jgi.p|Nanoce1779_2|583630, mRNA_2867 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583630
Unique NamemRNA_2867
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length914
Alignment locationscaffold_7:121658..122571 +

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Properties
Property NameValue
TranscriptId583716
TrackFilteredModels2
ProteinId583630
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:121658..122571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583630gene_2867Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583630mRNA_2867-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2867CDS_2867Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2867 ID=mRNA_2867|Name=jgi.p|Nanoce1779_2|583630|organism=Nannochloropsis oceanica|type=mRNA|length=914bp
AGCTGTACATACATTAGGTACCAGCGGGCTGTGGCCTTCATTCATTTTTG
CTCCTCTCGACCACACATCCACCGTCATCCCGCCATCCCCGCCCCTCTGG
TCCGTTGCGCCTCTTCCTCCGCCATCCTTATCTACACATGCGTCTTCCCC
CCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGCCTGGAACATGGTG
CTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGCTATCCCGGACACG
GGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCCGCGATTGCCGAGC
AAAAGGAGCACATGCATCGACAGGACAGACAGCAGCAAGGGAGGGGAGGA
TTGACCGTTAAAAGTGACATATCAACATCACCTGTTGTGGTGGTGGCGGG
GGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCGCATCTGGAGTCCA
GACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGATTGGAATGATGGA
TCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTATGGGAGAAGAATT
GTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTTGAGGAAGGAGTAT
TAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGCCGCTGCTGCTTCT
TCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTGAGGAGAAGGGGAA
TGGAAAGAAAACGGTAGGAATGGAGCAATCAGCGCAATAATAAAAGCCAT
AAGGTGAGGATAGAATCCCAGCCGCGAAAATTGACTTGTGAAATAAATGA
AAATAAACGCAATTACGCAGTTCGTTAACATAACACTAGACACCTACATA
TCACCATCAACCCCCCCCCCCCTTTCTTTCCCTCACAAAAAAAAGAAATA
TCTCTGTGTGTGTG
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protein sequence of jgi.p|Nanoce1779_2|583630

>mRNA_2867-protein ID=mRNA_2867-protein|Name=jgi.p|Nanoce1779_2|583630|organism=Nannochloropsis oceanica|type=polypeptide|length=201bp
MRLPPRTAKRFGWDWWAWNMVLAATPATILWYGLSRTREGMKGEMGQLKA
AIAEQKEHMHRQDRQQQGRGGLTVKSDISTSPVVVVAGVVKGGTPEERIA
HLESRLAVLEGHLRGRDWNDGSESSNSSVGSSAMGEELLSGVKRRMLGQF
EEGVLEALTKIRRGGSAAAASSTAAASVAAAAAEEKGNGKKTVGMEQSAQ
*
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mRNA from alignment at scaffold_7:121658..122571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2867 ID=mRNA_2867|Name=jgi.p|Nanoce1779_2|583630|organism=Nannochloropsis oceanica|type=mRNA|length=914bp|location=Sequence derived from alignment at scaffold_7:121658..122571+ (Nannochloropsis oceanica)
AGCTGTACATACATTAGGTACCAGCGGGCTGTGGCCTTCATTCATTTTTG
CTCCTCTCGACCACACATCCACCGTCATCCCGCCATCCCCGCCCCTCTGG
TCCGTTGCGCCTCTTCCTCCGCCATCCTTATCTACACATGCGTCTTCCCC
CCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGCCTGGAACATGGTG
CTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGCTATCCCGGACACG
GGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCCGCGATTGCCGAGC
AAAAGGAGCACATGCATCGACAGGACAGACAGCAGCAAGGGAGGGGAGGA
TTGACCGTTAAAAGTGACATATCAACATCACCTGTTGTGGTGGTGGCGGG
GGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCGCATCTGGAGTCCA
GACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGATTGGAATGATGGA
TCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTATGGGAGAAGAATT
GTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTTGAGGAAGGAGTAT
TAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGCCGCTGCTGCTTCT
TCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTGAGGAGAAGGGGAA
TGGAAAGAAAACGGTAGGAATGGAGCAATCAGCGCAATAATAAAAGCCAT
AAGGTGAGGATAGAATCCCAGCCGCGAAAATTGACTTGTGAAATAAATGA
AAATAAACGCAATTACGCAGTTCGTTAACATAACACTAGACACCTACATA
TCACCATCAACCCCCCCCCCCCTTTCTTTCCCTCACAAAAAAAAGAAATA
TCTCTGTGTGTGTG
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Coding sequence (CDS) from alignment at scaffold_7:121658..122571+

>mRNA_2867 ID=mRNA_2867|Name=jgi.p|Nanoce1779_2|583630|organism=Nannochloropsis oceanica|type=CDS|length=603bp|location=Sequence derived from alignment at scaffold_7:121658..122571+ (Nannochloropsis oceanica)
ATGCGTCTTCCCCCCCGCACCGCCAAGCGCTTTGGGTGGGACTGGTGGGC
CTGGAACATGGTGCTGGCCGCCACGCCGGCCACCATTTTATGGTACGGGC
TATCCCGGACACGGGAGGGGATGAAGGGAGAGATGGGGCAGCTCAAGGCC
GCGATTGCCGAGCAAAAGGAGCACATGCATCGACAGGACAGACAGCAGCA
AGGGAGGGGAGGATTGACCGTTAAAAGTGACATATCAACATCACCTGTTG
TGGTGGTGGCGGGGGTTGTGAAAGGAGGGACGCCTGAGGAAAGAATAGCG
CATCTGGAGTCCAGACTAGCTGTACTGGAGGGGCATTTAAGGGGAAGAGA
TTGGAATGATGGATCAGAAAGTAGTAACAGCAGTGTTGGTAGCAGTGCTA
TGGGAGAAGAATTGTTGTCGGGCGTGAAGAGGCGGATGTTAGGTCAATTT
GAGGAAGGAGTATTAGAGGCCTTAACAAAGATAAGACGCGGGGGTTCTGC
CGCTGCTGCTTCTTCTACTGCTGCTGCAAGTGTTGCTGCTGCCGCTGCTG
AGGAGAAGGGGAATGGAAAGAAAACGGTAGGAATGGAGCAATCAGCGCAA
TAA
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Synonyms
Publications