jgi.p|Nanoce1779_2|583605, mRNA_2862 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583605
Unique Name	mRNA_2862
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	904
Alignment location	scaffold_7:108622..110310 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583691
Track	FilteredModels2
ProteinId	583605

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:108622..110310 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583605	gene_2862	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583605	mRNA_2862-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2862	CDS_2862	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:108622..110310-
coding sequence from alignment at scaffold_7:108622..110310-

mRNA sequence

>mRNA_2862 ID=mRNA_2862|Name=jgi.p|Nanoce1779_2|583605|organism=Nannochloropsis oceanica|type=mRNA|length=904bp
CAGAGATGGCCGCCGCCGCGCTTCGAGAAGCTTCGCCTGGAATCAAGGTG
GACACAGCGCTCCATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTA
TGTGCGGTGGAGGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAG
CATCCGCACCCGAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTA
CAGGGGTACACGAATCCGGTGCGACGTCCTTGCCATCCACACACTTCGCC
TCTGTGTCTCCAATAGATACCACGGCCTGACCCACCTACAGCAAATGTTT
GGGGAAATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGC
ACTCGCCATCTTTTTCCACGATCTGATTTATGACCCTGGCAGCAGCACGA
ATGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACA
AGATTACCGATGAAAGACATCAAAAAAGTTCACACCTATATCCTGGCAAC
CAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAAGGACGAGG
ACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGCAGCCCCGA
CAGGTGTACATGATGTACGCCGGTGCCATTCGCTCCGAGTACAAACATGT
ACCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGT
TAGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCAGATTTCTATAGG
CAGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGGGGAGATTCAGAT
GTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGGGGGAGAAGGAGG
GGGAGGGAGGGAAGGGGGAGATCTAGTAGTGCATGGCATTCGTCGCAAAA
AGGC

protein sequence of jgi.p|Nanoce1779_2|583605

>mRNA_2862-protein ID=mRNA_2862-protein|Name=jgi.p|Nanoce1779_2|583605|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSRSRPLWRWACMCGGGVHWMETTPGRREHPHPKRRSSTGGGKRLYRGTR
IRCDVLAIHTLRLCVSNRYHGLTHLQQMFGEMDRHAGRLARPDLVALAIF
FHDLIYDPGSSTNEEDSAERFHLFAQEATRLPMKDIKKVHTYILATKTHK
PAPPPIEDDKDEDLLLFLDIDMSILGQPRQVYMMYAGAIRSEYKHVPRLT
YLTKRAEVLSSMLGEGGGGRWIYASDFYRQELEEQARDNLLGEIQMLREG
VIPYEEQKGEKEGEGGKGEI*

mRNA from alignment at scaffold_7:108622..110310-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2862 ID=mRNA_2862|Name=jgi.p|Nanoce1779_2|583605|organism=Nannochloropsis oceanica|type=mRNA|length=1689bp|location=Sequence derived from alignment at scaffold_7:108622..110310- (Nannochloropsis oceanica)
CAGAGATGGCCGCCGCCGCGCTTCGAGAAGCTTCGCCTGGAATCAAGGTG
GACACAGCGCTCCATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTA
TGTGCGGTGGAGGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAG
CATCCGCACCCGAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTA
CAGGGGTACACGAATCCGGTGCGACGGTGAGTGTGGAGAGGCAATAGATA
ACGTGCGACACAAAATTATGCCACTCTCAATCGTCCCCTTCCTCAGTCCT
TGCCATCCACACACTTCGCCTCTGTGTCTCCAATAGATACCACGGCCTGA
CCCACCTACAGCAAATGTTTGGGGAAATGGACCGGCACGCCGGCAGACTG
GCCCGCCCTGACCTGGTGGCACTCGCCATCTTTTTCCACGAGTACGTACA
TGCGTAGGTAGATATGTTCGAGAGCTGCACGGGGAGGTAATGACCCTTCA
TAGACCACTAACTCCTCTTCTTTCCACCTCTACGAACCCATCAGTCTGAT
TTATGACCCTGGCAGCAGCACGAATGAGGAGGACAGTGCGGAGCGTTTTC
ATCTTTTTGCGCAGGAGGCCACAAGATTAGTACGTTTGGGCAGACACTAA
GAATGGGGGGCTACGGAGAATGGAGAAGCAACGCATGCACACCTTTAAGA
TGTTTCGCCCTCCCTTCTTCTCCGCCTTTTCACCACTCACAGCCGATGAA
AGACATCAAAAAAGTTCACACCTATATCCTGGCAACCAAAACCCACAAGC
CCGCCCCCCCTCCCATCGAGGACGACAAGGACGAGGACCTCCTCCTCTTC
CTCGATATCGATATGAGCATTCTCGGGCAGCCCCGACAGGTGTACATGAT
GTAAGAAGGAAAGGAGGGAGGGCAGGAGGATAATTAGACAAAAAACGACG
GTCATGATGTTTTAATTCTTCTATTTCTGATAGTAAATTAGCCCCTTCTT
TTCCTCCCCTAAAAGAGGAGGGAGGACGGTGCCTGCATGATTTCAGCATA
GCGCAACCTTCGCCGGTAGCTCCTTCTGAACCGTCGTTTGAGCACGAAAT
AGTTATTATAGCGAGTAATTGGTTAAAAGGGGGGGGGGGGGGGGGAGAGG
GAGGGAGGGAAGGGAAGGATGGAAGGAGGGAATGAAGGGTCTCAAGTTGA
ATTTCATTTCCTAAGTGGCTACGAGCGGTGGAGGAAGTAGGTTTGACGCC
TCACCCCTCCTTCTTTTTCCCTCTTTTTGCAGTATTACTGTACCTTGTCT
TTCCTGGTGTCTCCCTACTTTGTTTCTAAGCTTCCTACTTGACGTGCTCG
GCTCTCCTTCTCCTCCCCTCCTTTCCTCCCTTCCTCCCCCTTTTGAAAGG
TACGCCGGTGCCATTCGCTCCGAGTACAAACATGTACCTCGCCTCACCTA
CCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTTAGGGGAAGGAGGGG
GAGGAAGATGGATTTATGCGTCAGATTTCTATAGGCAGGAATTGGAGGAG
CAGGCGAGGGACAATCTTCTGGGGGAGATTCAGATGTTGCGGGAAGGGGT
CATTCCCTATGAGGAGCAGAAGGGGGAGAAGGAGGGGGAGGGAGGGAAGG
GGGAGATCTAGTAGTGCATGGCATTCGTCGCAAAAAGGC

Coding sequence (CDS) from alignment at scaffold_7:108622..110310-

>mRNA_2862 ID=mRNA_2862|Name=jgi.p|Nanoce1779_2|583605|organism=Nannochloropsis oceanica|type=CDS|length=4065bp|location=Sequence derived from alignment at scaffold_7:108622..110310- (Nannochloropsis oceanica)
GTACGCCGGTGCCATTCGCTCCGAGTACAAACATGTACCTCGCCTCACCT
ACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTTAGGGGAAGGAGGG
GGAGGAAGATGGATTTATGCGTCAGATTTCTATAGGCAGGAATTGGAGGA
GCAGGCGAGGGACAATCTTCTGGGGGAGATTCAGATGTTGCGGGAAGGGG
TCATTCCCTATGAGGAGCAGAAGGGGGAGAAGGAGGGGGAGGGAGGGAAG
GGGGAGATCTAGCCGATGAAAGACATCAAAAAAGTTCACACCTATATCCT
GGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAAGG
ACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGCAG
CCCCGACAGGTGTACATGATTCTGATTTATGACCCTGGCAGCAGCACGAA
TGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAA
GATTATCCTTGCCATCCACACACTTCGCCTCTGTGTCTCCAATAGATACC
ACGGCCTGACCCACCTACAGCAAATGTTTGGGGAAATGGACCGGCACGCC
GGCAGACTGGCCCGCCCTGACCTGGTGGCACTCGCCATCTTTTTCCACGA
ATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGG
CGTGCATTGGATGGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGA
AGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGA
ATCCGGTGCGACGGTACGCCGGTGCCATTCGCTCCGAGTACAAACATGTA
CCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTT
AGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCAGATTTCTATAGGC
AGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGGGGAGATTCAGATG
TTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGGGGGAGAAGGAGGG
GGAGGGAGGGAAGGGGGAGATCTAGCCGATGAAAGACATCAAAAAAGTTC
ACACCTATATCCTGGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATC
GAGGACGACAAGGACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAG
CATTCTCGGGCAGCCCCGACAGGTGTACATGATTCTGATTTATGACCCTG
GCAGCAGCACGAATGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCG
CAGGAGGCCACAAGATTATCCTTGCCATCCACACACTTCGCCTCTGTGTC
TCCAATAGATACCACGGCCTGACCCACCTACAGCAAATGTTTGGGGAAAT
GGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCGCCA
TCTTTTTCCACGAATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTA
TGTGCGGTGGAGGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAG
CATCCGCACCCGAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTA
CAGGGGTACACGAATCCGGTGCGACGGTACGCCGGTGCCATTCGCTCCGA
GTACAAACATGTACCTCGCCTCACCTACCTCACCAAACGCGCGGAAGTAC
TCTCCTCCATGTTAGGGGAAGGAGGGGGAGGAAGATGGATTTATGCGTCA
GATTTCTATAGGCAGGAATTGGAGGAGCAGGCGAGGGACAATCTTCTGGG
GGAGATTCAGATGTTGCGGGAAGGGGTCATTCCCTATGAGGAGCAGAAGG
GGGAGAAGGAGGGGGAGGGAGGGAAGGGGGAGATCTAGCCGATGAAAGAC
ATCAAAAAAGTTCACACCTATATCCTGGCAACCAAAACCCACAAGCCCGC
CCCCCCTCCCATCGAGGACGACAAGGACGAGGACCTCCTCCTCTTCCTCG
ATATCGATATGAGCATTCTCGGGCAGCCCCGACAGGTGTACATGATTCTG
ATTTATGACCCTGGCAGCAGCACGAATGAGGAGGACAGTGCGGAGCGTTT
TCATCTTTTTGCGCAGGAGGCCACAAGATTATCCTTGCCATCCACACACT
TCGCCTCTGTGTCTCCAATAGATACCACGGCCTGACCCACCTACAGCAAA
TGTTTGGGGAAATGGACCGGCACGCCGGCAGACTGGCCCGCCCTGACCTG
GTGGCACTCGCCATCTTTTTCCACGAATGTCACGTTCTCGTCCACTATGG
AGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGATGGAGACGACGCC
CGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCCTCGACCGGTGGTG
GCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGACGGTACGCCGGTG
CCATTCGCTCCGAGTACAAACATGTACCTCGCCTCACCTACCTCACCAAA
CGCGCGGAAGTACTCTCCTCCATGTTAGGGGAAGGAGGGGGAGGAAGATG
GATTTATGCGTCAGATTTCTATAGGCAGGAATTGGAGGAGCAGGCGAGGG
ACAATCTTCTGGGGGAGATTCAGATGTTGCGGGAAGGGGTCATTCCCTAT
GAGGAGCAGAAGGGGGAGAAGGAGGGGGAGGGAGGGAAGGGGGAGATCTA
GCCGATGAAAGACATCAAAAAAGTTCACACCTATATCCTGGCAACCAAAA
CCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAAGGACGAGGACCTC
CTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGCAGCCCCGACAGGT
GTACATGATTCTGATTTATGACCCTGGCAGCAGCACGAATGAGGAGGACA
GTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCACAAGATTATCCTTG
CCATCCACACACTTCGCCTCTGTGTCTCCAATAGATACCACGGCCTGACC
CACCTACAGCAAATGTTTGGGGAAATGGACCGGCACGCCGGCAGACTGGC
CCGCCCTGACCTGGTGGCACTCGCCATCTTTTTCCACGAATGTCACGTTC
TCGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGAGGCGTGCATTGGA
TGGAGACGACGCCCGGACGACGGGAGCATCCGCACCCGAAGAGGCGGTCC
TCGACCGGTGGTGGCAAGAGATTGTACAGGGGTACACGAATCCGGTGCGA
CGGTACGCCGGTGCCATTCGCTCCGAGTACAAACATGTACCTCGCCTCAC
CTACCTCACCAAACGCGCGGAAGTACTCTCCTCCATGTTAGGGGAAGGAG
GGGGAGGAAGATGGATTTATGCGTCAGATTTCTATAGGCAGGAATTGGAG
GAGCAGGCGAGGGACAATCTTCTGGGGGAGATTCAGATGTTGCGGGAAGG
GGTCATTCCCTATGAGGAGCAGAAGGGGGAGAAGGAGGGGGAGGGAGGGA
AGGGGGAGATCTAGCCGATGAAAGACATCAAAAAAGTTCACACCTATATC
CTGGCAACCAAAACCCACAAGCCCGCCCCCCCTCCCATCGAGGACGACAA
GGACGAGGACCTCCTCCTCTTCCTCGATATCGATATGAGCATTCTCGGGC
AGCCCCGACAGGTGTACATGATTCTGATTTATGACCCTGGCAGCAGCACG
AATGAGGAGGACAGTGCGGAGCGTTTTCATCTTTTTGCGCAGGAGGCCAC
AAGATTATCCTTGCCATCCACACACTTCGCCTCTGTGTCTCCAATAGATA
CCACGGCCTGACCCACCTACAGCAAATGTTTGGGGAAATGGACCGGCACG
CCGGCAGACTGGCCCGCCCTGACCTGGTGGCACTCGCCATCTTTTTCCAC
GAATGTCACGTTCTCGTCCACTATGGAGGTGGGCTTGTATGTGCGGTGGA
GGCGTGCATTGGATGGAGACGACGCCCGGACGACGGGAGCATCCGCACCC
GAAGAGGCGGTCCTCGACCGGTGGTGGCAAGAGATTGTACAGGGGTACAC
GAATCCGGTGCGACG

Synonyms

Publications