jgi.p|Nanoce1779_2|669717, mRNA_2863 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669717
Unique Name	mRNA_2863
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2214
Alignment location	scaffold_7:110642..112855 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669803
Track	FilteredModels2
ProteinId	669717

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:110642..112855 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669717	gene_2863	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669717	mRNA_2863-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2863	CDS_2863	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:110642..112855+
coding sequence from alignment at scaffold_7:110642..112855+

mRNA sequence

>mRNA_2863 ID=mRNA_2863|Name=jgi.p|Nanoce1779_2|669717|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
GGAACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCG
ATGGTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGTCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGT
CTCATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTG
CTTCAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGA
GCGCAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTAT
CGCCCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGG
AAGCAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTG
GCCAAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGC
GCTCAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTG
AGGCCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTG
CGACAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGT
TATATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGC
AGCTACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAA
GAAAAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATA
TCAGGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGT
TGAAGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAG
GCGTTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGC
TGCATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCC
CTTCTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTCATCCTC
AACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAACGTCTTA
AAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAGCGTTAT
GAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATTGCCGTT
GCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTATTGACAG
CACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTTATTCAT
GTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGGCAGGAG
GGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGGGGACCC
AATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGGGACATT
GGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATTTGAGGA
AGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCAGCCCCC
TGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGGCTCTTC
TTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTAGAGCCA
CTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTTGGCGCT
GTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAGTAGCAG
CGTGCGGGGCGTGGACGTGGAGCCCTGGCGTCGCAAATACGGCCGTCCAG
CGGCTCGGAATTGA

protein sequence of jgi.p|Nanoce1779_2|669717

>mRNA_2863-protein ID=mRNA_2863-protein|Name=jgi.p|Nanoce1779_2|669717|organism=Nannochloropsis oceanica|type=polypeptide|length=738bp
MPTQEDVEAIMAHAESLGMDPIEDSAFQWLAEESLKAPLPPGWEIITGGE
DGEDGAVPFYYNEALNHSTWEHPLDEVYRARFQKLKTAATASVFAEAAAR
AEQSVDKSRENEEEEEEELVSLEEIREDVEALSDGEVDETRKQQQQQQQQ
QSPIAATQSALSASVPVSFPAPSSPPPTAPSSSASSTSNVAESTTLATLR
AQLTSMKQERTSLQDVIARLQGRLERERMDWEEEANRRVMMKEKEVQVRV
AKAVEAAALEWQEKVGALKDELEKATRTSSSSTEATASKHQEDSQQLQQL
RQKNEEHSKRMAEMADVISIYRRKEEEAQAEAEQLRQSLRDKEKEITFGK
EKEEQARRTAREQSKAYQEMVRQGEEKYRILQGLKTKEQETREAAETALE
ALRVSINSSITSSPEPAASTLSPFHPSYPSRAIPSPTTTIPHLPASSSSS
SSSSSSSSSSSSSPSSSTTRITALELSLEVERLKVHKATAHERLYLAQRY
EQELQKLKDEISLRLPLLAAAAVKHAQDAAVLTALAPTPAAAVAVVTKEK
EEEEEEEEDDGPENLFMSPPAPVSPVPRHMLAGGGENYSAALTRRRGRGP
NSSTSRSGNINSGKGTLAMRLLQEWRRESQDLRKEIAELRSAGFYQIPAP
CSTSSFSSCPFSSSGSSLPPPFYFTARPILSRATAAAATPSPCPPPDFGA
VVANVIRKGSDRSRSSSVRGVDVEPWRRKYGRPAARN*

mRNA from alignment at scaffold_7:110642..112855+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2863 ID=mRNA_2863|Name=jgi.p|Nanoce1779_2|669717|organism=Nannochloropsis oceanica|type=mRNA|length=2214bp|location=Sequence derived from alignment at scaffold_7:110642..112855+ (Nannochloropsis oceanica)
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
GGAACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCG
ATGGTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGTCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGT
CTCATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTG
CTTCAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGA
GCGCAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTAT
CGCCCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGG
AAGCAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTG
GCCAAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGC
GCTCAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTG
AGGCCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTG
CGACAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGT
TATATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGC
AGCTACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAA
GAAAAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATA
TCAGGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGT
TGAAGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAG
GCGTTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGC
TGCATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCC
CTTCTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTCATCCTC
AACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAACGTCTTA
AAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAGCGTTAT
GAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATTGCCGTT
GCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTATTGACAG
CACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTTATTCAT
GTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGGCAGGAG
GGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGGGGACCC
AATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGGGACATT
GGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATTTGAGGA
AGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCAGCCCCC
TGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGGCTCTTC
TTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTAGAGCCA
CTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTTGGCGCT
GTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAGTAGCAG
CGTGCGGGGCGTGGACGTGGAGCCCTGGCGTCGCAAATACGGCCGTCCAG
CGGCTCGGAATTGA

Coding sequence (CDS) from alignment at scaffold_7:110642..112855+

>mRNA_2863 ID=mRNA_2863|Name=jgi.p|Nanoce1779_2|669717|organism=Nannochloropsis oceanica|type=CDS|length=2214bp|location=Sequence derived from alignment at scaffold_7:110642..112855+ (Nannochloropsis oceanica)
ATGCCCACGCAGGAAGACGTTGAGGCGATCATGGCACATGCCGAGTCCCT
AGGAATGGACCCTATCGAGGACTCAGCGTTCCAGTGGCTGGCTGAGGAGT
CTCTCAAAGCGCCCCTGCCGCCAGGTTGGGAAATTATCACTGGTGGGGAA
GACGGAGAGGACGGCGCTGTCCCTTTTTATTACAACGAAGCCTTAAATCA
TTCCACGTGGGAACATCCTCTCGATGAGGTCTATCGGGCCAGGTTTCAAA
AGCTTAAAACGGCGGCGACAGCATCTGTTTTTGCAGAAGCTGCAGCGAGG
GCAGAGCAGAGTGTAGACAAGAGTCGGGAGAATGAGGAGGAGGAGGAGGA
GGAACTTGTCTCATTGGAGGAGATCAGGGAAGATGTTGAGGCTTTATCCG
ATGGTGAAGTAGACGAAACGAGGAAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGTCACCTATAGCAGCAACACAGTCAGCGTTGTCAGCGTCTGTCCCCGT
CTCATTCCCTGCGCCTTCTTCTCCTCCTCCCACTGCGCCTTCGTCATCTG
CTTCAAGCACCTCAAACGTTGCTGAATCTACCACCCTTGCTACGCTACGA
GCGCAATTGACCTCCATGAAGCAAGAACGCACCTCCCTCCAGGATGTTAT
CGCCCGGCTCCAAGGTCGGTTGGAGAGGGAACGAATGGATTGGGAGGAGG
AAGCAAATCGTCGTGTCATGATGAAGGAGAAAGAGGTACAAGTCCGCGTG
GCCAAGGCGGTGGAGGCTGCAGCCTTGGAATGGCAAGAGAAGGTGGGCGC
GCTCAAGGATGAGCTTGAAAAGGCTACCAGAACAAGCAGCAGCAGCACTG
AGGCCACCGCCAGCAAGCATCAGGAGGATAGTCAGCAGCTGCAACAACTG
CGACAGAAGAATGAAGAACACAGCAAGAGGATGGCCGAAATGGCGGACGT
TATATCCATTTATCGTCGAAAGGAGGAAGAGGCACAAGCAGAAGCAGAGC
AGCTACGACAATCCTTGCGAGACAAGGAGAAAGAGATCACATTCGGAAAA
GAAAAGGAGGAGCAAGCTCGCCGGACTGCGAGAGAGCAGAGCAAGGCATA
TCAGGAGATGGTGCGACAAGGGGAGGAGAAATATCGGATCCTGCAGGGGT
TGAAGACCAAGGAGCAGGAGACACGCGAAGCTGCTGAGACTGCGCTTGAG
GCGTTACGTGTCAGCATCAATTCTTCTATCACCTCTTCTCCTGAGCCCGC
TGCATCCACTCTCTCTCCTTTCCACCCCTCATACCCATCTAGAGCCATCC
CTTCTCCAACAACCACAATTCCGCATTTGCCTGCTTCCTCCTCCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTCATCCTC
AACTACTCGTATTACCGCACTGGAACTCTCCTTGGAAGTGGAACGTCTTA
AAGTGCACAAAGCAACTGCGCACGAACGTCTCTACCTAGCACAGCGTTAT
GAGCAAGAGCTACAAAAACTTAAAGACGAGATATCCCTTCGATTGCCGTT
GCTGGCGGCGGCGGCCGTTAAACACGCGCAGGATGCAGCTGTATTGACAG
CACTGGCACCCACACCAGCGGCAGCAGTAGCAGTAGTGACAAAGGAGAAG
GAGGAGGAGGAGGAGGAGGAGGAGGACGATGGACCGGAGAATTTATTCAT
GTCTCCACCGGCACCTGTGTCGCCTGTGCCGCGACACATGTTGGCAGGAG
GGGGAGAAAATTACAGTGCAGCATTGACGAGGAGACGAGGCAGGGGACCC
AATAGCAGCACTAGCAGAAGTGGGAACATCAACAGTGGAAAGGGGACATT
GGCCATGCGGTTGCTGCAGGAATGGCGGCGCGAAAGCCAGGATTTGAGGA
AGGAGATTGCGGAGCTGCGGAGTGCGGGGTTCTACCAGATCCCAGCCCCC
TGTTCTACTTCCTCCTTCTCCTCATGCCCCTTTTCCTCTTCAGGCTCTTC
TTTACCACCTCCGTTTTATTTCACTGCGCGACCGATCCTATCTAGAGCCA
CTGCTGCTGCTGCTACGCCTTCGCCTTGTCCACCTCCTGACTTTGGCGCT
GTTGTTGCAAATGTGATAAGAAAAGGTAGTGACAGAAGCAGGAGTAGCAG
CGTGCGGGGCGTGGACGTGGAGCCCTGGCGTCGCAAATACGGCCGTCCAG
CGGCTCGGAATTGA

Synonyms

Publications