jgi.p|Nanoce1779_2|629162, mRNA_2870 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629162
Unique NamemRNA_2870
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length746
Alignment locationscaffold_7:131520..132265 +

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Properties
Property NameValue
TranscriptId629248
TrackFilteredModels2
ProteinId629162
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:131520..132265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629162gene_2870Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629162mRNA_2870-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2870CDS_2870Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Nanoce1779_2|629162|organism=Nannochloropsis oceanica|type=mRNA|length=746bp
CAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGGAGAGGCGGCAGCAGCGAGACGAGGAAGGTAAAA
AGAAGGAAGAGCGTTGGATGGAGGAAATGAGAGAAAAGATCGCCGCCTTC
GGAATGCGGGGGGAAGGAAGAGGAGAAGGAGGTGGAGGCATAGAGGGACA
GGCGGAGGTCGAAGAGGGAGTAAAATGTGGCGAGGTAAGGAAGGCGGAGC
AAGCGGGGGGGTATGAAGAGATTGACAGCCAGTTGCCTGTGAGTGGTGAG
CAGCTCAAGGGGATGATGGAAAAGGGTCGCATTGCGAACAATGTGTCGGC
AGCACCCTATCCCCCGTTAAAGGAGGCGATGAGAAATGAGGAGGAGAAAG
AAGAGGGGGAGGAGAGTGAGAAGCGGCTTCAGAGGAAGGACATGGCGTGG
AAGGAGCACGAAGAGAGTAGAGTGAGGATAAAGATTGAGAATGATAGGCA
CCGTATGACGGATCCGAATTAAAGGGAGATGCATTATGGAGAGCGAGAGG
GGGAGGAAAGGTTGTGGGGGTATAATCCGAATCGGAGAAGAAATGCATCA
TTGGCAGGAGAAGAAAGAGTAAGGAGCAACGTCAATAAAAAAACACCTCG
AGGGGGATAATTTCAATGAGGGGTATGCATGACATGTAAGGGGAATGAGA
AGTACAAACGAACCAATGAGCTACAAGTCCATTCAATTTATGTATT
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protein sequence of jgi.p|Nanoce1779_2|629162

>mRNA_2870-protein ID=mRNA_2870-protein|Name=jgi.p|Nanoce1779_2|629162|organism=Nannochloropsis oceanica|type=polypeptide|length=135bp
MEEMREKIAAFGMRGEGRGEGGGGIEGQAEVEEGVKCGEVRKAEQAGGYE
EIDSQLPVSGEQLKGMMEKGRIANNVSAAPYPPLKEAMRNEEEKEEGEES
EKRLQRKDMAWKEHEESRVRIKIENDRHRMTDPN*
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mRNA from alignment at scaffold_7:131520..132265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Nanoce1779_2|629162|organism=Nannochloropsis oceanica|type=mRNA|length=746bp|location=Sequence derived from alignment at scaffold_7:131520..132265+ (Nannochloropsis oceanica)
CAACAGCAGCAGCAACAACAGCAGCAGCAACAACAGCAGCAACAGCAGCA
GCAGCAGCAGCAGCAGGAGAGGCGGCAGCAGCGAGACGAGGAAGGTAAAA
AGAAGGAAGAGCGTTGGATGGAGGAAATGAGAGAAAAGATCGCCGCCTTC
GGAATGCGGGGGGAAGGAAGAGGAGAAGGAGGTGGAGGCATAGAGGGACA
GGCGGAGGTCGAAGAGGGAGTAAAATGTGGCGAGGTAAGGAAGGCGGAGC
AAGCGGGGGGGTATGAAGAGATTGACAGCCAGTTGCCTGTGAGTGGTGAG
CAGCTCAAGGGGATGATGGAAAAGGGTCGCATTGCGAACAATGTGTCGGC
AGCACCCTATCCCCCGTTAAAGGAGGCGATGAGAAATGAGGAGGAGAAAG
AAGAGGGGGAGGAGAGTGAGAAGCGGCTTCAGAGGAAGGACATGGCGTGG
AAGGAGCACGAAGAGAGTAGAGTGAGGATAAAGATTGAGAATGATAGGCA
CCGTATGACGGATCCGAATTAAAGGGAGATGCATTATGGAGAGCGAGAGG
GGGAGGAAAGGTTGTGGGGGTATAATCCGAATCGGAGAAGAAATGCATCA
TTGGCAGGAGAAGAAAGAGTAAGGAGCAACGTCAATAAAAAAACACCTCG
AGGGGGATAATTTCAATGAGGGGTATGCATGACATGTAAGGGGAATGAGA
AGTACAAACGAACCAATGAGCTACAAGTCCATTCAATTTATGTATT
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Coding sequence (CDS) from alignment at scaffold_7:131520..132265+

>mRNA_2870 ID=mRNA_2870|Name=jgi.p|Nanoce1779_2|629162|organism=Nannochloropsis oceanica|type=CDS|length=405bp|location=Sequence derived from alignment at scaffold_7:131520..132265+ (Nannochloropsis oceanica)
ATGGAGGAAATGAGAGAAAAGATCGCCGCCTTCGGAATGCGGGGGGAAGG
AAGAGGAGAAGGAGGTGGAGGCATAGAGGGACAGGCGGAGGTCGAAGAGG
GAGTAAAATGTGGCGAGGTAAGGAAGGCGGAGCAAGCGGGGGGGTATGAA
GAGATTGACAGCCAGTTGCCTGTGAGTGGTGAGCAGCTCAAGGGGATGAT
GGAAAAGGGTCGCATTGCGAACAATGTGTCGGCAGCACCCTATCCCCCGT
TAAAGGAGGCGATGAGAAATGAGGAGGAGAAAGAAGAGGGGGAGGAGAGT
GAGAAGCGGCTTCAGAGGAAGGACATGGCGTGGAAGGAGCACGAAGAGAG
TAGAGTGAGGATAAAGATTGAGAATGATAGGCACCGTATGACGGATCCGA
ATTAA
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Synonyms
Publications