jgi.p|Nanoce1779_2|564676, mRNA_2869 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564676
Unique Name	mRNA_2869
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1302
Alignment location	scaffold_7:128034..130087 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	564762
Track	FilteredModels2
ProteinId	564676

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:128034..130087 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564676	gene_2869	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564676	mRNA_2869-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2869	CDS_2869	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:128034..130087+
coding sequence from alignment at scaffold_7:128034..130087+

mRNA sequence

>mRNA_2869 ID=mRNA_2869|Name=jgi.p|Nanoce1779_2|564676|organism=Nannochloropsis oceanica|type=mRNA|length=1302bp
ATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGCGTGT
GGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCCCTAC
AAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAAGACG
GTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAGAGGC
AATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACGAATG
ATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGCTGAT
GCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTAGCAA
GTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGGCATCAG
AGGGGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGTGGTG
GAGGACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGTGCAG
TGGGGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAGGAAC
AGCAGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGATACA
AGAGAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTCCCCG
TGCTGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTGGAGG
GGGAGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAATGCA
ATGGACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGGATGG
GGGGGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGGTGCA
ATGGAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCCACCG
GAGGAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATGGAGG
GATAGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTGGAGG
AGAGCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGAGGAG
GAGGAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATCAGGT
GCAGGAGGAGCAGGAGGAGAGGCGGCAGGAGGGGGGATGGATGGTCTGGC
CCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGTGCCGTTGCGGCAGG
TGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGGAGCGGCACTGGGAT
AG

protein sequence of jgi.p|Nanoce1779_2|564676

>mRNA_2869-protein ID=mRNA_2869-protein|Name=jgi.p|Nanoce1779_2|564676|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSNVAVAPPDLVAGRRVVVDPSLCSLLRKQPALQGQAAVLQEDVTAWSKT
VRVRFDGGKTGRIEVEAIRPSLNAAPEELAATNDDDGSAGGSTDSHSAAD
AAAGDKAGSGSSQGSSKSMRGSRRSSSSTPVASEGKEKEEVSGRSYNIVV
EDEGGGEGGAEEEQRCSGGAVEGEGEGEEEEEEQQAQRPSWTDMVEGQDT
REGTVATGAGARKEVPRAGSPDEEEEEQQQIVEGEGGREGGVVPALHENA
MDAMAVVPSSQEGSEDGGEVLSKRGGRTTRRRCNGGKRQSSTTLPPVQPP
EEEKWREVEEGEEEDGGIEVAGMVGGKERRELEESDEEEEEMRGHVAKEE
EEEEEDGEEEEEEEEEEEEERSQRSAPRKRAIRCRRSRRRGGRRGDGWSG
PAGWELDDGGTGAVAAGGTACRSGEKACGAALG*

mRNA from alignment at scaffold_7:128034..130087+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2869 ID=mRNA_2869|Name=jgi.p|Nanoce1779_2|564676|organism=Nannochloropsis oceanica|type=mRNA|length=2054bp|location=Sequence derived from alignment at scaffold_7:128034..130087+ (Nannochloropsis oceanica)
ATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGCGTGT
GGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCCCTAC
AAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAAGACG
GTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAGAGGC
AATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACGAATG
ATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGCTGAT
GCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTAGCAA
GTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGAGTGCAC
CTAGCCCTCTTCCTCTTCCTCCTCCTCCTGCCTTGGGCCGCCGGAACAGC
AGCCGCAGTGCCATAGCGACACCCGCACCTGCTGCAGAGGAGAAGACGCC
GACGGCAGCAGCTGCAGCAGCAGCAACCTCAGAAGGAAGAGAAGAAAGTG
GAGGCGGGGGGAGAGGTGGTGGATCAGCGACAAGTACTCCTTCTCCTTCA
CGAGCCTCTTCTCCTGGACCTGCTGCCACTGCACAAGCAAAGGCGACCAC
TACTGCAGCCAGCCGTATCGGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG
GTCCAATAAAATTAACCGAATTCGACCCTGAAACATGGGTGGGTAAAACT
GTACGATTCACGCAAGCCTCCGGACCACGGAGTAAGGGAAAGAAGGGGAG
GGTGCTCAGGGCAGGAGGGGGTTGGGTGACTGTCGAGGTGGCATCAGAGG
GGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGTGGTGGAG
GACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGTGCAGTGG
GGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAGGAACAGC
AGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGATACAAGA
GAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTCCCCGTGC
TGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTGGAGGGGG
AGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAATGCAATG
GACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGGATGGGGG
GGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGGTGCAATG
GAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCCACCGGAG
GAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATGGAGGGAT
AGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTGGAGGAGA
GCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGAGGAGGAG
GAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATCAGGTACG
AGAAGGATAAGGAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAG
GAGGAGGAAGGGGGGGGGGCAGGGCGGGATGCTGCGGCTGCCGCTTTATT
CGCCTCTTCCTCCGCCTCCACCATTGGCGATGACGCCACGACAGCAGCAG
CAGCAGCAGCAACAGCAGCAACAGCAGCAACAACAACAAGAATAGCAGCT
GCGATTCCAGCAGGAGCAGCAGCAGCGGTTCAGACGCCTCCAAAGAAGCG
TGCCAAGGGCAGACCGAAGAAAGTGGTCGCTGGAGGCTCTCTTCCCACAG
GTGCAGGAGGAGCAGGAGGAGAGGCGGCAGGAGGGGGGATGGATGGTCTG
GCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGTGCCGTTGCGGCA
GGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGGAGCGGCACTGGG
ATAG

Coding sequence (CDS) from alignment at scaffold_7:128034..130087+

>mRNA_2869 ID=mRNA_2869|Name=jgi.p|Nanoce1779_2|564676|organism=Nannochloropsis oceanica|type=CDS|length=3906bp|location=Sequence derived from alignment at scaffold_7:128034..130087+ (Nannochloropsis oceanica)
ATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGCGTGT
GGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCCCTAC
AAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAAGACG
GTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAGAGGC
AATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACGAATG
ATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGCTGAT
GCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTAGCAA
GTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGGCATCAG
AGGGGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGTGGTG
GAGGACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGTGCAG
TGGGGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAGGAAC
AGCAGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGATACA
AGAGAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTCCCCG
TGCTGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTGGAGG
GGGAGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAATGCA
ATGGACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGGATGG
GGGGGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGGTGCA
ATGGAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCCACCG
GAGGAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATGGAGG
GATAGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTGGAGG
AGAGCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGAGGAG
GAGGAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATCAGGT
GCAGGAGGAGCAGGAGGAGAGGCGGCAGGAGGGGGGATGGATGGTCTGGC
CCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGTGCCGTTGCGGCAGG
TGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGGAGCGGCACTGGGAT
AGATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGCGT
GTGGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCCCT
ACAAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAAGA
CGGTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAGAG
GCAATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACGAA
TGATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGCTG
ATGCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTAGC
AAGTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGGCATC
AGAGGGGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGTGG
TGGAGGACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGTGC
AGTGGGGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAGGA
ACAGCAGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGATA
CAAGAGAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTCCC
CGTGCTGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTGGA
GGGGGAGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAATG
CAATGGACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGGAT
GGGGGGGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGGTG
CAATGGAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCCAC
CGGAGGAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATGGA
GGGATAGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTGGA
GGAGAGCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGAGG
AGGAGGAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATCAG
GTGCAGGAGGAGCAGGAGGAGAGGCGGCAGGAGGGGGGATGGATGGTCTG
GCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGTGCCGTTGCGGCA
GGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGGAGCGGCACTGGG
ATAGATGAGCAATGTCGCGGTGGCCCCGCCGGATCTTGTGGCAGGCAGGC
GTGTGGTGGTAGATCCCTCGCTTTGCTCCCTCTTGCGAAAGCAGCCGGCC
CTACAAGGCCAGGCAGCCGTGCTCCAGGAAGACGTGACGGCGTGGTCCAA
GACGGTGCGTGTGCGATTTGATGGGGGAAAGACAGGCCGGATAGAGGTAG
AGGCAATTCGTCCTTCGCTGAATGCGGCGCCCGAGGAGTTAGCAGCAACG
AATGATGACGATGGGAGTGCCGGCGGCAGCACGGACAGCCACAGTGCAGC
TGATGCAGCGGCGGGCGACAAGGCAGGAAGCGGCAGCAGTCAAGGCAGTA
GCAAGTCCATGCGGGGTTCTCGCCGGTCCTCCAGCTCGACCCCCGTGGCA
TCAGAGGGGAAGGAGAAGGAGGAGGTGTCAGGAAGGTCGTATAATATTGT
GGTGGAGGACGAGGGTGGTGGGGAAGGAGGGGCGGAGGAAGAGCAGAGGT
GCAGTGGGGGTGCTGTGGAGGGGGAAGGGGAGGGGGAGGAAGAAGAGGAG
GAACAGCAGGCGCAGCGGCCGTCCTGGACTGATATGGTGGAGGGGCAAGA
TACAAGAGAGGGCACAGTAGCGACAGGAGCAGGAGCAAGGAAGGAGGTTC
CCCGTGCTGGGTCCCCGGACGAGGAGGAGGAGGAGCAGCAGCAGATAGTG
GAGGGGGAGGGAGGGAGAGAGGGAGGTGTCGTTCCTGCCTTGCATGAAAA
TGCAATGGACGCCATGGCGGTAGTCCCGTCATCTCAGGAAGGGAGCGAGG
ATGGGGGGGAAGTATTGAGTAAGAGGGGAGGGAGGACAACGCGAAGAAGG
TGCAATGGAGGGAAGCGCCAGTCATCCACGACTTTGCCTCCGGTGCAGCC
ACCGGAGGAGGAGAAATGGAGGGAGGTCGAAGAGGGGGAAGAGGAGGATG
GAGGGATAGAGGTGGCGGGTATGGTTGGTGGGAAAGAGAGGAGGGAGTTG
GAGGAGAGCGACGAGGAAGAGGAGGAGATGAGAGGACATGTTGCGAAAGA
GGAGGAGGAGGAGGAAGAGGATGGGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAAAGGAGTCAGAGGAGTGCACCACGAAAGCGAGCGATC
AGGTGCAGGAGGAGCAGGAGGAGAGGCGGCAGGAGGGGGGATGGATGGTC
TGGCCCTGCTGGCTGGGAGCTCGACGACGGCGGCACGGGTGCCGTTGCGG
CAGGTGGAACTGCATGCAGAAGCGGTGAAAAGGCATGTGGAGCGGCACTG
GGATAG

Synonyms

Publications