jgi.p|Nanoce1779_2|526065, mRNA_2872 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526065
Unique NamemRNA_2872
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length408
Alignment locationscaffold_7:138575..138982 +

Link to JBrowse

Properties
Property NameValue
TranscriptId526151
TrackFilteredModels2
ProteinId526065
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:138575..138982 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526065gene_2872Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526065mRNA_2872-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2872CDS_2872Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2872 ID=mRNA_2872|Name=jgi.p|Nanoce1779_2|526065|organism=Nannochloropsis oceanica|type=mRNA|length=408bp
ATGGACCAAGAGGATGGAAGCAAGGTCGATGAGGAGGATGAAGACAAGGC
CTTGTCGTCGCTTGCGGACGAGGCGGCGGCTGATGCAGCAGCCGCGGCAG
CGGCAGGGGGAAAGCCTAAGAAACACCGGCCTCGGTTCACGGAGAATGAT
GTGATAGGGTTTAACGGCATTGAGCGTGTGTATGCGACTTTCTCGAGTTT
ATGTCCTTTTCGAGGGGCGGGCCACGAGGCGGAGGACTTGCATCGGTTGC
TGCGTTGTTACAAGGAGTGGGCGTATCAGTTGTTCCCGTATTTGGCGTTT
GAGGACTTGGTGGACAGGATGCAGAAGTTGAGTGGCAAGGCGAGGGTGAG
GCAATGCTTGGAAGGGCTGAGGGAGAAGGAGAGGGAACGGTACTTGGTAC
GTTTTTAG
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protein sequence of jgi.p|Nanoce1779_2|526065

>mRNA_2872-protein ID=mRNA_2872-protein|Name=jgi.p|Nanoce1779_2|526065|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MDQEDGSKVDEEDEDKALSSLADEAAADAAAAAAAGGKPKKHRPRFTEND
VIGFNGIERVYATFSSLCPFRGAGHEAEDLHRLLRCYKEWAYQLFPYLAF
EDLVDRMQKLSGKARVRQCLEGLREKERERYLVRF*
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mRNA from alignment at scaffold_7:138575..138982+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2872 ID=mRNA_2872|Name=jgi.p|Nanoce1779_2|526065|organism=Nannochloropsis oceanica|type=mRNA|length=408bp|location=Sequence derived from alignment at scaffold_7:138575..138982+ (Nannochloropsis oceanica)
ATGGACCAAGAGGATGGAAGCAAGGTCGATGAGGAGGATGAAGACAAGGC
CTTGTCGTCGCTTGCGGACGAGGCGGCGGCTGATGCAGCAGCCGCGGCAG
CGGCAGGGGGAAAGCCTAAGAAACACCGGCCTCGGTTCACGGAGAATGAT
GTGATAGGGTTTAACGGCATTGAGCGTGTGTATGCGACTTTCTCGAGTTT
ATGTCCTTTTCGAGGGGCGGGCCACGAGGCGGAGGACTTGCATCGGTTGC
TGCGTTGTTACAAGGAGTGGGCGTATCAGTTGTTCCCGTATTTGGCGTTT
GAGGACTTGGTGGACAGGATGCAGAAGTTGAGTGGCAAGGCGAGGGTGAG
GCAATGCTTGGAAGGGCTGAGGGAGAAGGAGAGGGAACGGTACTTGGTAC
GTTTTTAG
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Coding sequence (CDS) from alignment at scaffold_7:138575..138982+

>mRNA_2872 ID=mRNA_2872|Name=jgi.p|Nanoce1779_2|526065|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_7:138575..138982+ (Nannochloropsis oceanica)
ATGGACCAAGAGGATGGAAGCAAGGTCGATGAGGAGGATGAAGACAAGGC
CTTGTCGTCGCTTGCGGACGAGGCGGCGGCTGATGCAGCAGCCGCGGCAG
CGGCAGGGGGAAAGCCTAAGAAACACCGGCCTCGGTTCACGGAGAATGAT
GTGATAGGGTTTAACGGCATTGAGCGTGTGTATGCGACTTTCTCGAGTTT
ATGTCCTTTTCGAGGGGCGGGCCACGAGGCGGAGGACTTGCATCGGTTGC
TGCGTTGTTACAAGGAGTGGGCGTATCAGTTGTTCCCGTATTTGGCGTTT
GAGGACTTGGTGGACAGGATGCAGAAGTTGAGTGGCAAGGCGAGGGTGAG
GCAATGCTTGGAAGGGCTGAGGGAGAAGGAGAGGGAACGGTACTTGGTAC
GTTTTTAG
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Synonyms
Publications