jgi.p|Nanoce1779_2|583569, mRNA_2854 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583569
Unique NamemRNA_2854
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1952
Alignment locationscaffold_7:82166..84117 -

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Properties
Property NameValue
TranscriptId583655
TrackFilteredModels2
ProteinId583569
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:82166..84117 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583569gene_2854Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583569mRNA_2854-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2854CDS_2854Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2854 ID=mRNA_2854|Name=jgi.p|Nanoce1779_2|583569|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp
ACAGGCACGCATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGT
CAAGTGCATCCGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATC
AGCAGCGCCGATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCT
GGATTTTGGGGCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTG
ACGATGACGGGCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTG
GCGGTGTATAAGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGG
ACTGGGCATGCTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGA
AGGCCAAAAGACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACG
GCAGCTTCGACCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGA
TGTGCCCCCACGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAG
GAGACCTGTATGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCG
TCACCGTTGTCCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTC
ACAATCAAACATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGC
AAAATCCGCCTCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAG
CCCAACGTAACGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCA
AGAATTGCTGTTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGC
GGCTCCAGCCTCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAG
GAGGAGGACGACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGA
ATACCAGCAGAACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCA
CTGGCCATGTGTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAG
GGACCGGAAGGCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCAC
CGTCGAAGTGCTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTC
CATTTTCGTCCTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCG
CACTGCGGTTGGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGG
GCCTAGTGGTAGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGT
TGGCCATGGGTGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCC
CCTGGGAGCGATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGAC
ACCGCAGCCTTTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATT
TTGAGAAATCCGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTA
GTCACCGCCGCTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAA
TATCGCAGTGTTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCT
TTGTCGCTGGGTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGC
TGCGCGGATGGGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCA
GCAGTTTCGGGAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGG
TGAGGCAACTGCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTT
GACTTGTACTTGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGG
GGATGCCAGTGCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTA
CGGGGGCTGCTCCTATGAAAGGGAGGTGAGGTTTCTGTGTATAAAACAAT
TGTAGTGCAAAAGGACCAGAACACACAGCGAAATCTGTACATCTCTGTTA
TT
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protein sequence of jgi.p|Nanoce1779_2|583569

>mRNA_2854-protein ID=mRNA_2854-protein|Name=jgi.p|Nanoce1779_2|583569|organism=Nannochloropsis oceanica|type=polypeptide|length=623bp
MIKPKNNDEMSAGSSASEMSSVPPEAAPTISSADIGEEVFFLARKELDFG
ANHAHTALLLADIDDDGQQELIVGSLDGKLAVYKGLERTEPWALATGLGM
LRVFATGRVWPWLKAKRQPPQASAMKFTSTAASTKEEACESEAEDVDVPP
REHPSQLIAVTVEGDLYVFDFRNAPHSNLSSPLSTVHSNTVSEQRASQSN
MKDNNILQSPSPAQNPPPWKLAPIQTLSVEPNVTAALIVDVDGDGHQELL
LGRMDGVVQAFGWRLQPLPPSPGGAEQDEEEEDDDNKEEENDNEEDEYQQ
NYKYPEPELYEKGTGHVSSSVVSLSTVRFKGPEGSALCVVAGLDTGTVEV
LRCHWRGNVDDNAPFSSLVDLGVGGGLPLPHCGWSGPLTCCSLGSGGPSG
SRGGFAVAGLDGRLAMGVVEPPRKRQEQQPPGSDEDLVWRTEWSLQTPQP
FYAIAPFNVSRNDFEKSGFAACAWSGFTCLVTAAGTRSSSDGVSPVNIAV
FDPSKMFVPPLRGFVAGCFGEHNEPCLLYSCADGHILVFHDLERQLQQFR
EVSPDTEDETAGAVRQLRSEEAQRLVKAWVDLYLERSADDTGTETKGDAS
AKNKGIKSDKGAPTGAAPMKGR*
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mRNA from alignment at scaffold_7:82166..84117-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2854 ID=mRNA_2854|Name=jgi.p|Nanoce1779_2|583569|organism=Nannochloropsis oceanica|type=mRNA|length=1952bp|location=Sequence derived from alignment at scaffold_7:82166..84117- (Nannochloropsis oceanica)
ACAGGCACGCATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGT
CAAGTGCATCCGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATC
AGCAGCGCCGATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCT
GGATTTTGGGGCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTG
ACGATGACGGGCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTG
GCGGTGTATAAGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGG
ACTGGGCATGCTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGA
AGGCCAAAAGACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACG
GCAGCTTCGACCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGA
TGTGCCCCCACGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAG
GAGACCTGTATGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCG
TCACCGTTGTCCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTC
ACAATCAAACATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGC
AAAATCCGCCTCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAG
CCCAACGTAACGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCA
AGAATTGCTGTTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGC
GGCTCCAGCCTCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAG
GAGGAGGACGACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGA
ATACCAGCAGAACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCA
CTGGCCATGTGTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAG
GGACCGGAAGGCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCAC
CGTCGAAGTGCTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTC
CATTTTCGTCCTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCG
CACTGCGGTTGGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGG
GCCTAGTGGTAGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGT
TGGCCATGGGTGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCC
CCTGGGAGCGATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGAC
ACCGCAGCCTTTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATT
TTGAGAAATCCGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTA
GTCACCGCCGCTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAA
TATCGCAGTGTTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCT
TTGTCGCTGGGTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGC
TGCGCGGATGGGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCA
GCAGTTTCGGGAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGG
TGAGGCAACTGCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTT
GACTTGTACTTGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGG
GGATGCCAGTGCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTA
CGGGGGCTGCTCCTATGAAAGGGAGGTGAGGTTTCTGTGTATAAAACAAT
TGTAGTGCAAAAGGACCAGAACACACAGCGAAATCTGTACATCTCTGTTA
TT
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Coding sequence (CDS) from alignment at scaffold_7:82166..84117-

>mRNA_2854 ID=mRNA_2854|Name=jgi.p|Nanoce1779_2|583569|organism=Nannochloropsis oceanica|type=CDS|length=1869bp|location=Sequence derived from alignment at scaffold_7:82166..84117- (Nannochloropsis oceanica)
ATGATTAAGCCGAAGAATAATGACGAGATGAGTGCCGGGTCAAGTGCATC
CGAAATGTCATCTGTGCCTCCAGAGGCTGCCCCGACAATCAGCAGCGCCG
ATATTGGGGAGGAGGTTTTCTTCTTGGCGCGCAAGGAGCTGGATTTTGGG
GCCAACCATGCCCACACTGCCTTGCTTCTGGCAGATATTGACGATGACGG
GCAGCAGGAACTCATTGTGGGGTCGTTAGATGGCAAGTTGGCGGTGTATA
AGGGACTAGAGAGAACTGAGCCCTGGGCGCTGGCCACGGGACTGGGCATG
CTCAGGGTCTTCGCAACAGGCCGCGTTTGGCCGTGGTTGAAGGCCAAAAG
ACAACCACCGCAAGCATCAGCTATGAAATTTACGTCCACGGCAGCTTCGA
CCAAGGAGGAGGCGTGCGAATCGGAGGCAGAGGATGTGGATGTGCCCCCA
CGGGAGCATCCCTCACAACTTATTGCCGTGACGGTGGAAGGAGACCTGTA
TGTGTTTGACTTCCGCAATGCTCCACATTCGAACCTGTCGTCACCGTTGT
CCACTGTGCACTCAAATACAGTGTCCGAACAGCGTGCGTCACAATCAAAC
ATGAAGGATAACAATATTTTGCAATCTCCTTCACCGGCGCAAAATCCGCC
TCCCTGGAAGCTAGCCCCAATTCAGACGCTTTCCGTCGAGCCCAACGTAA
CGGCAGCATTAATTGTGGACGTGGATGGTGATGGTCATCAAGAATTGCTG
TTAGGGCGGATGGACGGCGTGGTTCAAGCCTTTGGCTGGCGGCTCCAGCC
TCTGCCGCCATCGCCCGGGGGCGCCGAGCAGGATGAAGAGGAGGAGGACG
ACGATAATAAAGAAGAAGAGAATGATAATGAGGAGGACGAATACCAGCAG
AACTACAAATATCCAGAGCCGGAGCTATATGAGAAGGGCACTGGCCATGT
GTCCTCATCCGTCGTGTCCTTGTCGACCGTGCGTTTCAAGGGACCGGAAG
GCAGCGCTCTATGTGTGGTGGCAGGTCTGGATACAGGCACCGTCGAAGTG
CTCCGGTGCCACTGGAGAGGAAATGTCGACGACAACGCTCCATTTTCGTC
CTTGGTAGATTTGGGGGTTGGGGGTGGACTACCATTACCGCACTGCGGTT
GGTCGGGCCCTTTGACTTGTTGCTCCTTGGGAAGTGGTGGGCCTAGTGGT
AGTAGGGGAGGCTTTGCGGTCGCCGGACTTGACGGTCGGTTGGCCATGGG
TGTCGTTGAACCGCCACGTAAGAGGCAGGAGCAGCAGCCCCCTGGGAGCG
ATGAAGATCTGGTATGGAGGACGGAATGGAGTCTCCAGACACCGCAGCCT
TTTTATGCCATCGCGCCTTTCAATGTGAGCCGGAATGATTTTGAGAAATC
CGGGTTTGCAGCGTGTGCGTGGAGCGGCTTCACGTGTTTAGTCACCGCCG
CTGGTACTCGTTCCAGCAGTGACGGGGTGTCGCCAGTAAATATCGCAGTG
TTTGATCCTTCGAAAATGTTTGTCCCACCGTTGCGGGGCTTTGTCGCTGG
GTGTTTCGGCGAGCACAACGAGCCTTGTTTGTTGTATAGCTGCGCGGATG
GGCACATTTTGGTCTTCCACGACCTGGAACGGCAATTGCAGCAGTTTCGG
GAAGTATCGCCGGATACCGAAGACGAGACAGCGGGGGCGGTGAGGCAACT
GCGCTCTGAAGAAGCCCAGAGGCTGGTCAAGGCTTGGGTTGACTTGTACT
TGGAGAGATCCGCGGACGATACGGGCACAGAGACGAAGGGGGATGCCAGT
GCCAAGAACAAGGGGATAAAGTCCGACAAGGGCGCACCTACGGGGGCTGC
TCCTATGAAAGGGAGGTGA
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Synonyms
Publications