGTGCAGAGAGCTGTTCTGTGTGAAGGATGTA
GAGACGGATGAGGCGGTTCAAGGACAGGAAGAAATGCGGGAAACGGAGCA
TGTTTGTCGGTTTGAGATCGACTTTGATAATCGCGCGCAGTTGAGCCAAG
AATGGCGGTTGGTGGACATCGACGACTGGATGAATGGGAATGTCTACCTC
ACCGGCATGCCCGACGATGGAGAGATGTCAACCGAGAGAAGTGGGGAGGG
TGCGCATGGTCGGCGGAAAGATGACTGAATGATGCGTAGCATGGCACACT
CTGCGCGGCGAGGGCCGCTTGTCAATATGGGTTTGAGAGGTATTCGTAGG
AGCGGCAGCTGCAGCGACAAAAGCAACTGTGCCATCAGTCAGGCATTGGG
CCGCTCCGCAGCACCATCATCTCCTCCATCGCTGTACCCCACCACCCTCT
CCGCTGCATGGAAGCAGCATCAGCACCTATTGCTCTACAATTCGCGACGG
GGCATGTCGTCTGATTCAGCCCCTCCCTCGTCGTTTGCCAATCCCAGGGC
AAGCACATCGTCACCGCAGGAGGGCGTCGCACCAGGAAGCGTAGCAGCTG
AGGAGGAAGAGAAGGAGAAGCCGCCTCCTTTCCAGGACGTGGCATTTCCT
TGGCGCACCGCCCCACGCATGCATCTCTCCTTCCTTCAAGCTGCCAGCAA
ATGGCTCTCCGATGTATTTCCGCAGGCCTTCATCCGTGGACTGTTTTACA
TGTCTGTTGGAAAGCTGATGGAGGCCCCTGCTGAAGACCTTCGTGAAATT
CTCTTCCGGTCCACCCGCTTCGCCTTCATCCAAGCCGTCCGTGGGATCTT
TGAGGGGCAATGCAAGACCCCTCCTCCTGCGTGGGAGTATACCAACGATG
AGCTCAACCCTCCTTCCTCCGAATGGGAATTGGGGTACCCGCCTCTGTCT
GAAATGATGGAGCCGAAGCTTTTAGAGATGTACCAAGACGTCGTTGCGCG
TTTCCGGGCCAACAATCGAGAGGTTCGGTTAGAATTGGAGAGCATCCATC
CAATTTCAATGCATGATTTCAAGTTGGTCATTGGCCCTCCGCGGGGCACG
CCCTTACCGCCGGGCGCGACGAAGCACACAAGGGGAGGCGTGACGGTGAT
TGTACCGCAAATGCCCGAGGGAGGGGAGGAGATGGAAGGGAGAGGAGGAG
GACAGGAGATGGGCATGGGAAACAATGGCCAGTCGTTCATGGCGGCGGTG
AGGGGGTCCAAAAACCATATGATTTTCCAGATGGCCGTGACTTTTAAGTG
CAGAGAGCTGTTCTGTGTGAAGGATGTAGAGACGGATGAGGCGGTTCAAG
GACAGGAAGAAATGCGGGAAACGGAGCATGTTTGTCGGTTTGAGATCGAC
TTTGATAATCGCGCGCAGTTGAGCCAAGAATGGCGGTTGGTGGACATCGA
CGACTGGATGAATGGGAATGTCTACCTCACCGGCATGCCCGACGATGGAG
AGATGTCAACCGAGAGAAGTGGGGAGGGTGCGCATGGTCGGCGGAAAGAT
GACTGA

Synonyms

Publications