|
|
Properties
| Property Name | Value |
|---|
| TranscriptId | 576905 |
| Track | FilteredModels2 |
| ProteinId | 576819 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:708035..710625 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_287 ID=mRNA_287|Name=jgi.p|Nanoce1779_2|576819|organism=Nannochloropsis oceanica|type=mRNA|length=2472bp
CAGGCGCTTTTCCCTTCGTGTAGGTAGGGCAAGAAGGGAGACGTCCATCT
CAAGCGGCCTGCAACTCGCCACGAGACAAAAACACGCGCATCTCTTTAAT
CTCACGCGGGCACAGCCTACAGATGCTATCCAAACGCCAGCTTACGGGAG
GCGTAGCGCTAGCACTATTCAGCGCGTATCCGGCACACTCCTTCTGTTAC
TCCCGTTTCAGTTTGCCAGTTGTGGATAGAACGACTCTCTCCTCCGCCTC
CCCCTCCTCCTCCATTTCCTCCTCCTCCCCTTTCTCTGGCAGATCGCTAC
CAAGCAGTCGCGGCGGCAACGCACGCACGTATGGAGAGCCTCTACGTGTC
TCGATGCCCTTTCACATAAGGTTTAGTACCGGTGTAGCCATGCCACCGGA
CGACTCTCCCTCCTCCTATTCCTCCTCATCCCGGTCATCATCCACCGCTT
CCCTCTACTCAGCCCCCACCTCCTCCTCTTCCCCCTCCTCTTTCCCCGCC
TTGCCCAGCCGAGGATGGAGAATAGAATGGTTTAAGGGCCTCAGGGAGGA
CATTGCCAATCGTAGGCCGCTCTATAAATCGGATTGGACCGATGGAATGA
AAGTAAAGACGATTCCGACCATCCTCTTTTTATACTTTGCCTGTTTGGCT
CCTGCGGTTGCATTTGGAGGGATCAGCTATGGGTTGACACAGGGGGCTAT
GGGCGTCATTGAGTTCTTGCTGTCTTGTGGGGTGTCGGGCATGTTGTATG
CAATTTTTTCGGGGCAGCCAATGACCTTCATCGGCCCCACGGGACTGACA
TTGTGTTTTATGGCTGCGCTCTTCAATTTTTGCAATTCTTTTGGGTTGGC
GTTCATGCCCATGTACACCTGGGTAGGGATCTGGACGAGCCTGATGCTTG
TGACGCTGTCATCCGCGAATGCCTGTTTGTTGACCAAGCACTGTACGCGC
TTTACGGACGAGGTGTTCAACGCGCTCTTGGCGCTGAATTTTACCTACGA
AGCTCTCAAAAATATCGTCGTCCGCTTCTTCTCCACCGGTACCGACAAAA
CCCAACCCTTCCTCGCCCTCAACATGGCCTTGGCAACATTTGCCCTGTCC
CAACGCCTGGTCTCGTACCGTTCTTCGATCCTCTTCACGCGTCGCATCCG
AGGCTTCTTGTCGGATTTCGGCCCCGCCCTCACCATCATCATCATGACGT
TGCTCGGCTCCCTACCCATGGTCCGTGGCCTGGGCATCGAGTATTTGAAA
GCCCCGAAACGGTTCCAGTTCGGTAACGGGCGGCGTTTATTCGTCCCTTT
GTGGGATTTACCGGTCTGGGCGCGTGGATTGGCGTTGGTACCGGCGGCGG
CCTTGACAGTGTTGTTCTTTTTAGATCACAATATTAGTGTGCGGGTGGTA
AATTCACCCGACAACAAGATGAAGAAAAGCCCGGCGTATCACCTGGATTT
GTTTGTGCTAGGGAGCATTGTCTTTTTGTGCTCGATTGTGGGGTTGCCGT
GGATGTGTGCGGCGACGATTCAGAGCCTGAATCATGTGAGGAGTGTCACT
GAGTATGAACCTGTCGGAGTAGGAGAAGGAGGAAAGGGGGGGGGAACAGC
AGCAGTAGTTGTAAGCGGAAGCGGAGGAGGTAAAGGAGATGTAAAACAGG
AAGAGGAAGAGACGGCGACTGTGATGGAGACGCGGTTGACGGGCTTGGGG
ATCCACGCCCTGGTGTTGTCGAGCATTGGCCTTTTGCCTCTATTGAGACG
TATCCCGATTCCCGTGATCAGTGGCATCTTTCTTTATCTTGGCCGGACGG
TCATGACGGGCAATACGTTCTTACAACGGGTCAAGGGCGCGTTTTTTGAC
AAGAGTATGCTACCCGAAGACTCGCCCTTCAAACGGTTGGGGAGAACGAC
TGTGAACAAGTTTACGGCGATTCAGGTGGGCTGCTTGGCGGTGTTGTGGA
CCTTGAAGAGTAATCCGGCAACCGGGATGTTTTTCCCGAGCGTGATTGGG
ATGTTGATTCTGACGAGGATCTTGGTGATCCCGCGGTTGTTTTCCAAGGA
GGAGATTTCGGTGTTGGATGTGGATTAGGGAGAGACGGAAAATGGGGCGG
CGGAGGGAGAAAAATCAACAGAATTTCGTGTATCGGGGAGGTCTACTGGG
CTCAGACAAATGAAAACACAAAGCAAAGAACGAAAACAATAGTGGTTTGG
GGGCATGAAGCTCGTTACAATGCCGTCGCTGGACTGGGGGGTGAAGGAAC
GGCTGGGAAGGGATCGAACCCATATCCCATGCGCCCCCCCCCCCCCATTT
TGGTCCCTTCACTCATTGTAATACACAAACTTCCAACGGATACAGCAGCG
AAAGAGGAGAGCTACAGATAATGGTAGGAAAGTACCACTTGACTATTGAG
TTGCCAGTCTGCCATTTGTTTCTTTCTTTGGTGTTTGCTTTGTATTCGGT
CTGTGTGGGATACAGGAAACGG back to topprotein sequence of jgi.p|Nanoce1779_2|576819 >mRNA_287-protein ID=mRNA_287-protein|Name=jgi.p|Nanoce1779_2|576819|organism=Nannochloropsis oceanica|type=polypeptide|length=652bp
MLSKRQLTGGVALALFSAYPAHSFCYSRFSLPVVDRTTLSSASPSSSISS
SSPFSGRSLPSSRGGNARTYGEPLRVSMPFHIRFSTGVAMPPDDSPSSYS
SSSRSSSTASLYSAPTSSSSPSSFPALPSRGWRIEWFKGLREDIANRRPL
YKSDWTDGMKVKTIPTILFLYFACLAPAVAFGGISYGLTQGAMGVIEFLL
SCGVSGMLYAIFSGQPMTFIGPTGLTLCFMAALFNFCNSFGLAFMPMYTW
VGIWTSLMLVTLSSANACLLTKHCTRFTDEVFNALLALNFTYEALKNIVV
RFFSTGTDKTQPFLALNMALATFALSQRLVSYRSSILFTRRIRGFLSDFG
PALTIIIMTLLGSLPMVRGLGIEYLKAPKRFQFGNGRRLFVPLWDLPVWA
RGLALVPAAALTVLFFLDHNISVRVVNSPDNKMKKSPAYHLDLFVLGSIV
FLCSIVGLPWMCAATIQSLNHVRSVTEYEPVGVGEGGKGGGTAAVVVSGS
GGGKGDVKQEEEETATVMETRLTGLGIHALVLSSIGLLPLLRRIPIPVIS
GIFLYLGRTVMTGNTFLQRVKGAFFDKSMLPEDSPFKRLGRTTVNKFTAI
QVGCLAVLWTLKSNPATGMFFPSVIGMLILTRILVIPRLFSKEEISVLDV
D* back to topmRNA from alignment at scaffold_3:708035..710625- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_287 ID=mRNA_287|Name=jgi.p|Nanoce1779_2|576819|organism=Nannochloropsis oceanica|type=mRNA|length=2591bp|location=Sequence derived from alignment at scaffold_3:708035..710625- (Nannochloropsis oceanica)
CAGGCGCTTTTCCCTTCGTGTAGGTAGGGCAAGAAGGGAGACGTCCATCT
CAAGCGGCCTGCAACTCGCCACGAGACAAAAACACGCGCATCTCTTTAAT
CTCACGCGGGCACAGCCTACAGATGCTATCCAAACGCCAGCTTACGGGAG
GCGTAGCGCTAGCACTATTCAGCGCGTATCCGGCACACTCCTTCTGTTAC
TCCCGTTTCAGTTTGCCAGTTGTGGATAGAACGACTCTCTCCTCCGCCTC
CCCCTCCTCCTCCATTTCCTCCTCCTCCCCTTTCTCTGGCAGATCGCTAC
CAAGCAGTCGCGGCGGCAACGCACGCACGTATGGAGGTAAGGGAATCTAC
TGAATGGGCTATTAGGGTTGCACGGCAGGTGTAAGGAAAGGAGCTGCTTC
AACCCTCGCGTCCGTCTTCCTCACACCCACTGAATCGCCTCTCCCTCTCT
CACAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGTTTAGTACCG
GTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCCTCCTCATCC
CGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTCCTCCTCTTC
CCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAATAGAATGGT
TTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTCTATAAATCG
GATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCATCCTCTTTTT
ATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGATCAGCTATG
GGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTGTCTTGTGGG
GTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAATGACCTTCAT
CGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCTTCAATTTTT
GCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGGGTAGGGATC
TGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGCCTGTTTGTT
GACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACGCGCTCTTGG
CGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTCCGCTTCTTC
TCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAACATGGCCTT
GGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTTCTTCGATCC
TCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGCCCCGCCCTC
ACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGTCCGTGGCCT
GGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCGGTAACGGGC
GGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCGCGTGGATTG
GCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTTAGATCACAA
TATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGAAGAAAAGCC
CGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTCTTTTTGTGC
TCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCAGAGCCTGAA
TCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAGGAGAAGGAG
GAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGCGGAGGAGGT
AAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGTGATGGAGAC
GCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGAGCATTGGCC
TTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGTGGCATCTTT
CTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTTACAACGGGT
CAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACTCGCCCTTCA
AACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATTCAGGTGGGC
TGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAACCGGGATGTT
TTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCTTGGTGATCC
CGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTGGATTAGGGA
GAGACGGAAAATGGGGCGGCGGAGGGAGAAAAATCAACAGAATTTCGTGT
ATCGGGGAGGTCTACTGGGCTCAGACAAATGAAAACACAAAGCAAAGAAC
GAAAACAATAGTGGTTTGGGGGCATGAAGCTCGTTACAATGCCGTCGCTG
GACTGGGGGGTGAAGGAACGGCTGGGAAGGGATCGAACCCATATCCCATG
CGCCCCCCCCCCCCCATTTTGGTCCCTTCACTCATTGTAATACACAAACT
TCCAACGGATACAGCAGCGAAAGAGGAGAGCTACAGATAATGGTAGGAAA
GTACCACTTGACTATTGAGTTGCCAGTCTGCCATTTGTTTCTTTCTTTGG
TGTTTGCTTTGTATTCGGTCTGTGTGGGATACAGGAAACGG back to topCoding sequence (CDS) from alignment at scaffold_3:708035..710625- >mRNA_287 ID=mRNA_287|Name=jgi.p|Nanoce1779_2|576819|organism=Nannochloropsis oceanica|type=CDS|length=3912bp|location=Sequence derived from alignment at scaffold_3:708035..710625- (Nannochloropsis oceanica)
AGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGTTTAGTACCGGTGTA
GCCATGCCACCGGACGACTCTCCCTCCTCCTATTCCTCCTCATCCCGGTC
ATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTCCTCCTCTTCCCCCT
CCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAATAGAATGGTTTAAG
GGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTCTATAAATCGGATTG
GACCGATGGAATGAAAGTAAAGACGATTCCGACCATCCTCTTTTTATACT
TTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGATCAGCTATGGGTTG
ACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTGTCTTGTGGGGTGTC
GGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAATGACCTTCATCGGCC
CCACGGGACTGACATTGTGTTTTATGGCTGCGCTCTTCAATTTTTGCAAT
TCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGGGTAGGGATCTGGAC
GAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGCCTGTTTGTTGACCA
AGCACTGTACGCGCTTTACGGACGAGGTGTTCAACGCGCTCTTGGCGCTG
AATTTTACCTACGAAGCTCTCAAAAATATCGTCGTCCGCTTCTTCTCCAC
CGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAACATGGCCTTGGCAA
CATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTTCTTCGATCCTCTTC
ACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGCCCCGCCCTCACCAT
CATCATCATGACGTTGCTCGGCTCCCTACCCATGGTCCGTGGCCTGGGCA
TCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCGGTAACGGGCGGCGT
TTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCGCGTGGATTGGCGTT
GGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTTAGATCACAATATTA
GTGTGCGGGTGGTAAATTCACCCGACAACAAGATGAAGAAAAGCCCGGCG
TATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTCTTTTTGTGCTCGAT
TGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCAGAGCCTGAATCATG
TGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAGGAGAAGGAGGAAAG
GGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGCGGAGGAGGTAAAGG
AGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGTGATGGAGACGCGGT
TGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGAGCATTGGCCTTTTG
CCTCTATTGAGACGTATCCCGATTCCCGTGATCAGTGGCATCTTTCTTTA
TCTTGGCCGGACGGTCATGACGGGCAATACGTTCTTACAACGGGTCAAGG
GCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACTCGCCCTTCAAACGG
TTGGGGAGAACGACTGTGAACAAGTTTACGGCGATTCAGGTGGGCTGCTT
GGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAACCGGGATGTTTTTCC
CGAGCGTGATTGGGATGTTGATTCTGACGAGGATCTTGGTGATCCCGCGG
TTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTGGATTAGATGCTATC
CAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAGCGCGTATC
CGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTGTGGATAGA
ACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCCTCCTCCCC
TTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGCACGCACGT
ATGGAGAGCCTCTACGTGTCTCGATGCCCTTTCACATAAGGTTTAGTACC
GGTGTAGCCATGCCACCGGACGACTCTCCCTCCTCCTATTCCTCCTCATC
CCGGTCATCATCCACCGCTTCCCTCTACTCAGCCCCCACCTCCTCCTCTT
CCCCCTCCTCTTTCCCCGCCTTGCCCAGCCGAGGATGGAGAATAGAATGG
TTTAAGGGCCTCAGGGAGGACATTGCCAATCGTAGGCCGCTCTATAAATC
GGATTGGACCGATGGAATGAAAGTAAAGACGATTCCGACCATCCTCTTTT
TATACTTTGCCTGTTTGGCTCCTGCGGTTGCATTTGGAGGGATCAGCTAT
GGGTTGACACAGGGGGCTATGGGCGTCATTGAGTTCTTGCTGTCTTGTGG
GGTGTCGGGCATGTTGTATGCAATTTTTTCGGGGCAGCCAATGACCTTCA
TCGGCCCCACGGGACTGACATTGTGTTTTATGGCTGCGCTCTTCAATTTT
TGCAATTCTTTTGGGTTGGCGTTCATGCCCATGTACACCTGGGTAGGGAT
CTGGACGAGCCTGATGCTTGTGACGCTGTCATCCGCGAATGCCTGTTTGT
TGACCAAGCACTGTACGCGCTTTACGGACGAGGTGTTCAACGCGCTCTTG
GCGCTGAATTTTACCTACGAAGCTCTCAAAAATATCGTCGTCCGCTTCTT
CTCCACCGGTACCGACAAAACCCAACCCTTCCTCGCCCTCAACATGGCCT
TGGCAACATTTGCCCTGTCCCAACGCCTGGTCTCGTACCGTTCTTCGATC
CTCTTCACGCGTCGCATCCGAGGCTTCTTGTCGGATTTCGGCCCCGCCCT
CACCATCATCATCATGACGTTGCTCGGCTCCCTACCCATGGTCCGTGGCC
TGGGCATCGAGTATTTGAAAGCCCCGAAACGGTTCCAGTTCGGTAACGGG
CGGCGTTTATTCGTCCCTTTGTGGGATTTACCGGTCTGGGCGCGTGGATT
GGCGTTGGTACCGGCGGCGGCCTTGACAGTGTTGTTCTTTTTAGATCACA
ATATTAGTGTGCGGGTGGTAAATTCACCCGACAACAAGATGAAGAAAAGC
CCGGCGTATCACCTGGATTTGTTTGTGCTAGGGAGCATTGTCTTTTTGTG
CTCGATTGTGGGGTTGCCGTGGATGTGTGCGGCGACGATTCAGAGCCTGA
ATCATGTGAGGAGTGTCACTGAGTATGAACCTGTCGGAGTAGGAGAAGGA
GGAAAGGGGGGGGGAACAGCAGCAGTAGTTGTAAGCGGAAGCGGAGGAGG
TAAAGGAGATGTAAAACAGGAAGAGGAAGAGACGGCGACTGTGATGGAGA
CGCGGTTGACGGGCTTGGGGATCCACGCCCTGGTGTTGTCGAGCATTGGC
CTTTTGCCTCTATTGAGACGTATCCCGATTCCCGTGATCAGTGGCATCTT
TCTTTATCTTGGCCGGACGGTCATGACGGGCAATACGTTCTTACAACGGG
TCAAGGGCGCGTTTTTTGACAAGAGTATGCTACCCGAAGACTCGCCCTTC
AAACGGTTGGGGAGAACGACTGTGAACAAGTTTACGGCGATTCAGGTGGG
CTGCTTGGCGGTGTTGTGGACCTTGAAGAGTAATCCGGCAACCGGGATGT
TTTTCCCGAGCGTGATTGGGATGTTGATTCTGACGAGGATCTTGGTGATC
CCGCGGTTGTTTTCCAAGGAGGAGATTTCGGTGTTGGATGTGGATTAGAT
GCTATCCAAACGCCAGCTTACGGGAGGCGTAGCGCTAGCACTATTCAGCG
CGTATCCGGCACACTCCTTCTGTTACTCCCGTTTCAGTTTGCCAGTTGTG
GATAGAACGACTCTCTCCTCCGCCTCCCCCTCCTCCTCCATTTCCTCCTC
CTCCCCTTTCTCTGGCAGATCGCTACCAAGCAGTCGCGGCGGCAACGCAC
GCACGTATGGAG back to top
|