jgi.p|Nanoce1779_2|576818, mRNA_286 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576818
Unique NamemRNA_286
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length451
Alignment locationscaffold_3:706920..708106 +

Link to JBrowse

Properties
Property NameValue
TranscriptId576904
TrackFilteredModels2
ProteinId576818
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:706920..708106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576818gene_286Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576818mRNA_286-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_286CDS_286Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_286 ID=mRNA_286|Name=jgi.p|Nanoce1779_2|576818|organism=Nannochloropsis oceanica|type=mRNA|length=451bp
ACAGTTCACCATGGGACACAAGGCTCTTCAAAACGCCCATCCTAAGAAGT
ATGGCAAGGGCGGCCGCTTGTGCCGAGTTTGCGGCAACGGCCACGGTATG
ATTCGCAAGTATGACTTGAACATGTGCCGGCAGTGCTTTAAGGAGAAGGC
TGGGGACATCGGATTCATCAAGTACAACTAAGCCACAAAGTGCGATAGGA
TCGGACAGAATCAACATATAGCATAAGCGAGAAAGGAAGGGTGGCCCAGG
AGTAAGAGAACAAGACATGGGATGGTCAGACACCAGCACACCGTTTGCTC
TGCACTTGTTGTTCTTTCTTGGAGTTGGAGACGTTTTATTTTTGAGGCGG
TGGTAGGTGAGAGGGAAGCGAGCAAGGCTCCGTTTCCTGTATCCCACACA
GACCGAATACAAAGCAAACACCAAAGAAAGAAACAAATGGCAGACTGGCA
A
back to top

protein sequence of jgi.p|Nanoce1779_2|576818

>mRNA_286-protein ID=mRNA_286-protein|Name=jgi.p|Nanoce1779_2|576818|organism=Nannochloropsis oceanica|type=polypeptide|length=57bp
MGHKALQNAHPKKYGKGGRLCRVCGNGHGMIRKYDLNMCRQCFKEKAGDI
GFIKYN*
back to top

mRNA from alignment at scaffold_3:706920..708106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_286 ID=mRNA_286|Name=jgi.p|Nanoce1779_2|576818|organism=Nannochloropsis oceanica|type=mRNA|length=1187bp|location=Sequence derived from alignment at scaffold_3:706920..708106+ (Nannochloropsis oceanica)
ACAGTTCACCATGGGACACAAGGCTCTTCAAAACGCCCATCCTAAGAAGT
ATGGCAAGGGCGGCCGCTTGTGCCGAGTTTGCGGTAAGTACTGTGGAGGG
AGGAAGAGGAAGGAGGAGGAATGGTGGTGGATGGGAAAGCAGCGAATAAC
AGGAGAAATGGGGAGGGGGGCGTTTGTACGTTCAGCATGGTGGTCAAGTG
CGTACAGGATGTACATCAGTACCTTTAGAAATCCCTCGCGATGGCGAGTG
GAAGGCACCGCTGGGAGGGAGGCTCGCGCCGTACAATGTAAGGACAAATA
CGCGCGGGCCGTCAAAGCGAGGGGCCTGTGCGTCTTGGCTTTCTAAGGGT
CAGGAAGCCTAAGGAACATTGGTGAAGGGTACAAGCGCGCGTGGATCTGC
CGGGGATAGCGGCAGGGGACTGTGGGTCATGCCCGTGAGCTATGCCGCCG
CACAAGCAATAAGAGATGCCGGTTCGGGAATTGGATAGATTGACACATCG
CTCATCCCTCCACCTTAATCTCTCTTTGACTTGAAACAACAGGCAACGGC
CACGGTATGATTCGCAAGTATGACTTGAACATGTGCCGGCAGTGCTTTAA
GGAGAAGGCTGGGGACATCGGATTCATCAAGGTAGGGACGCTGCCGATGG
AGGAGGAAGAAGGAAGGGGGATGATGCTGGGGTGATCCACCAGAGGGAAG
AGGAGGAGAGGATTTTATGCCTATTGGATCTGTCAGTGTACCGCCAATAA
TTCATAGTCAACGGTCTCAATGTAGACGGGCGCGATGCCGAGAGCTTACG
ATCTTTTTTTGGCCAATACGCGAATAACGCCACCTCATCTCACCATCTTC
CTTCCTTCGTTCCTCCCTCTTTGCTATCCTTTCTCCCTCCCTTCCCATTC
TTCACCAGTACAACTAAGCCACAAAGTGCGATAGGATCGGACAGAATCAA
CATATAGCATAAGCGAGAAAGGAAGGGTGGCCCAGGAGTAAGAGAACAAG
ACATGGGATGGTCAGACACCAGCACACCGTTTGCTCTGCACTTGTTGTTC
TTTCTTGGAGTTGGAGACGTTTTATTTTTGAGGCGGTGGTAGGTGAGAGG
GAAGCGAGCAAGGCTCCGTTTCCTGTATCCCACACAGACCGAATACAAAG
CAAACACCAAAGAAAGAAACAAATGGCAGACTGGCAA
back to top

Coding sequence (CDS) from alignment at scaffold_3:706920..708106+

>mRNA_286 ID=mRNA_286|Name=jgi.p|Nanoce1779_2|576818|organism=Nannochloropsis oceanica|type=CDS|length=513bp|location=Sequence derived from alignment at scaffold_3:706920..708106+ (Nannochloropsis oceanica)
ATGGGACACAAGGCTCTTCAAAACGCCCATCCTAAGAAGTATGGCAAGGG
CGGCCGCTTGTGCCGAGTTTGCGGCAACGGCCACGGTATGATTCGCAAGT
ATGACTTGAACATGTGCCGGCAGTGCTTTAAGGAGAAGGCTGGGGACATC
GGATTCATCAAGTACAACTAAATGGGACACAAGGCTCTTCAAAACGCCCA
TCCTAAGAAGTATGGCAAGGGCGGCCGCTTGTGCCGAGTTTGCGGCAACG
GCCACGGTATGATTCGCAAGTATGACTTGAACATGTGCCGGCAGTGCTTT
AAGGAGAAGGCTGGGGACATCGGATTCATCAAGTACAACTAAATGGGACA
CAAGGCTCTTCAAAACGCCCATCCTAAGAAGTATGGCAAGGGCGGCCGCT
TGTGCCGAGTTTGCGGCAACGGCCACGGTATGATTCGCAAGTATGACTTG
AACATGTGCCGGCAGTGCTTTAAGGAGAAGGCTGGGGACATCGGATTCAT
CAAGTACAACTAA
back to top
Synonyms
Publications