jgi.p|Nanoce1779_2|583631, mRNA_2868 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583631
Unique Name	mRNA_2868
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2739
Alignment location	scaffold_7:122575..125313 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583717
Track	FilteredModels2
ProteinId	583631

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:122575..125313 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583631	gene_2868	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583631	mRNA_2868-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2868	CDS_2868	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:122575..125313-
coding sequence from alignment at scaffold_7:122575..125313-

mRNA sequence

>mRNA_2868 ID=mRNA_2868|Name=jgi.p|Nanoce1779_2|583631|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp
ACAGGCAAAGGCCGGCGTCCCGCCGCCCGCATCCCTGCCCTTCCTCCGCG
TTCGCACGCCCCCACACCCACACCTCACTCTAGCCACCACCGCGCCCACC
ACCCGCTCCCTTCCACCAATGGCTGAGGTACAAGTCGACACGCACGTGCG
CCGCTCCTCCCTTGACCTTTCCATGGCTGACGAGCTTTCCGGCTGTGGCG
CTGTCCTTCTTGGCGCTGGGCCCTTGTCTCCACGTGTCCTTCACCCGCCT
CCCACCGACGCCCTCCCTACCGTCCGCACCTTGCTAGAGCAAAAGGCCTT
GCACGAGGGGTTGGAAGATGCCTTCTTTGTCGCTGACCTTGGGGCGATTA
TTCGCCAGCACCGCAAGTGGCAACGCTGCCTTCCCCGCGTGGAGCCCTTT
TACGCCATCAAGTGCAACACCGACCCCGAGGTCTTGCGGACCCTCCTCCC
CCTCTGCGCTGGCTTCGACTGCGCGAGCAAGGGAGAGATTGAGACGATGC
TTGCCCTGGGTGTCAACCCGTCCAACATTATCTATGCCAACCCCTGCAAG
CCCCCGGAGCATGTGCGGTATGCCCGCGACCATGGTGTGCACCTTATGAC
GTTCGACAACGCCGATGAGCTGGCCAAGGTAAAGGCCATCAACCCGAATG
CCAAGATGGTCCTGCGAATCCTGACTGATGACTCGAAGTCGGTCTGTCGC
TTCGGTACCAAATTTGGAGCCCATTTGCCCGCTACCCTGCCTTTGTTGCA
GACGGCGCGCCACTTAGGGATGGATGTGGTGGGGGTTTCTTTTCACGTTG
GTTCCGGGTGCCAGGACCCCATGGCTTTTGATGACGCAGTGCGCCGAGCG
AAGAGGGTGTTCGAAGAAGGGGCACGGCTCGGGTACCACTTAACCTTATT
GGATGTCGGGGGGGGGTTCCCAGGGTCGGAAAAACGTCACTCGAGTGAGG
ATCCGGACATTCACGGAAAGGCCGAGGGAAGTGTAACATTCGAGGAGATA
GCCGCGGTGTTGGGCAAGGCGATTCAGACGCATTTCCCAGACCCGGCTGT
ACGGGTGATTGCGGAGCCGGGCCGCTTTTATGTGGCACCGGCGTTTACGC
TCGCTACCACCATTACATCACGACGAGCTGTTTTCTCTGATGCGATGACG
GCGGCGGATGACTCGAAGCTCGAAGGAAGAGCATCCGCGGCTGTGGCAGC
TGGGGGAGGGCGAGCGACATGTGCGGGTGGAATGATGACGACGACCACCA
CCACCACCACCACGGCCACGAGCGCGATGATGATTGACGAAAGCGGGACA
GAAGGAAGCGGGAAGCAGGCGGATCACCAGAAGATGGGGCTGCGCCAGGT
GCAGGTTTCGAGCGAGGAGAAGAGTTTTATGTATTATGTGAATGATGGGG
TGTATGGGTCATTCAATTGCCTGTTGTTTGACCACGCGCAGGCCTTCCCG
AAGGTGCTCGCGGCCAAGTCGCGCGCGGTCCGTCATAAGGAGAGTGTGTG
GTTGGGGGATTGGTATGAATGCTCCGTATGGGGCCCCACGTGCGATAGCA
TGGATTGCATCAGCAAGAAGACCTTGCTGCCTGAGTTGGCGATTGGGGAT
TGGTTGTATTTTGAGGAGATGGGGGCTTACACGCTCGCGGCGGCGTCGAG
GTTCAACGGCTTTGAGCTCTCCTCGGTGTTTTACACCAACACAGAGGCGA
TGCCATGAGGTGGGGGGCTATTTACGGGTTTAAGGAAGGGGGAACTGCGG
TGTTGCTTAGGTGTGCTTAGTAAGGATCTGTACATTGAGAGGTTTTTTCC
CAAGTTCCTAATTTTTTAATCTCACGTCAAATGACGGCCCTGTCCGTTTT
TTATCTGTCCGAGATATTAATAAGTCTGTTACCCTCCTTTTGATTCCATG
TCCGGCAAGATGGTGTCAGAAAGCGAGCTCACGAGAGAGAGAGTGAGTGC
TGAGTGTGTTGTGCCTGGTGTCCTTTAGTATTCGGTAAATGATATTTCCC
GTGTTCTTCCTCTCTTTTTGTTCATCCATTGGTATTTCTGCAATTTCGGG
CATGGTGTTAAAAGTCACTGTCCGGCGTCTCGTGGCCTAAATCATTTGTC
TTCTAAGGCAGAATTGGGGGGAAATAGGGGACGGAGAAAATTTAATGAAA
AATGACTCCTTCTGTGTAAGACTGGAGTGTTTTCTTTCTCCTCTTCCGCC
ATGGGGCATCACGAAGAAGAGAATGATCAACGACGCATCATGCAAGTGGG
TGGATGAAAAGATGGGTAGAGGGAAGGCAGGAAAGGGGGAGTCAGACGGG
TGTATAAGAAATAACTTAAAACTAGACAGGGGGAAGACTCAAGAAAGGAA
GAGGGCGTCGCCTGAGAAATAAAGAGATGGGAAAACAGCACCAGGGTTGG
AATTACAGATAACGAGAGGTTCGAGAGAGGGAACAAGGAAATGGTGTTGC
TATCATGAACGTTTTAATTTTCCGGGAGTGACAACTGCAGCAGATCAATG
AAGGGGGAAGATAAAGAAATAAAAGATAGGGAAAAGAGCAGCAGAAGCAG
CAACAACGGCAACAGCAGTAGTCAGGAAAAGGGTGTGGCCTGAGAGGTAA
AGCCGAGACGCACGCAGCAACAGCAAGGGAGGGATGGATGGAAGGAAATC
AAGATACATCATCCACAAAGTAATCCATATTAGAGAGGACGCCCTTCAAA
ATTGGTTGATCCGAAGAAATAAATTATAAAACACACGCA

protein sequence of jgi.p|Nanoce1779_2|583631

>mRNA_2868-protein ID=mRNA_2868-protein|Name=jgi.p|Nanoce1779_2|583631|organism=Nannochloropsis oceanica|type=polypeptide|length=530bp
MAEVQVDTHVRRSSLDLSMADELSGCGAVLLGAGPLSPRVLHPPPTDALP
TVRTLLEQKALHEGLEDAFFVADLGAIIRQHRKWQRCLPRVEPFYAIKCN
TDPEVLRTLLPLCAGFDCASKGEIETMLALGVNPSNIIYANPCKPPEHVR
YARDHGVHLMTFDNADELAKVKAINPNAKMVLRILTDDSKSVCRFGTKFG
AHLPATLPLLQTARHLGMDVVGVSFHVGSGCQDPMAFDDAVRRAKRVFEE
GARLGYHLTLLDVGGGFPGSEKRHSSEDPDIHGKAEGSVTFEEIAAVLGK
AIQTHFPDPAVRVIAEPGRFYVAPAFTLATTITSRRAVFSDAMTAADDSK
LEGRASAAVAAGGGRATCAGGMMTTTTTTTTTATSAMMIDESGTEGSGKQ
ADHQKMGLRQVQVSSEEKSFMYYVNDGVYGSFNCLLFDHAQAFPKVLAAK
SRAVRHKESVWLGDWYECSVWGPTCDSMDCISKKTLLPELAIGDWLYFEE
MGAYTLAAASRFNGFELSSVFYTNTEAMP*

mRNA from alignment at scaffold_7:122575..125313-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2868 ID=mRNA_2868|Name=jgi.p|Nanoce1779_2|583631|organism=Nannochloropsis oceanica|type=mRNA|length=2739bp|location=Sequence derived from alignment at scaffold_7:122575..125313- (Nannochloropsis oceanica)
ACAGGCAAAGGCCGGCGTCCCGCCGCCCGCATCCCTGCCCTTCCTCCGCG
TTCGCACGCCCCCACACCCACACCTCACTCTAGCCACCACCGCGCCCACC
ACCCGCTCCCTTCCACCAATGGCTGAGGTACAAGTCGACACGCACGTGCG
CCGCTCCTCCCTTGACCTTTCCATGGCTGACGAGCTTTCCGGCTGTGGCG
CTGTCCTTCTTGGCGCTGGGCCCTTGTCTCCACGTGTCCTTCACCCGCCT
CCCACCGACGCCCTCCCTACCGTCCGCACCTTGCTAGAGCAAAAGGCCTT
GCACGAGGGGTTGGAAGATGCCTTCTTTGTCGCTGACCTTGGGGCGATTA
TTCGCCAGCACCGCAAGTGGCAACGCTGCCTTCCCCGCGTGGAGCCCTTT
TACGCCATCAAGTGCAACACCGACCCCGAGGTCTTGCGGACCCTCCTCCC
CCTCTGCGCTGGCTTCGACTGCGCGAGCAAGGGAGAGATTGAGACGATGC
TTGCCCTGGGTGTCAACCCGTCCAACATTATCTATGCCAACCCCTGCAAG
CCCCCGGAGCATGTGCGGTATGCCCGCGACCATGGTGTGCACCTTATGAC
GTTCGACAACGCCGATGAGCTGGCCAAGGTAAAGGCCATCAACCCGAATG
CCAAGATGGTCCTGCGAATCCTGACTGATGACTCGAAGTCGGTCTGTCGC
TTCGGTACCAAATTTGGAGCCCATTTGCCCGCTACCCTGCCTTTGTTGCA
GACGGCGCGCCACTTAGGGATGGATGTGGTGGGGGTTTCTTTTCACGTTG
GTTCCGGGTGCCAGGACCCCATGGCTTTTGATGACGCAGTGCGCCGAGCG
AAGAGGGTGTTCGAAGAAGGGGCACGGCTCGGGTACCACTTAACCTTATT
GGATGTCGGGGGGGGGTTCCCAGGGTCGGAAAAACGTCACTCGAGTGAGG
ATCCGGACATTCACGGAAAGGCCGAGGGAAGTGTAACATTCGAGGAGATA
GCCGCGGTGTTGGGCAAGGCGATTCAGACGCATTTCCCAGACCCGGCTGT
ACGGGTGATTGCGGAGCCGGGCCGCTTTTATGTGGCACCGGCGTTTACGC
TCGCTACCACCATTACATCACGACGAGCTGTTTTCTCTGATGCGATGACG
GCGGCGGATGACTCGAAGCTCGAAGGAAGAGCATCCGCGGCTGTGGCAGC
TGGGGGAGGGCGAGCGACATGTGCGGGTGGAATGATGACGACGACCACCA
CCACCACCACCACGGCCACGAGCGCGATGATGATTGACGAAAGCGGGACA
GAAGGAAGCGGGAAGCAGGCGGATCACCAGAAGATGGGGCTGCGCCAGGT
GCAGGTTTCGAGCGAGGAGAAGAGTTTTATGTATTATGTGAATGATGGGG
TGTATGGGTCATTCAATTGCCTGTTGTTTGACCACGCGCAGGCCTTCCCG
AAGGTGCTCGCGGCCAAGTCGCGCGCGGTCCGTCATAAGGAGAGTGTGTG
GTTGGGGGATTGGTATGAATGCTCCGTATGGGGCCCCACGTGCGATAGCA
TGGATTGCATCAGCAAGAAGACCTTGCTGCCTGAGTTGGCGATTGGGGAT
TGGTTGTATTTTGAGGAGATGGGGGCTTACACGCTCGCGGCGGCGTCGAG
GTTCAACGGCTTTGAGCTCTCCTCGGTGTTTTACACCAACACAGAGGCGA
TGCCATGAGGTGGGGGGCTATTTACGGGTTTAAGGAAGGGGGAACTGCGG
TGTTGCTTAGGTGTGCTTAGTAAGGATCTGTACATTGAGAGGTTTTTTCC
CAAGTTCCTAATTTTTTAATCTCACGTCAAATGACGGCCCTGTCCGTTTT
TTATCTGTCCGAGATATTAATAAGTCTGTTACCCTCCTTTTGATTCCATG
TCCGGCAAGATGGTGTCAGAAAGCGAGCTCACGAGAGAGAGAGTGAGTGC
TGAGTGTGTTGTGCCTGGTGTCCTTTAGTATTCGGTAAATGATATTTCCC
GTGTTCTTCCTCTCTTTTTGTTCATCCATTGGTATTTCTGCAATTTCGGG
CATGGTGTTAAAAGTCACTGTCCGGCGTCTCGTGGCCTAAATCATTTGTC
TTCTAAGGCAGAATTGGGGGGAAATAGGGGACGGAGAAAATTTAATGAAA
AATGACTCCTTCTGTGTAAGACTGGAGTGTTTTCTTTCTCCTCTTCCGCC
ATGGGGCATCACGAAGAAGAGAATGATCAACGACGCATCATGCAAGTGGG
TGGATGAAAAGATGGGTAGAGGGAAGGCAGGAAAGGGGGAGTCAGACGGG
TGTATAAGAAATAACTTAAAACTAGACAGGGGGAAGACTCAAGAAAGGAA
GAGGGCGTCGCCTGAGAAATAAAGAGATGGGAAAACAGCACCAGGGTTGG
AATTACAGATAACGAGAGGTTCGAGAGAGGGAACAAGGAAATGGTGTTGC
TATCATGAACGTTTTAATTTTCCGGGAGTGACAACTGCAGCAGATCAATG
AAGGGGGAAGATAAAGAAATAAAAGATAGGGAAAAGAGCAGCAGAAGCAG
CAACAACGGCAACAGCAGTAGTCAGGAAAAGGGTGTGGCCTGAGAGGTAA
AGCCGAGACGCACGCAGCAACAGCAAGGGAGGGATGGATGGAAGGAAATC
AAGATACATCATCCACAAAGTAATCCATATTAGAGAGGACGCCCTTCAAA
ATTGGTTGATCCGAAGAAATAAATTATAAAACACACGCA

Coding sequence (CDS) from alignment at scaffold_7:122575..125313-

>mRNA_2868 ID=mRNA_2868|Name=jgi.p|Nanoce1779_2|583631|organism=Nannochloropsis oceanica|type=CDS|length=1590bp|location=Sequence derived from alignment at scaffold_7:122575..125313- (Nannochloropsis oceanica)
ATGGCTGAGGTACAAGTCGACACGCACGTGCGCCGCTCCTCCCTTGACCT
TTCCATGGCTGACGAGCTTTCCGGCTGTGGCGCTGTCCTTCTTGGCGCTG
GGCCCTTGTCTCCACGTGTCCTTCACCCGCCTCCCACCGACGCCCTCCCT
ACCGTCCGCACCTTGCTAGAGCAAAAGGCCTTGCACGAGGGGTTGGAAGA
TGCCTTCTTTGTCGCTGACCTTGGGGCGATTATTCGCCAGCACCGCAAGT
GGCAACGCTGCCTTCCCCGCGTGGAGCCCTTTTACGCCATCAAGTGCAAC
ACCGACCCCGAGGTCTTGCGGACCCTCCTCCCCCTCTGCGCTGGCTTCGA
CTGCGCGAGCAAGGGAGAGATTGAGACGATGCTTGCCCTGGGTGTCAACC
CGTCCAACATTATCTATGCCAACCCCTGCAAGCCCCCGGAGCATGTGCGG
TATGCCCGCGACCATGGTGTGCACCTTATGACGTTCGACAACGCCGATGA
GCTGGCCAAGGTAAAGGCCATCAACCCGAATGCCAAGATGGTCCTGCGAA
TCCTGACTGATGACTCGAAGTCGGTCTGTCGCTTCGGTACCAAATTTGGA
GCCCATTTGCCCGCTACCCTGCCTTTGTTGCAGACGGCGCGCCACTTAGG
GATGGATGTGGTGGGGGTTTCTTTTCACGTTGGTTCCGGGTGCCAGGACC
CCATGGCTTTTGATGACGCAGTGCGCCGAGCGAAGAGGGTGTTCGAAGAA
GGGGCACGGCTCGGGTACCACTTAACCTTATTGGATGTCGGGGGGGGGTT
CCCAGGGTCGGAAAAACGTCACTCGAGTGAGGATCCGGACATTCACGGAA
AGGCCGAGGGAAGTGTAACATTCGAGGAGATAGCCGCGGTGTTGGGCAAG
GCGATTCAGACGCATTTCCCAGACCCGGCTGTACGGGTGATTGCGGAGCC
GGGCCGCTTTTATGTGGCACCGGCGTTTACGCTCGCTACCACCATTACAT
CACGACGAGCTGTTTTCTCTGATGCGATGACGGCGGCGGATGACTCGAAG
CTCGAAGGAAGAGCATCCGCGGCTGTGGCAGCTGGGGGAGGGCGAGCGAC
ATGTGCGGGTGGAATGATGACGACGACCACCACCACCACCACCACGGCCA
CGAGCGCGATGATGATTGACGAAAGCGGGACAGAAGGAAGCGGGAAGCAG
GCGGATCACCAGAAGATGGGGCTGCGCCAGGTGCAGGTTTCGAGCGAGGA
GAAGAGTTTTATGTATTATGTGAATGATGGGGTGTATGGGTCATTCAATT
GCCTGTTGTTTGACCACGCGCAGGCCTTCCCGAAGGTGCTCGCGGCCAAG
TCGCGCGCGGTCCGTCATAAGGAGAGTGTGTGGTTGGGGGATTGGTATGA
ATGCTCCGTATGGGGCCCCACGTGCGATAGCATGGATTGCATCAGCAAGA
AGACCTTGCTGCCTGAGTTGGCGATTGGGGATTGGTTGTATTTTGAGGAG
ATGGGGGCTTACACGCTCGCGGCGGCGTCGAGGTTCAACGGCTTTGAGCT
CTCCTCGGTGTTTTACACCAACACAGAGGCGATGCCATGA

Synonyms

Publications