jgi.p|Nanoce1779_2|583621, mRNA_2865 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583621
Unique NamemRNA_2865
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length987
Alignment locationscaffold_7:116644..117832 +

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Properties
Property NameValue
TranscriptId583707
TrackFilteredModels2
ProteinId583621
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:116644..117832 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583621gene_2865Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583621mRNA_2865-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2865CDS_2865Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2865 ID=mRNA_2865|Name=jgi.p|Nanoce1779_2|583621|organism=Nannochloropsis oceanica|type=mRNA|length=987bp
ACAGAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGCCGAG
GCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACAACAC
GGCCGACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAGATCA
AGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGCCACC
TACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCAAGGC
GCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAGGGCC
GCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACACCCTC
GAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGGTGGA
CAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGTTCTG
CCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCGTGTT
AACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCTTTAG
GAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAACGCCG
CTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGTGGAG
CGTGTCGCCAAGGCGAACAGATAAACAATCAGTGGGAGGAAGGGAGAGGG
AGGAAGGGTACATGGACGGGAAGAAGGAAGGGGTGTGATGCGCAGGCTGT
TGATTCGAGGAAGAGCAGCAGACTGGAGGGATGGAGGAAAGGAGGGAGAG
AGAGAGAGAGGGAGCAGGTGTGAAAGGAGAAGATGGTTTATCTACGATTT
CTTTCGTATTTCGGTTCGTCTCTTAATGGTTCTCCTCCATCTCCTTTCAT
GGGGGAGGGAGGAAGGGAGGGAAGGAGGGGGAGAGGGAAGATGGAGGAAT
CATAGGCATCCAACCTGGACGCAACTCTCTTGTGGGG
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protein sequence of jgi.p|Nanoce1779_2|583621

>mRNA_2865-protein ID=mRNA_2865-protein|Name=jgi.p|Nanoce1779_2|583621|organism=Nannochloropsis oceanica|type=polypeptide|length=220bp
MADEIVPFDEAEAAVPFETDMAVGFEDNTADIKLFGKWSLSDVEIKDLSL
EDYIGVNGKCATYLPHTAGRYQKKRFRKAQCPVVERLANSLMRKGRNSGK
KLMANRIVKHTLEIIHLLTDQNPVQVVVDSIINAGPREDSTRVGSAGVVR
RQAVDMSPFRRVNQAIYLITTGARESSFRNIKTIAETLADEIINAAKGSS
NSYAIKKKDEVERVAKANR*
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mRNA from alignment at scaffold_7:116644..117832+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2865 ID=mRNA_2865|Name=jgi.p|Nanoce1779_2|583621|organism=Nannochloropsis oceanica|type=mRNA|length=1189bp|location=Sequence derived from alignment at scaffold_7:116644..117832+ (Nannochloropsis oceanica)
ACAGAGTAGTCACTATGGCTGACGAGATTGTTCCTTTCGACGAGGCCGAG
GCCGCCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACAACAC
GGCCGACATCAAGCTCTTCGGCAAATGGTACGTGGATGACGATTAAGCTT
TCCCGCAGCGCCCAATCCTTCTTGCATCCTCCCGTGTTCCATCTATGTAA
CAAGCCTTTGAGCATGTGGCCGTATTGTACTCGAGCTAGCTGGTTGCGCC
GCAGCCAAAGCTTTCGCTTCTATTGCTTGTAATTCCGCCTCGTTCTCATC
CCAATCCATGCCCATTCCTCCCTCTGCAGGAGCCTGTCCGACGTCGAGAT
CAAGGACTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGCCA
CCTACCTCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCAAG
GCGCAGTGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAGGG
CCGCAACAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACACCC
TCGAGATTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGGTG
GACAGCATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGTTC
TGCCGGTGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCGTG
TTAACCAGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCTTT
AGGAACATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAACGC
CGCTAAGGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGTGG
AGCGTGTCGCCAAGGCGAACAGATAAACAATCAGTGGGAGGAAGGGAGAG
GGAGGAAGGGTACATGGACGGGAAGAAGGAAGGGGTGTGATGCGCAGGCT
GTTGATTCGAGGAAGAGCAGCAGACTGGAGGGATGGAGGAAAGGAGGGAG
AGAGAGAGAGAGGGAGCAGGTGTGAAAGGAGAAGATGGTTTATCTACGAT
TTCTTTCGTATTTCGGTTCGTCTCTTAATGGTTCTCCTCCATCTCCTTTC
ATGGGGGAGGGAGGAAGGGAGGGAAGGAGGGGGAGAGGGAAGATGGAGGA
ATCATAGGCATCCAACCTGGACGCAACTCTCTTGTGGGG
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Coding sequence (CDS) from alignment at scaffold_7:116644..117832+

>mRNA_2865 ID=mRNA_2865|Name=jgi.p|Nanoce1779_2|583621|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at scaffold_7:116644..117832+ (Nannochloropsis oceanica)
ATGGCTGACGAGATTGTTCCTTTCGACGAGGCCGAGGCCGCCGTGCCCTT
CGAAACCGACATGGCTGTGGGGTTCGAGGACAACACGGCCGACATCAAGC
TCTTCGGCAAATGGAGCCTGTCCGACGTCGAGATCAAGGACTTGTCCCTG
GAGGACTACATTGGCGTGAATGGCAAGTGCGCCACCTACCTCCCTCACAC
GGCGGGCCGCTACCAAAAGAAGCGCTTTCGCAAGGCGCAGTGCCCCGTGG
TGGAACGGTTGGCGAACTCGCTTATGCGCAAGGGCCGCAACAGCGGGAAA
AAGCTCATGGCTAACCGGATCGTGAAGCACACCCTCGAGATTATTCACCT
CCTGACGGATCAGAACCCGGTGCAGGTGGTGGTGGACAGCATTATCAATG
CCGGTCCTCGGGAGGACTCGACCCGGGTGGGTTCTGCCGGTGTGGTGCGA
CGACAAGCCGTTGATATGTCTCCCTTCCGCCGTGTTAACCAGGCCATCTA
CCTGATCACCACGGGCGCGCGCGAGTCGAGCTTTAGGAACATTAAGACGA
TTGCCGAGACGTTGGCGGATGAGATCATTAACGCCGCTAAGGGGAGCTCC
AACAGTTATGCCATTAAGAAGAAGGACGAGGTGGAGCGTGTCGCCAAGGC
GAACAGATAAATGGCTGACGAGATTGTTCCTTTCGACGAGGCCGAGGCCG
CCGTGCCCTTCGAAACCGACATGGCTGTGGGGTTCGAGGACAACACGGCC
GACATCAAGCTCTTCGGCAAATGGAGCCTGTCCGACGTCGAGATCAAGGA
CTTGTCCCTGGAGGACTACATTGGCGTGAATGGCAAGTGCGCCACCTACC
TCCCTCACACGGCGGGCCGCTACCAAAAGAAGCGCTTTCGCAAGGCGCAG
TGCCCCGTGGTGGAACGGTTGGCGAACTCGCTTATGCGCAAGGGCCGCAA
CAGCGGGAAAAAGCTCATGGCTAACCGGATCGTGAAGCACACCCTCGAGA
TTATTCACCTCCTGACGGATCAGAACCCGGTGCAGGTGGTGGTGGACAGC
ATTATCAATGCCGGTCCTCGGGAGGACTCGACCCGGGTGGGTTCTGCCGG
TGTGGTGCGACGACAAGCCGTTGATATGTCTCCCTTCCGCCGTGTTAACC
AGGCCATCTACCTGATCACCACGGGCGCGCGCGAGTCGAGCTTTAGGAAC
ATTAAGACGATTGCCGAGACGTTGGCGGATGAGATCATTAACGCCGCTAA
GGGGAGCTCCAACAGTTATGCCATTAAGAAGAAGGACGAGGTGGAGCGTG
TCGCCAAGGCGAACAGATAA
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Synonyms
Publications