jgi.p|Nanoce1779_2|564663, mRNA_2851 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|564663
Unique NamemRNA_2851
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length504
Alignment locationscaffold_7:77583..78086 +

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Properties
Property NameValue
TranscriptId564749
TrackFilteredModels2
ProteinId564663
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:77583..78086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564663gene_2851Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|564663mRNA_2851-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2851CDS_2851Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Nanoce1779_2|564663|organism=Nannochloropsis oceanica|type=mRNA|length=504bp
ATGGAAGCCCTCGCGGAGAAGGCAGGCATACTCTCTATCATTCGAAACTA
TTGCGGGGAGGAGGTGACTCTGGCAGAAAGTGGCTTCTCCATCACCCGGC
CAGGAGGGGAGGGGCTGGAGTGGCACGCGGATGGGAGGGAGGGGGAATGT
ACAGTCATCATGAGTTTGGATGACATAGGGAGGAACAAAGGGAGGTTGGG
GGTCGTGAGAAAGAGTCACTTGATGCTTGATAGGGATGGAAGTGAAGACT
TTGACCGGGACTTGATGGAGGTGGTGGAGAGGGCGCAAGCGACGGAGGCG
GAGGAGGGGGAGGGGGAGGGAGGGGTGGTCTGGTATGCGTATCGAAAGGG
TTGTCCGATCGTGTTCGACGCGAGGACGGTGCACGCTGCTGAGGGAAGTA
GTCGAGAAGGGACGGGAGCAAGGGAGGAGGGGGGGGAGGGAGGTAGGGAG
GGATGGGCGGAGTTCCGGGTGATCTTGTGGTGGATCTATAACGGGCATGG
CTGA
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protein sequence of jgi.p|Nanoce1779_2|564663

>mRNA_2851-protein ID=mRNA_2851-protein|Name=jgi.p|Nanoce1779_2|564663|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MEALAEKAGILSIIRNYCGEEVTLAESGFSITRPGGEGLEWHADGREGEC
TVIMSLDDIGRNKGRLGVVRKSHLMLDRDGSEDFDRDLMEVVERAQATEA
EEGEGEGGVVWYAYRKGCPIVFDARTVHAAEGSSREGTGAREEGGEGGRE
GWAEFRVILWWIYNGHG*
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mRNA from alignment at scaffold_7:77583..78086+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Nanoce1779_2|564663|organism=Nannochloropsis oceanica|type=mRNA|length=504bp|location=Sequence derived from alignment at scaffold_7:77583..78086+ (Nannochloropsis oceanica)
ATGGAAGCCCTCGCGGAGAAGGCAGGCATACTCTCTATCATTCGAAACTA
TTGCGGGGAGGAGGTGACTCTGGCAGAAAGTGGCTTCTCCATCACCCGGC
CAGGAGGGGAGGGGCTGGAGTGGCACGCGGATGGGAGGGAGGGGGAATGT
ACAGTCATCATGAGTTTGGATGACATAGGGAGGAACAAAGGGAGGTTGGG
GGTCGTGAGAAAGAGTCACTTGATGCTTGATAGGGATGGAAGTGAAGACT
TTGACCGGGACTTGATGGAGGTGGTGGAGAGGGCGCAAGCGACGGAGGCG
GAGGAGGGGGAGGGGGAGGGAGGGGTGGTCTGGTATGCGTATCGAAAGGG
TTGTCCGATCGTGTTCGACGCGAGGACGGTGCACGCTGCTGAGGGAAGTA
GTCGAGAAGGGACGGGAGCAAGGGAGGAGGGGGGGGAGGGAGGTAGGGAG
GGATGGGCGGAGTTCCGGGTGATCTTGTGGTGGATCTATAACGGGCATGG
CTGA
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Coding sequence (CDS) from alignment at scaffold_7:77583..78086+

>mRNA_2851 ID=mRNA_2851|Name=jgi.p|Nanoce1779_2|564663|organism=Nannochloropsis oceanica|type=CDS|length=504bp|location=Sequence derived from alignment at scaffold_7:77583..78086+ (Nannochloropsis oceanica)
ATGGAAGCCCTCGCGGAGAAGGCAGGCATACTCTCTATCATTCGAAACTA
TTGCGGGGAGGAGGTGACTCTGGCAGAAAGTGGCTTCTCCATCACCCGGC
CAGGAGGGGAGGGGCTGGAGTGGCACGCGGATGGGAGGGAGGGGGAATGT
ACAGTCATCATGAGTTTGGATGACATAGGGAGGAACAAAGGGAGGTTGGG
GGTCGTGAGAAAGAGTCACTTGATGCTTGATAGGGATGGAAGTGAAGACT
TTGACCGGGACTTGATGGAGGTGGTGGAGAGGGCGCAAGCGACGGAGGCG
GAGGAGGGGGAGGGGGAGGGAGGGGTGGTCTGGTATGCGTATCGAAAGGG
TTGTCCGATCGTGTTCGACGCGAGGACGGTGCACGCTGCTGAGGGAAGTA
GTCGAGAAGGGACGGGAGCAAGGGAGGAGGGGGGGGAGGGAGGTAGGGAG
GGATGGGCGGAGTTCCGGGTGATCTTGTGGTGGATCTATAACGGGCATGG
CTGA
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Synonyms
Publications