jgi.p|Nanoce1779_2|389071, mRNA_2861 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|389071
Unique Name	mRNA_2861
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2188
Alignment location	scaffold_7:104635..106957 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	389157
Track	FilteredModels2
ProteinId	389071

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:104635..106957 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|389071	gene_2861	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|389071	mRNA_2861-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2861	CDS_2861	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:104635..106957+
coding sequence from alignment at scaffold_7:104635..106957+

mRNA sequence

>mRNA_2861 ID=mRNA_2861|Name=jgi.p|Nanoce1779_2|389071|organism=Nannochloropsis oceanica|type=mRNA|length=2188bp
CGCCTGCTGCTATGTCACGACGTGTGCGGTGATTTACTGAGGGAGGCCTT
GGGGAATACCGACAAACACCAGTCAGTTTTGTTCCTTCCAGTCGAAACCT
GCCTTCGCACATTACAGACGTTCCCCGCACCTGTGGCGCCGTGCCTCCCC
TTACGTACAGATACTCTATTTGTTTTCTTCTATTGGCTGTGTACCTGTTA
TCAGATGTCTCCACCCTTCCTCCCGCACACAGGTGCGTCCATCATCCTTG
CTTTTACCTCGAGCAGCAAGTACACAGAGCCAATTGCTGCTTCTTCGAAA
CCAAGGCGCCCGCATCGCAGACAAAGACACCAGCCACTACCACGCACACA
TAGCCATGAGGACTCCTCATCCTGCGCCGCCACCACCATTACAACTACGG
CGGCGTGTGGTTGGTACCGACGGATACTCCAGCAGCGGCAGCAGCAGCAG
CGGCAGCAGCAGCAGCAGCCGTCTTACCTTCCTGCTGCTCATCGTTAGCA
GCGCCGTGGCCTCCCCATCTGCCTTTTGGGGCAGTGCGGGCTCCATACCA
TCACATCCTACGGCATTCCAAGGGAGGATGATGCTCTCTCCGTCCTCCAC
CTCGTCTTCCTCCTTTGGACGTGGTCTTCCAAGAAGACAGGCTGCCGGCG
GGGGTGACAAGAGCACCAAGGCGTCCTCCTCCTCCTCTTCCACCAGCACC
ACCTCCCCCTCCCCCGCCACTAGCACATCCTCCACCACCAACTCTCCTCG
TCCTCCCGTCCAATCCATCCCTTCCCGTCTCCTCGCCGAGTCTGCCGCTG
CAGGCGCTGCCGCTGCTGCCGCGACGGGGGCCGGAGCTCCTTCCTTCACG
CTTTCTGATTTGCTCCAACGCGATCGACAAGCAGTGACTTCCCTTCCTCC
TGCACCTCCCCAGGATATGAGCCAAGATAAAGAGATGCTGGAGGAATTGA
CGCACATGTTTTACCGCGCCGTGAATGAACGGAATTCAGATATGTTGCGA
AAAATCTGGTTAGAGGAGGAGATGAGTAGCAGCAGCAGCAGCAGTGTCGT
TTTAAGTGCCGGGGATGGCAATGTCACGATGGGCTACGACGCTGTTGTGG
ACTGGCTAAATGTGTTGAGGAAGGAGGAGCGGCGCCTCGACCCGGGCAAG
AAAGGGTTGATGTTGTGCCCTACCACGGACATAAGTGACCTGCGGGTGTG
TGTCAATGGCCTGCATGCCTGGGTTACATGCAAGGAGGTGATGGCCCGTG
GGCTATTGAGCAGCAACATGCAGGCGTACAACTTGGTGGGGAATGGGGGT
TTGGGAGGAGGGGGGATGATGAAGGAGGTGTTTTGTGGGACGAATGTGTG
GAGGAAGTGGAACGGTCAGTGGCGGTTGCTTAGTCATTTCTCAGGCAGGC
TGGCAAGTGTGCAGGAGGAGTTAAGTGAGTATTTAGAGTACAAAAAGATG
AAGGATATGGCAGGAGGAAGGGGGGGGAAAGGAGGGAGGGGAGGAGCGGG
TGGACAGCAAAATATTCAGCGCATCCCCTTGAGGCCTGAGGATTTGGGTC
TACCTCCGGGTATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGAC
GACGTGTTTGAGGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGC
GGGCTTTGACGACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGG
AGGGAGAGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGG
CTCGCGGCGGCGACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAA
TCGGTCGGCGGTTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGC
GGAAACTCTTCATGGAGGGGCGGTTGACGGAGGAGGAGAAGATGAAACTG
ATCTATTCGGTGGTTTATGCGACGTCGCAGGAGGAGGTTTCCCAGGTGGA
ACTGGCGTATGACTTGTTAGTGAAGGAATATGACGACGAGGCGGAATTTT
CGGAGCAGTTGAAGCTGATTTTGAACAGCCTGGAGTGAGAGGGAGAAAGC
GAAGGAGGAAGGGAGGGAGGAAGGAAGGGAGAAGGTCAAGGCGGAGAGGC
AACCTTTTCGTGTCTTTCTTCCCTCTCTCCCACCCGCCCCTCTCCGACCC
TTTCTAAGACCAAGGGATGGATGGAAGGTGGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|389071

>mRNA_2861-protein ID=mRNA_2861-protein|Name=jgi.p|Nanoce1779_2|389071|organism=Nannochloropsis oceanica|type=polypeptide|length=561bp
MRTPHPAPPPPLQLRRRVVGTDGYSSSGSSSSGSSSSSRLTFLLLIVSSA
VASPSAFWGSAGSIPSHPTAFQGRMMLSPSSTSSSSFGRGLPRRQAAGGG
DKSTKASSSSSSTSTTSPSPATSTSSTTNSPRPPVQSIPSRLLAESAAAG
AAAAAATGAGAPSFTLSDLLQRDRQAVTSLPPAPPQDMSQDKEMLEELTH
MFYRAVNERNSDMLRKIWLEEEMSSSSSSSVVLSAGDGNVTMGYDAVVDW
LNVLRKEERRLDPGKKGLMLCPTTDISDLRVCVNGLHAWVTCKEVMARGL
LSSNMQAYNLVGNGGLGGGGMMKEVFCGTNVWRKWNGQWRLLSHFSGRLA
SVQEELSEYLEYKKMKDMAGGRGGKGGRGGAGGQQNIQRIPLRPEDLGLP
PGMEGEAEITWEIDDDVFEVLGEEGAEGYEVAGFDDGKGNGWMEVELKEG
EREGGKEGEREGEQRLAAATLEDLAGSLLEWNRSAVFRKKTKKALSAVRK
LFMEGRLTEEEKMKLIYSVVYATSQEEVSQVELAYDLLVKEYDDEAEFSE
QLKLILNSLE*

mRNA from alignment at scaffold_7:104635..106957+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2861 ID=mRNA_2861|Name=jgi.p|Nanoce1779_2|389071|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp|location=Sequence derived from alignment at scaffold_7:104635..106957+ (Nannochloropsis oceanica)
CGCCTGCTGCTATGTCACGACGTGTGCGGTGATTTACTGAGGGAGGCCTT
GGGGAATACCGACAAACACCAGTCAGTTTTGTTCCTTCCAGTCGAAACCT
GCCTTCGCACATTACAGACGTTCCCCGCACCTGTGGCGCCGTGCCTCCCC
TTACGTACAGATACTCTATTTGTTTTCTTCTATTGGCTGTGTACCTGTTA
TCAGATGTCTCCACCCTTCCTCCCGCACACAGGTGCGTCCATCATCCTTG
CTTTTACCTCGAGCAGCAAGTACACAGAGCCAATTGCTGCTTCTTCGAAA
CCAAGGCGCCCGCATCGCAGACAAAGACACCAGCCACTACCACGCACACA
TAGCCATGAGGACTCCTCATCCTGCGCCGCCACCACCATTACAACTACGG
CGGCGTGTGGTTGGTACCGACGGATACTCCAGCAGCGGCAGCAGCAGCAG
CGGCAGCAGCAGCAGCAGCCGTCTTACCTTCCTGCTGCTCATCGTTAGCA
GCGCCGTGGCCTCCCCATCTGCCTTTTGGGGCAGTGCGGGCTCCATACCA
TCACATCCTACGGCATTCCAAGGGAGGATGATGCTCTCTCCGTCCTCCAC
CTCGTCTTCCTCCTTTGGACGTGGTCTTCCAAGAAGACAGGCTGCCGGCG
GGGGTGACAAGAGCACCAAGGCGTCCTCCTCCTCCTCTTCCACCAGCACC
ACCTCCCCCTCCCCCGCCACTAGCACATCCTCCACCACCAACTCTCCTCG
TCCTCCCGTCCAATCCATCCCTTCCCGTCTCCTCGCCGAGTCTGCCGCTG
CAGGCGCTGCCGCTGCTGCCGCGACGGGGGCCGGAGCTCCTTCCTTCACG
CTTTCTGATTTGCTCCAACGCGATCGACAAGCAGTGACTTCCCTTCCTCC
TGCACCTCCCCAGGATATGAGCCAAGATAAAGAGATGCTGGAGGAATTGA
CGCACATGTTTTACCGCGCCGTGAATGAACGGAATTCAGATATGTTGCGA
AAAATCTGGTTAGAGGAGGAGATGAGTAGCAGCAGCAGCAGCAGTGTCGT
TTTAAGTGCCGGGGATGGCAATGTCACGATGGGCTACGACGCTGTTGTGG
ACTGGCTAAATGTGTTGAGGAAGGAGGAGCGGCGCCTCGACCCGGGCAAG
AAAGGGTTGATGTTGTGCCCTACCACGGACATAAGTGACCTGCGGGTGTG
TGTCAATGGCCTGCATGCCTGGGTTACATGCAAGGAGGTGATGGCCCGTG
GGCTATTGAGCAGCAACATGCAGGCGTACAACTTGGTGGGGAATGGGGGT
TTGGGAGGAGGGGGGATGATGAAGGAGGTGTTTTGTGGGACGAATGTGTG
GAGGAAGTGGAACGGTCAGTGGCGGTTGCTTAGTCATTTCTCAGGCAGGC
TGGCAAGTGTGCAGGAGGAGTTAAGTGAGTATTTAGAGTACAAAAAGATG
AAGGATATGGCAGGAGGAAGGGGGGGGAAAGGAGGGAGGGGAGGAGCGGG
TGGACAGCAAAATATTCAGCGCATCCCCTTGAGGCCTGAGGATTTGGGTC
TACCTCCGGGTATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGAC
GACGTGTTTGAGGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGC
GGGCTTTGACGACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGG
AGGGAGAGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGG
CTCGCGGCGGCGACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAA
TCGGTCGGCGGTTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGC
GGAAACTCTTCATGGAGGGGCGGTTGACGGAGGAGGAGAAGGTGAGTGGG
GAGGGGAAGAGGGAGGAAGGGAAGAGGATTAGGAGATCACCACCGGGAAT
CCGTCAACAAAGCACAAGCTCACGTCTCTCTCTTCCTTCCTCCCTCCCTC
CCTTCCTCTCTATGCTTTCTCCCAAGATGAAACTGATCTATTCGGTGGTT
TATGCGACGTCGCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATGACTT
GTTAGTGAAGGAATATGACGACGAGGCGGAATTTTCGGAGCAGTTGAAGC
TGATTTTGAACAGCCTGGAGTGAGAGGGAGAAAGCGAAGGAGGAAGGGAG
GGAGGAAGGAAGGGAGAAGGTCAAGGCGGAGAGGCAACCTTTTCGTGTCT
TTCTTCCCTCTCTCCCACCCGCCCCTCTCCGACCCTTTCTAAGACCAAGG
GATGGATGGAAGGTGGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_7:104635..106957+

>mRNA_2861 ID=mRNA_2861|Name=jgi.p|Nanoce1779_2|389071|organism=Nannochloropsis oceanica|type=CDS|length=3366bp|location=Sequence derived from alignment at scaffold_7:104635..106957+ (Nannochloropsis oceanica)
ATGAGGACTCCTCATCCTGCGCCGCCACCACCATTACAACTACGGCGGCG
TGTGGTTGGTACCGACGGATACTCCAGCAGCGGCAGCAGCAGCAGCGGCA
GCAGCAGCAGCAGCCGTCTTACCTTCCTGCTGCTCATCGTTAGCAGCGCC
GTGGCCTCCCCATCTGCCTTTTGGGGCAGTGCGGGCTCCATACCATCACA
TCCTACGGCATTCCAAGGGAGGATGATGCTCTCTCCGTCCTCCACCTCGT
CTTCCTCCTTTGGACGTGGTCTTCCAAGAAGACAGGCTGCCGGCGGGGGT
GACAAGAGCACCAAGGCGTCCTCCTCCTCCTCTTCCACCAGCACCACCTC
CCCCTCCCCCGCCACTAGCACATCCTCCACCACCAACTCTCCTCGTCCTC
CCGTCCAATCCATCCCTTCCCGTCTCCTCGCCGAGTCTGCCGCTGCAGGC
GCTGCCGCTGCTGCCGCGACGGGGGCCGGAGCTCCTTCCTTCACGCTTTC
TGATTTGCTCCAACGCGATCGACAAGCAGTGACTTCCCTTCCTCCTGCAC
CTCCCCAGGATATGAGCCAAGATAAAGAGATGCTGGAGGAATTGACGCAC
ATGTTTTACCGCGCCGTGAATGAACGGAATTCAGATATGTTGCGAAAAAT
CTGGTTAGAGGAGGAGATGAGTAGCAGCAGCAGCAGCAGTGTCGTTTTAA
GTGCCGGGGATGGCAATGTCACGATGGGCTACGACGCTGTTGTGGACTGG
CTAAATGTGTTGAGGAAGGAGGAGCGGCGCCTCGACCCGGGCAAGAAAGG
GTTGATGTTGTGCCCTACCACGGACATAAGTGACCTGCGGGTGTGTGTCA
ATGGCCTGCATGCCTGGGTTACATGCAAGGAGGTGATGGCCCGTGGGCTA
TTGAGCAGCAACATGCAGGCGTACAACTTGGTGGGGAATGGGGGTTTGGG
AGGAGGGGGGATGATGAAGGAGGTGTTTTGTGGGACGAATGTGTGGAGGA
AGTGGAACGGTCAGTGGCGGTTGCTTAGTCATTTCTCAGGCAGGCTGGCA
AGTGTGCAGGAGGAGTTAAGTGAGTATTTAGAGTACAAAAAGATGAAGGA
TATGGCAGGAGGAAGGGGGGGGAAAGGAGGGAGGGGAGGAGCGGGTGGAC
AGCAAAATATTCAGCGCATCCCCTTGAGGCCTGAGGATTTGGGTCTACCT
CCGGGTATGGAGGGGGAGGCGGAGATAACGTGGGAGATAGACGACGACGT
GTTTGAGGTGTTGGGGGAAGAAGGGGCGGAGGGATATGAGGTGGCGGGCT
TTGACGACGGGAAAGGGAATGGGTGGATGGAGGTGGAGTTGAAGGAGGGA
GAGAGGGAGGGAGGGAAGGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGC
GGCGGCGACGCTGGAGGATTTGGCAGGGAGTTTACTGGAGTGGAATCGGT
CGGCGGTTTTTCGAAAGAAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAA
CTCTTCATGGAGGGGCGGTTGACGGAGGAGGAGAAGATGAAACTGATCTA
TTCGGTGGTTTATGCGACGTCGCAGGAGGAGGTTTCCCAGGTGGAACTGG
CGTATGACTTGTTAGTGAAGGAATATGACGACGAGGCGGAATTTTCGGAG
CAGTTGAAGCTGATTTTGAACAGCCTGGAGTGAATGAGGACTCCTCATCC
TGCGCCGCCACCACCATTACAACTACGGCGGCGTGTGGTTGGTACCGACG
GATACTCCAGCAGCGGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCCGT
CTTACCTTCCTGCTGCTCATCGTTAGCAGCGCCGTGGCCTCCCCATCTGC
CTTTTGGGGCAGTGCGGGCTCCATACCATCACATCCTACGGCATTCCAAG
GGAGGATGATGCTCTCTCCGTCCTCCACCTCGTCTTCCTCCTTTGGACGT
GGTCTTCCAAGAAGACAGGCTGCCGGCGGGGGTGACAAGAGCACCAAGGC
GTCCTCCTCCTCCTCTTCCACCAGCACCACCTCCCCCTCCCCCGCCACTA
GCACATCCTCCACCACCAACTCTCCTCGTCCTCCCGTCCAATCCATCCCT
TCCCGTCTCCTCGCCGAGTCTGCCGCTGCAGGCGCTGCCGCTGCTGCCGC
GACGGGGGCCGGAGCTCCTTCCTTCACGCTTTCTGATTTGCTCCAACGCG
ATCGACAAGCAGTGACTTCCCTTCCTCCTGCACCTCCCCAGGATATGAGC
CAAGATAAAGAGATGCTGGAGGAATTGACGCACATGTTTTACCGCGCCGT
GAATGAACGGAATTCAGATATGTTGCGAAAAATCTGGTTAGAGGAGGAGA
TGAGTAGCAGCAGCAGCAGCAGTGTCGTTTTAAGTGCCGGGGATGGCAAT
GTCACGATGGGCTACGACGCTGTTGTGGACTGGCTAAATGTGTTGAGGAA
GGAGGAGCGGCGCCTCGACCCGGGCAAGAAAGGGTTGATGTTGTGCCCTA
CCACGGACATAAGTGACCTGCGGGTGTGTGTCAATGGCCTGCATGCCTGG
GTTACATGCAAGGAGGTGATGGCCCGTGGGCTATTGAGCAGCAACATGCA
GGCGTACAACTTGGTGGGGAATGGGGGTTTGGGAGGAGGGGGGATGATGA
AGGAGGTGTTTTGTGGGACGAATGTGTGGAGGAAGTGGAACGGTCAGTGG
CGGTTGCTTAGTCATTTCTCAGGCAGGCTGGCAAGTGTGCAGGAGGAGTT
AAGTGAGTATTTAGAGTACAAAAAGATGAAGGATATGGCAGGAGGAAGGG
GGGGGAAAGGAGGGAGGGGAGGAGCGGGTGGACAGCAAAATATTCAGCGC
ATCCCCTTGAGGCCTGAGGATTTGGGTCTACCTCCGGGTATGGAGGGGGA
GGCGGAGATAACGTGGGAGATAGACGACGACGTGTTTGAGGTGTTGGGGG
AAGAAGGGGCGGAGGGATATGAGGTGGCGGGCTTTGACGACGGGAAAGGG
AATGGGTGGATGGAGGTGGAGTTGAAGGAGGGAGAGAGGGAGGGAGGGAA
GGAGGGAGAGAGGGAGGGGGAGCAGAGGCTCGCGGCGGCGACGCTGGAGG
ATTTGGCAGGGAGTTTACTGGAGTGGAATCGGTCGGCGGTTTTTCGAAAG
AAGACGAAGAAAGCCCTGAGCGCTGTGCGGAAACTCTTCATGGAGGGGCG
GTTGACGGAGGAGGAGAAGATGAAACTGATCTATTCGGTGGTTTATGCGA
CGTCGCAGGAGGAGGTTTCCCAGGTGGAACTGGCGTATGACTTGTTAGTG
AAGGAATATGACGACGAGGCGGAATTTTCGGAGCAGTTGAAGCTGATTTT
GAACAGCCTGGAGTGA

Synonyms

Publications