jgi.p|Nanoce1779_2|638048, mRNA_2855 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|638048
Unique Name	mRNA_2855
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1734
Alignment location	scaffold_7:84531..86416 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	638134
Track	FilteredModels2
ProteinId	638048

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:84531..86416 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638048	gene_2855	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|638048	mRNA_2855-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2855	CDS_2855	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:84531..86416+
coding sequence from alignment at scaffold_7:84531..86416+

mRNA sequence

>mRNA_2855 ID=mRNA_2855|Name=jgi.p|Nanoce1779_2|638048|organism=Nannochloropsis oceanica|type=mRNA|length=1734bp
ATGGCCGCCTCCACTTCTACCTCCCCCACTACCACTACCTCAGACTCCGC
CTCCACCACTCCCATAAAAAGGCAAAACTGCAATGTTCTTATTGCCGGCG
GTGGCCCTGCCGGCCTCGCTGCTGCACTTTGTCTCGCTCGCCGTGGCTAC
TCTGACATTCACATCCTCGAACGCAACCCCTCCGCCTCCTACTTCGAAGT
GGACAAGTCATACCTGTATCGCATTGACGGTCGGGGACAGCGGCTCACAG
GCTTGCTAGGTATCACGGAGCAAATGAAAGAGGTGTCCATAACGACGGAA
GAATTCTTGGACATAACCATCGTCCAACCTGACGGTACTGTGAAAACAGT
TAAGGCCCCCGCAGACCCGAGTCAACAGACCGCTTATTGGCTCCCCCGTC
GTGCCCTTCTCTCCTTCCTCTCATCCCAAATCGACAAGGAAGACTGCGGA
AAGGCCATTACATTTCACTTTGGCGTGAACATTGAGAAATTGGTCATGCC
GCGGACGCAGGGAGAGGTGGAGGCGCCCGGGGCCCAAGCAACGGTACAGG
TGAGGATGGGAGATGGAACGAGGGTGGAGTTCCTCTCGCAAAAGGTCTTG
GGCTGCGACGGGATGAACAGTAAGATTCGAACAGGCTTGGCTGATTGGGC
AGCCGGAGTATCAGGAGAAGCAGCAGGCGTGGAGAAGGAGACAAACAGCA
AGAAGAGCAAGACTCCTCGTTTTGGCCTCCACTTCATCAACTCGCCTTCC
GCTGGCCTCCGATATAAGATTCTCACCCTCCTCGACGATTTCCCCCTTCT
TGCTTCCACCCCTCAAAATCTAACCGTCAAACAAACGTGCTATTCCTACG
TCGGTCGCCCCACCGGTGGGTACCTCTCTCCCCTTCCCCCTCTCCGCCTC
GGCTTGCTCCCCTTTAAAATGAAGAATATACCCCGCACGGCGAACATCAT
CACCGTCCCCAACGCTCCCATTTTCTCGCTCACCACGGGCCCTGAAGTCC
TGGCGTTTCTCAAAAAAGAATTGCCCCAGTGTGACATTGACAGGATGGTT
TCAAAGGAGGAGGCCGATCGCTTTGCCGCCTCGCCTGGGGGATATTTCCC
TCGACCCCAGTACTGTCTCGAGACGCAGGTGGTCCTTGGAGGTGGAAAGG
AGAGATGGAAGGAGGGAGGGATGGAGGAAGGGAAGGAGGGAGGGGGCATA
GTGCTAATGGGCGATGCGATTCATGCTTTTCCTCCTGATCTTGGCGCCGG
CGTAAACATCGCGTTGTTGGATGTGCTTGATTTTATCTTTGCTCTAGATC
GAAGTGAGGGGGACTGGGGACAGGCGCTGCCATTGTATGAAAACTTGAGG
GCGCCTCAAAGTCGGGCGGTGTGCGAGTTAATCCCGATTGGGTTCCCCCA
GCAATATAACCACATGCTTCCCATCCAGAAATCGATCAAATTGTTGGGGG
TTGGGATGAGGGTGGCGTTGAGCAAGGCTTTTCCATGGGTGGTGGCACCG
CCGGTGTTCTTTATGTGTCAGGATGTGAGGTTGGATTACTCGCAGGTGTG
GCAAAGGGCGAGGAGGACTACGAGGGTGTTGAAAGCGGTGGGGATGGCAC
TAGTGGCAGCGATGGTTTGGCAGCTGTGGGGGGGAAGGGGGGGAGGGAGG
GGGCTGCAGGAGGGGTTGGGGTGCGTGGGGCGAAAGGAGGAGGAGGATGA
TTGGGAGGAGGAGGAGGAGGAGGAGGATGAATAG

protein sequence of jgi.p|Nanoce1779_2|638048

>mRNA_2855-protein ID=mRNA_2855-protein|Name=jgi.p|Nanoce1779_2|638048|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MAASTSTSPTTTTSDSASTTPIKRQNCNVLIAGGGPAGLAAALCLARRGY
SDIHILERNPSASYFEVDKSYLYRIDGRGQRLTGLLGITEQMKEVSITTE
EFLDITIVQPDGTVKTVKAPADPSQQTAYWLPRRALLSFLSSQIDKEDCG
KAITFHFGVNIEKLVMPRTQGEVEAPGAQATVQVRMGDGTRVEFLSQKVL
GCDGMNSKIRTGLADWAAGVSGEAAGVEKETNSKKSKTPRFGLHFINSPS
AGLRYKILTLLDDFPLLASTPQNLTVKQTCYSYVGRPTGGYLSPLPPLRL
GLLPFKMKNIPRTANIITVPNAPIFSLTTGPEVLAFLKKELPQCDIDRMV
SKEEADRFAASPGGYFPRPQYCLETQVVLGGGKERWKEGGMEEGKEGGGI
VLMGDAIHAFPPDLGAGVNIALLDVLDFIFALDRSEGDWGQALPLYENLR
APQSRAVCELIPIGFPQQYNHMLPIQKSIKLLGVGMRVALSKAFPWVVAP
PVFFMCQDVRLDYSQVWQRARRTTRVLKAVGMALVAAMVWQLWGGRGGGR
GLQEGLGCVGRKEEEDDWEEEEEEEDE*

mRNA from alignment at scaffold_7:84531..86416+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2855 ID=mRNA_2855|Name=jgi.p|Nanoce1779_2|638048|organism=Nannochloropsis oceanica|type=mRNA|length=1886bp|location=Sequence derived from alignment at scaffold_7:84531..86416+ (Nannochloropsis oceanica)
ATGGCCGCCTCCACTTCTACCTCCCCCACTACCACTACCTCAGACTCCGC
CTCCACCACTCCCATAAAAAGGCAAAACTGCAATGTTCTTATTGCCGGCG
GTGGCCCTGCCGGCCTCGCTGCTGCACTTTGTCTCGCTCGCCGTGGCTAC
TCTGACATTCACATCCTCGAACGCAACCCCTCCGCCTCCTACTTCGAAGT
GGACAAGTCATACCTGTATCGCATTGACGGTCGGGGACAGCGGCTCACAG
GCTTGCTAGGTATCACGGAGCAAATGAAAGAGGTGTCCATAACGACGGAA
GAATTCTTGGACATAACCATCGTCCAACCTGACGGTACTGTGAAAACAGT
TAAGGCCCCCGCAGACCCGAGTCAACAGACCGCTTATTGGCTCCCCCGTC
GTGCCCTTCTCTCCTTCCTCTCATCCCAAATCGACAAGGAAGACTGCGGA
AAGGCCATTACATTTCACTTTGGCGTGAACATTGAGAAATTGGTCATGCC
GCGGACGCAGGGAGAGGTGGAGGCGCCCGGGGCCCAAGCAACGGTACAGG
TGAGGATGGGAGATGGAACGAGGGTGGAGTTCCTCTCGCAAAAGGTCTTG
GGCTGCGACGGGATGAACAGTAAGATTCGAACAGGCTTGGCTGATTGGGC
AGCCGGAGTATCAGGAGAAGCAGCAGGCGTGGAGAAGGAGACAAACAGCA
AGAAGAGCAAGACTCCTCGTTTTGGCCTCCACTTCATCAACTCGCCTTCC
GCTGGCCTCCGATATAAGATTCTCACCCTCCTCGACGATTTCCCCCTTCT
TGCTTCCACCCCTCAAAATCTAACCGTCAAACAAACGTGCTATTCCTACG
TCGGTCGCCCCACCGGTGGGTACCTCTCTCCCCTTCCCCCTCTCCGCCTC
GGCTTGCTCCCCTTTAAAATGAAGAATATACCCCGCACGGCGAACATCAT
CACCGTCCCCAACGCTCCCATTTTCTCGCTCACCACGGGCCCTGAAGTCC
TGGCGTTTCTCAAAAAAGAATTGCCCCAGTGTGACATTGACAGGATGGTT
TCAAAGGAGGAGGCCGATCGCTTTGCCGCCTCGCCTGGGGGATATTTCCC
TCGACCCCAGTACTGTCTCGAGACGCAGGTGGTCCTTGGAGGTGGAAAGG
AGAGATGGAAGGAGGGAGGGATGGAGGAAGGGAAGGAGGGAGGGGGCATA
GTGCTAATGGGCGATGCGATTCATGCTTTTCCTCCTGATCTTGGCGCCGG
CGTAAACATCGCGTTGTTGGATGTGCTTGATTTTATCTTTGCTCTAGATC
GAAGTGAGGGGGACTGGGGACAGGCGCTGCCATTGTATGAAAACTTGAGG
GCGCCTCAAAGTCGGGCGGTGTGCGAGTTAATCCCGATTGGGTTCCCCCA
GCAATATAACCACATGCTTCCCATCCAGAAATCGATCAAATTGTTGGGGG
TTGGGATGAGGGTGGCGTTGAGCAAGGCTTTTCCATGGGTGGTGGCACCG
CCGGTGTTCTTTATGTGTCAGGATGTGAGGTTGGATTACTCGCAGGTGTG
GCAAAGGGCGAGGAGGACTACGAGGGTGTTGAAAGCGGTGGGGATGGCAC
TAGTGGCAGCGATGGTTTGGCAGCTGTGGGGGGGAAGGGGGGGAGGGAGG
GGGCTGCAGGAGGGGTTGGGGTGCGTGGTAGGTTGGATGGGTAAGACGAG
AGGCTGGCTTGGACACGGACGGTTAGGGGGAGGAGGAGGGGGAGGAGGCG
TCATATGAGTTGGCATTGGGAGGAACCAGGGAAAAGAGGGATCTAAAAGT
TGACGAGGAGCGATTTAAAAATTGACGAGGGGCGAAAGGAGGAGGAGGAT
GATTGGGAGGAGGAGGAGGAGGAGGAGGATGAATAG

Coding sequence (CDS) from alignment at scaffold_7:84531..86416+

>mRNA_2855 ID=mRNA_2855|Name=jgi.p|Nanoce1779_2|638048|organism=Nannochloropsis oceanica|type=CDS|length=3468bp|location=Sequence derived from alignment at scaffold_7:84531..86416+ (Nannochloropsis oceanica)
ATGGCCGCCTCCACTTCTACCTCCCCCACTACCACTACCTCAGACTCCGC
CTCCACCACTCCCATAAAAAGGCAAAACTGCAATGTTCTTATTGCCGGCG
GTGGCCCTGCCGGCCTCGCTGCTGCACTTTGTCTCGCTCGCCGTGGCTAC
TCTGACATTCACATCCTCGAACGCAACCCCTCCGCCTCCTACTTCGAAGT
GGACAAGTCATACCTGTATCGCATTGACGGTCGGGGACAGCGGCTCACAG
GCTTGCTAGGTATCACGGAGCAAATGAAAGAGGTGTCCATAACGACGGAA
GAATTCTTGGACATAACCATCGTCCAACCTGACGGTACTGTGAAAACAGT
TAAGGCCCCCGCAGACCCGAGTCAACAGACCGCTTATTGGCTCCCCCGTC
GTGCCCTTCTCTCCTTCCTCTCATCCCAAATCGACAAGGAAGACTGCGGA
AAGGCCATTACATTTCACTTTGGCGTGAACATTGAGAAATTGGTCATGCC
GCGGACGCAGGGAGAGGTGGAGGCGCCCGGGGCCCAAGCAACGGTACAGG
TGAGGATGGGAGATGGAACGAGGGTGGAGTTCCTCTCGCAAAAGGTCTTG
GGCTGCGACGGGATGAACAGTAAGATTCGAACAGGCTTGGCTGATTGGGC
AGCCGGAGTATCAGGAGAAGCAGCAGGCGTGGAGAAGGAGACAAACAGCA
AGAAGAGCAAGACTCCTCGTTTTGGCCTCCACTTCATCAACTCGCCTTCC
GCTGGCCTCCGATATAAGATTCTCACCCTCCTCGACGATTTCCCCCTTCT
TGCTTCCACCCCTCAAAATCTAACCGTCAAACAAACGTGCTATTCCTACG
TCGGTCGCCCCACCGGTGGGTACCTCTCTCCCCTTCCCCCTCTCCGCCTC
GGCTTGCTCCCCTTTAAAATGAAGAATATACCCCGCACGGCGAACATCAT
CACCGTCCCCAACGCTCCCATTTTCTCGCTCACCACGGGCCCTGAAGTCC
TGGCGTTTCTCAAAAAAGAATTGCCCCAGTGTGACATTGACAGGATGGTT
TCAAAGGAGGAGGCCGATCGCTTTGCCGCCTCGCCTGGGGGATATTTCCC
TCGACCCCAGTACTGTCTCGAGACGCAGGTGGTCCTTGGAGGTGGAAAGG
AGAGATGGAAGGAGGGAGGGATGGAGGAAGGGAAGGAGGGAGGGGGCATA
GTGCTAATGGGCGATGCGATTCATGCTTTTCCTCCTGATCTTGGCGCCGG
CGTAAACATCGCGTTGTTGGATGTGCTTGATTTTATCTTTGCTCTAGATC
GAAGTGAGGGGGACTGGGGACAGGCGCTGCCATTGTATGAAAACTTGAGG
GCGCCTCAAAGTCGGGCGGTGTGCGAGTTAATCCCGATTGGGTTCCCCCA
GCAATATAACCACATGCTTCCCATCCAGAAATCGATCAAATTGTTGGGGG
TTGGGATGAGGGTGGCGTTGAGCAAGGCTTTTCCATGGGTGGTGGCACCG
CCGGTGTTCTTTATGTGTCAGGATGTGAGGTTGGATTACTCGCAGGTGTG
GCAAAGGGCGAGGAGGACTACGAGGGTGTTGAAAGCGGTGGGGATGGCAC
TAGTGGCAGCGATGGTTTGGCAGCTGTGGGGGGGAAGGGGGGGAGGGAGG
GGGCTGCAGGAGGGGTTGGGGTGCGTGGGGCGAAAGGAGGAGGAGGATGA
TTGGGAGGAGGAGGAGGAGGAGGAGGATGAATAGATGGCCGCCTCCACTT
CTACCTCCCCCACTACCACTACCTCAGACTCCGCCTCCACCACTCCCATA
AAAAGGCAAAACTGCAATGTTCTTATTGCCGGCGGTGGCCCTGCCGGCCT
CGCTGCTGCACTTTGTCTCGCTCGCCGTGGCTACTCTGACATTCACATCC
TCGAACGCAACCCCTCCGCCTCCTACTTCGAAGTGGACAAGTCATACCTG
TATCGCATTGACGGTCGGGGACAGCGGCTCACAGGCTTGCTAGGTATCAC
GGAGCAAATGAAAGAGGTGTCCATAACGACGGAAGAATTCTTGGACATAA
CCATCGTCCAACCTGACGGTACTGTGAAAACAGTTAAGGCCCCCGCAGAC
CCGAGTCAACAGACCGCTTATTGGCTCCCCCGTCGTGCCCTTCTCTCCTT
CCTCTCATCCCAAATCGACAAGGAAGACTGCGGAAAGGCCATTACATTTC
ACTTTGGCGTGAACATTGAGAAATTGGTCATGCCGCGGACGCAGGGAGAG
GTGGAGGCGCCCGGGGCCCAAGCAACGGTACAGGTGAGGATGGGAGATGG
AACGAGGGTGGAGTTCCTCTCGCAAAAGGTCTTGGGCTGCGACGGGATGA
ACAGTAAGATTCGAACAGGCTTGGCTGATTGGGCAGCCGGAGTATCAGGA
GAAGCAGCAGGCGTGGAGAAGGAGACAAACAGCAAGAAGAGCAAGACTCC
TCGTTTTGGCCTCCACTTCATCAACTCGCCTTCCGCTGGCCTCCGATATA
AGATTCTCACCCTCCTCGACGATTTCCCCCTTCTTGCTTCCACCCCTCAA
AATCTAACCGTCAAACAAACGTGCTATTCCTACGTCGGTCGCCCCACCGG
TGGGTACCTCTCTCCCCTTCCCCCTCTCCGCCTCGGCTTGCTCCCCTTTA
AAATGAAGAATATACCCCGCACGGCGAACATCATCACCGTCCCCAACGCT
CCCATTTTCTCGCTCACCACGGGCCCTGAAGTCCTGGCGTTTCTCAAAAA
AGAATTGCCCCAGTGTGACATTGACAGGATGGTTTCAAAGGAGGAGGCCG
ATCGCTTTGCCGCCTCGCCTGGGGGATATTTCCCTCGACCCCAGTACTGT
CTCGAGACGCAGGTGGTCCTTGGAGGTGGAAAGGAGAGATGGAAGGAGGG
AGGGATGGAGGAAGGGAAGGAGGGAGGGGGCATAGTGCTAATGGGCGATG
CGATTCATGCTTTTCCTCCTGATCTTGGCGCCGGCGTAAACATCGCGTTG
TTGGATGTGCTTGATTTTATCTTTGCTCTAGATCGAAGTGAGGGGGACTG
GGGACAGGCGCTGCCATTGTATGAAAACTTGAGGGCGCCTCAAAGTCGGG
CGGTGTGCGAGTTAATCCCGATTGGGTTCCCCCAGCAATATAACCACATG
CTTCCCATCCAGAAATCGATCAAATTGTTGGGGGTTGGGATGAGGGTGGC
GTTGAGCAAGGCTTTTCCATGGGTGGTGGCACCGCCGGTGTTCTTTATGT
GTCAGGATGTGAGGTTGGATTACTCGCAGGTGTGGCAAAGGGCGAGGAGG
ACTACGAGGGTGTTGAAAGCGGTGGGGATGGCACTAGTGGCAGCGATGGT
TTGGCAGCTGTGGGGGGGAAGGGGGGGAGGGAGGGGGCTGCAGGAGGGGT
TGGGGTGCGTGGGGCGAAAGGAGGAGGAGGATGATTGGGAGGAGGAGGAG
GAGGAGGAGGATGAATAG

Synonyms

Publications