Properties
| Property Name | Value |
|---|
| TranscriptId | 583633 |
| Track | FilteredModels2 |
| ProteinId | 583547 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:72440..76249 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2850 ID=mRNA_2850|Name=jgi.p|Nanoce1779_2|583547|organism=Nannochloropsis oceanica|type=mRNA|length=1279bp
GTCCTGTCCACCACCTGCTGTCAATCAGGATGCTGGGGAGACGAAAAGCT
AGGGTACCAGCCCTGGCATTGACTTTCCTGGCAGCCTGTACCCAAGCCTT
CATCAGAATACCATCACCAGCATCAGGCAGAAGAGCCATCTCGCCACCAC
CACAACCCCCAGTCCTCAGCGCACCACTCCACACGACCCTCTTCGCCTCT
TCCGATGCCAACAGCCCCACTTCCACCTTTCCTGCACCTGCAGCCGGAAG
CGGGATGACCGAAGTCCTGGCCCGCAAAGCCAAAGAAAAAGAGGTCGCTG
CCTTCAAAGCCGCCCTGCCTCGCGCCCACCCCATCTTTGCCACTCTCGAA
GACCTGCCGCCCTCCCCCTCTAATCAATCCCAAATCCTGTACAAGGCCCT
TCAAAAACGCCACGGCAATACCTTGACCGTCATTGCCGAGTACTGGCGCA
AAGCACCCTTCTCCTTCTTGGGCTCCGTGCTGGAACCCAAAGCATACAGC
GAGATTTACCGGAAAGCGGGTGCCAGCGTCATTGCGATTAATGTTGACCC
TCTTACCGGTGGGTCTCTCCATGAGGATATCGCCCAGATGGTGGCAGAGC
AGGAGGCGGCGAGGGGGGGGGATGTGAGTGCCCCCATCCCGATCGTAGCC
TCGGATGTGGTGGTTGACCCTGTTCAGATTTCGAGGGCCAAGCTTGCTGG
AGCTGCAGGGATCACCCTCCGCTACTCGCTCAATCCTCCCGAGGCCACCA
CTGCTCTCATCAAGACGACCCATGCCTTGGGAATGGAACCTCTGGTCTTC
GTGAAGAGCGCAACGGAAGCAGCAGCAGCAACAGCAGCAGGAGCCCGGTT
ATTGTTTGTGTACGGGTGCACACGGGCACGAGGGATCGAGATGCGGAAGG
AATTACCGCTGCTGCTCCCCGACGGAGAGGAAGGGATTATGGTGGGATTT
GATCTGAGACGACCCCGTGAATTTCAGTACGGGTTGAATGAGGTGGAGGA
CGCGTGGGTGTTGAGAGACGAAGGATTTCACAGCGTCTATGCCTCTAATT
TGCTGTTTCAGACGCCGCTGGATGATGTGGTGGGGCCCAGCGCGGTGATC
AAGGCGTTGCGGGCCAAGGCATGTCATTTTATGGTGGACCCACTGGACTG
GATCGAGAAGGCAGTGACGGAGGGCACGAAGGAGACGCTGGGGGAGTTGT
TGGCCTAGACGGAAGGGGGAGAGGAAGGGAGGGAGGGAGGGATGAAGAGG
GGAGGGAAGGAGGGAGGGAGGGAGGGAGG back to topprotein sequence of jgi.p|Nanoce1779_2|583547 >mRNA_2850-protein ID=mRNA_2850-protein|Name=jgi.p|Nanoce1779_2|583547|organism=Nannochloropsis oceanica|type=polypeptide|length=393bp
MLGRRKARVPALALTFLAACTQAFIRIPSPASGRRAISPPPQPPVLSAPL
HTTLFASSDANSPTSTFPAPAAGSGMTEVLARKAKEKEVAAFKAALPRAH
PIFATLEDLPPSPSNQSQILYKALQKRHGNTLTVIAEYWRKAPFSFLGSV
LEPKAYSEIYRKAGASVIAINVDPLTGGSLHEDIAQMVAEQEAARGGDVS
APIPIVASDVVVDPVQISRAKLAGAAGITLRYSLNPPEATTALIKTTHAL
GMEPLVFVKSATEAAAATAAGARLLFVYGCTRARGIEMRKELPLLLPDGE
EGIMVGFDLRRPREFQYGLNEVEDAWVLRDEGFHSVYASNLLFQTPLDDV
VGPSAVIKALRAKACHFMVDPLDWIEKAVTEGTKETLGELLA* back to topmRNA from alignment at scaffold_7:72440..76249- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2850 ID=mRNA_2850|Name=jgi.p|Nanoce1779_2|583547|organism=Nannochloropsis oceanica|type=mRNA|length=3810bp|location=Sequence derived from alignment at scaffold_7:72440..76249- (Nannochloropsis oceanica)
GTCCTGTCCACCACCTGCTGTCAATCAGGATGCTGGGGAGACGAAAAGCT
AGGGTACCAGCCCTGGCATTGACTTTCCTGGCAGCCTGTACCCAAGCCTT
CATCAGAATACCATCACCAGCATCAGGTAAGTCGTATCGACGTGTGCGAC
GTGCGTTGTGCGCCGGTTGGTCTTTCCGTGCTGTCCTGAGTGTGCGAATG
AGAATCCTCCACTTCCGTGCGTTCTGCCTCTCTCTTCACCCTCTTCAATC
ATCAACAGGCAGAAGAGCCATCTCGCCACCACCACAACCCCCAGTCCTCA
GCGCACCACTCCACACGACCCTCTTCGCCTCTTCCGATGCCAACAGCCCC
ACTTCCACCTTTCCTGCACCTGCAGCCGGAAGCGGGATGACCGAAGTCCT
GGCCCGCAAAGCCAAAGAAAAAGAGGTCGCTGCCTTCAAAGCCGCCCTGC
CTCGCGCCCACCCCATCTTTGCCACTCTCGAAGACCTGCCGCCCTCCCCC
TCTAATCAATCCCAAATCCTGTACAAGGCCCTTCAAAAACGCCACGGCAA
TACCTTGACCGTCATTGCCGAGTACTGGCGCAAAGCACCCTTCTCCTTCT
TGGGCTCCGTGCTGGAACCCAAAGCATACAGCGAGATTTACCGGAAAGCG
GGTGCCAGCGTCATTGCGATTAATGTTGACCCTCTTACCGGTGGGTCTCT
CCATGAGGATATCGCCCAGATGGTGGCAGAGCAGGAGGCGGCGAGGGGGG
GGGATGTGAGTGCCCCCATCCCGATCGTAGCCTCGGATGTGGTGGTTGAC
CCTGTTCAGATTTCGAGGGCCAAGCTTGCTGGAGCTGCAGGCACGTCGTA
GTCAGGCTTGTTATGTTTCTCGTCCCTTAAGTGCTCGTCTTCTCTTTTGT
CCCCTCTCCCTCCCTTCGGCTGCTTCCAGCGATTTGTGCAGCTGGATATT
GATTGAGCATCTCTTAGGCAGTCACTCAACCCTTCCCTCCCTCCCTCCCT
CCTTCCCTCCCTCTCTCCCTCCCTCGATAGGGATCACCCTCCGCTACTCG
CTCAATCCTCCCGAGGCCACCACTGCTCTCATCAAGACGACCCATGCCTT
GGGAATGGAACCTCTGGTCTTCGTGAAGAGCGCAACGGAAGCAGCAGCAG
CAACAGCAGCAGGAGCCCGGTTATTGTTTGTGTACGGGTGCACACGGGCA
CGAGGGATCGAGATGCGGAAGGAATTACCGCTGCTGCTCCCCGACGGAGA
GGAAGGGATTATGGTGGGATTTGATCTGAGACGACCCCGTGAATTTCAGT
ACGGGTTGAATGAGGTGGAGGACGCGTGGGTGTTGAGAGACGAAGGATTT
CACAGCGTCTATGCCTCTAATTTGCTGTTTCAGACGCCGCTGGATGATGT
GGTGGGGCCCAGCGCGGTGATCAAGGCGTTGCGGGCCAAGGCATGTCATT
TTATGGTGGACCCACTGGACTGGATCGAGAAGGCAGTGACGGAGGGCACG
AAGGAGACGCTGGGGGAGTTGTTGGCCTAGACGGAAGGGGGAGAGGAAGG
GAGGGAGGGAGGGAGGGACGGGAGGGACGGAGGGAAGGAGGTTAGCGTCG
GTTTTGTGCTTGAAGTGAGAGGCGAGAGAGAGCAGACTGCGCGCATGTGC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGAGTGTGTGTGTGTCTGAGAGAGAGAGAGAGA
GAGAGAAAGAGAGGGAGAGAGAGAGAGAGAGCACAAAGGGCTGTGGGGGG
CGATTGCTCTCATCCATCGCATTAATCCAATTCAATACAGACTGCAAAGA
AAGATAGGAAAATAACAAGAACAAAAGAGAGAGACCTGCAATGCCGAGGT
GCGGTGCACACAAGCAACGGCCAAGCCAACGTCCGCGTTCACTCTACATT
CGAGTTGTTCTATCCACATTTGCTTTGGTCACAGCATGCAATTCGCTGCC
TTTCTTCATATTCTATGCCGTTGATATGCACCACCAAGCACCATTTATAA
ACATCCAGGATTCATTTAAACCAATAGTTTACTCCTTAATTGACAGCTCC
TGTTTCTCCCCTTCCTCCCTTTCTCCCTTTCCTCCTTCTCTCATAGAGCT
CTTTCTCTTGTCCAACTTCCTTTTCTGGATCGTCAACCCGTCCGTCAAAT
TCGCTACAGTACTTCTCCTCGACGAGGCAGTAATGAAAGGCGTGAGTGGG
TTGGGGCAGGAGAAAAAGAAGGGCTAGGACGAGGAATGGATGGAGGAAGA
GGAGAGGTTGATTCATGACAAGAGGCATGAACGGAAGCGAAAGGGGGGTA
AACTCAATTTCCTGCGGACATCAGCGAGGCACGGGGGCTACTCGCGAAGG
GCTGTGCAGATGTGCGGGTGTGGTGTGGATGGTCAGTTGAAGAACATTCC
GCGATGACGGCGAGGCGAGACGTACTCACGGAACGCGCCAACGGAACGCC
TTGGATTTGATGCACGATCAATTTGTTCACTTGCCTCGACTTCTACCCTT
CTACTCCTTTCCTCCCTGTTAACATTTTCCATATGTCTAACCTTCCCACA
TCCTTTCAAACATACACGGGTTCAACCCACTTCCGGCAGGCCCTCTCCAA
GTCCTACCATCATCATCATCCACCATGGGCGGCCTTGCCACCCTTCAAAC
CCTGGCGACCTTGACAGCGGTCACCCTCAATGTCTGCCCCATCTTTGACG
AAATCCCCGGTACGTGCTTTTGCCCATATCTGTGGAACGGTGTTTGTGGC
TATGCTGATGTCGTGGGTTGGGTTTTTAGAAGGAAAAGGCCCATGATTGT
GCAGAAAGGGAGCAAGCCGTTGCCCCCTCTCTCCCTCCCTGCCTCTTTCC
CCCACAATGTCACGCCTCATAAAGCTGATAAGAGAGATGAGACAGAAGAA
TGGCGGGTGGGAAAGAGAAGTGGGAAGGAGGTTGCAGGCTTGTCATTTAC
GGGTCACGGCATCCTTGGGTGGTACGCACACAGCTCCCTAGCCTCCTGCC
AGACTCCCTAAGCATACACCTCTACCCCACTTAAACAAGCCGAACGAAAG
GCAGGGCTTAAGGGTCTTACAACGTCTTCATCCACATCTTCCTTCCCTTC
CTCCCTCCCCTTTCCAACTAGCGATTAAACGCTCTCGCACCACAGGGGAC
CGTTCGCCTCTCCTTTTCGTCGCTATCTGGAGCAACGCCTGCCTATGGAT
CTTCTACGGCATACACACTCATGCCGTCCACCCAATTGCTACCACCAACA
TTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTGTTTTCCACTCCTAT
GCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCCTTCACACTGGCCGC
CTCCCTAATCACCTTAATTGGAGTATATGCCTTCATTTTCCCTTCCTCCT
CCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGTGTTGTCTTGTGACC
ATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCGCGGGCCTTACAGCT
CCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATTGGTCGGCACGTTAA
ACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAAATGATGCGTGGGTG
TACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTGTCTCAAGCAGCTGT
GTTCTTTTGGTTTGAAGTCGTTATGAAGAGGGGAGGGAAGGAGGGAGGGA
GGGAGGGAGG back to topCoding sequence (CDS) from alignment at scaffold_7:72440..76249- >mRNA_2850 ID=mRNA_2850|Name=jgi.p|Nanoce1779_2|583547|organism=Nannochloropsis oceanica|type=CDS|length=3537bp|location=Sequence derived from alignment at scaffold_7:72440..76249- (Nannochloropsis oceanica)
GGATCACCCTCCGCTACTCGCTCAATCCTCCCGAGGCCACCACTGCTCTC
ATCAAGACGACCCATGCCTTGGGAATGGAACCTCTGGTCTTCGTGAAGAG
CGCAACGGAAGCAGCAGCAGCAACAGCAGCAGGAGCCCGGTTATTGTTTG
TGTACGGGTGCACACGGGCACGAGGGATCGAGATGCGGAAGGAATTACCG
CTGCTGCTCCCCGACGGAGAGGAAGGGATTATGGTGGGATTTGATCTGAG
ACGACCCCGTGAATTTCAGTACGGGTTGAATGAGGTGGAGGACGCGTGGG
TGTTGAGAGACGAAGGATTTCACAGCGTCTATGCCTCTAATTTGCTGTTT
CAGACGCCGCTGGATGATGTGGTGGGGCCCAGCGCGGTGATCAAGGCGTT
GCGGGCCAAGGCATGTCATTTTATGGTGGACCCACTGGACTGGATCGAGA
AGGCAGTGACGGAGGGCACGAAGGAGACGCTGGGGGAGTTGTTGGCCTAG
GCAGAAGAGCCATCTCGCCACCACCACAACCCCCAGTCCTCAGCGCACCA
CTCCACACGACCCTCTTCGCCTCTTCCGATGCCAACAGCCCCACTTCCAC
CTTTCCTGCACCTGCAGCCGGAAGCGGGATGACCGAAGTCCTGGCCCGCA
AAGCCAAAGAAAAAGAGGTCGCTGCCTTCAAAGCCGCCCTGCCTCGCGCC
CACCCCATCTTTGCCACTCTCGAAGACCTGCCGCCCTCCCCCTCTAATCA
ATCCCAAATCCTGTACAAGGCCCTTCAAAAACGCCACGGCAATACCTTGA
CCGTCATTGCCGAGTACTGGCGCAAAGCACCCTTCTCCTTCTTGGGCTCC
GTGCTGGAACCCAAAGCATACAGCGAGATTTACCGGAAAGCGGGTGCCAG
CGTCATTGCGATTAATGTTGACCCTCTTACCGGTGGGTCTCTCCATGAGG
ATATCGCCCAGATGGTGGCAGAGCAGGAGGCGGCGAGGGGGGGGGATGTG
AGTGCCCCCATCCCGATCGTAGCCTCGGATGTGGTGGTTGACCCTGTTCA
GATTTCGAGGGCCAAGCTTGCTGGAGCTGCAGATGCTGGGGAGACGAAAA
GCTAGGGTACCAGCCCTGGCATTGACTTTCCTGGCAGCCTGTACCCAAGC
CTTCATCAGAATACCATCACCAGCATCAGGGATCACCCTCCGCTACTCGC
TCAATCCTCCCGAGGCCACCACTGCTCTCATCAAGACGACCCATGCCTTG
GGAATGGAACCTCTGGTCTTCGTGAAGAGCGCAACGGAAGCAGCAGCAGC
AACAGCAGCAGGAGCCCGGTTATTGTTTGTGTACGGGTGCACACGGGCAC
GAGGGATCGAGATGCGGAAGGAATTACCGCTGCTGCTCCCCGACGGAGAG
GAAGGGATTATGGTGGGATTTGATCTGAGACGACCCCGTGAATTTCAGTA
CGGGTTGAATGAGGTGGAGGACGCGTGGGTGTTGAGAGACGAAGGATTTC
ACAGCGTCTATGCCTCTAATTTGCTGTTTCAGACGCCGCTGGATGATGTG
GTGGGGCCCAGCGCGGTGATCAAGGCGTTGCGGGCCAAGGCATGTCATTT
TATGGTGGACCCACTGGACTGGATCGAGAAGGCAGTGACGGAGGGCACGA
AGGAGACGCTGGGGGAGTTGTTGGCCTAGGCAGAAGAGCCATCTCGCCAC
CACCACAACCCCCAGTCCTCAGCGCACCACTCCACACGACCCTCTTCGCC
TCTTCCGATGCCAACAGCCCCACTTCCACCTTTCCTGCACCTGCAGCCGG
AAGCGGGATGACCGAAGTCCTGGCCCGCAAAGCCAAAGAAAAAGAGGTCG
CTGCCTTCAAAGCCGCCCTGCCTCGCGCCCACCCCATCTTTGCCACTCTC
GAAGACCTGCCGCCCTCCCCCTCTAATCAATCCCAAATCCTGTACAAGGC
CCTTCAAAAACGCCACGGCAATACCTTGACCGTCATTGCCGAGTACTGGC
GCAAAGCACCCTTCTCCTTCTTGGGCTCCGTGCTGGAACCCAAAGCATAC
AGCGAGATTTACCGGAAAGCGGGTGCCAGCGTCATTGCGATTAATGTTGA
CCCTCTTACCGGTGGGTCTCTCCATGAGGATATCGCCCAGATGGTGGCAG
AGCAGGAGGCGGCGAGGGGGGGGGATGTGAGTGCCCCCATCCCGATCGTA
GCCTCGGATGTGGTGGTTGACCCTGTTCAGATTTCGAGGGCCAAGCTTGC
TGGAGCTGCAGATGCTGGGGAGACGAAAAGCTAGGGTACCAGCCCTGGCA
TTGACTTTCCTGGCAGCCTGTACCCAAGCCTTCATCAGAATACCATCACC
AGCATCAGGGATCACCCTCCGCTACTCGCTCAATCCTCCCGAGGCCACCA
CTGCTCTCATCAAGACGACCCATGCCTTGGGAATGGAACCTCTGGTCTTC
GTGAAGAGCGCAACGGAAGCAGCAGCAGCAACAGCAGCAGGAGCCCGGTT
ATTGTTTGTGTACGGGTGCACACGGGCACGAGGGATCGAGATGCGGAAGG
AATTACCGCTGCTGCTCCCCGACGGAGAGGAAGGGATTATGGTGGGATTT
GATCTGAGACGACCCCGTGAATTTCAGTACGGGTTGAATGAGGTGGAGGA
CGCGTGGGTGTTGAGAGACGAAGGATTTCACAGCGTCTATGCCTCTAATT
TGCTGTTTCAGACGCCGCTGGATGATGTGGTGGGGCCCAGCGCGGTGATC
AAGGCGTTGCGGGCCAAGGCATGTCATTTTATGGTGGACCCACTGGACTG
GATCGAGAAGGCAGTGACGGAGGGCACGAAGGAGACGCTGGGGGAGTTGT
TGGCCTAGGCAGAAGAGCCATCTCGCCACCACCACAACCCCCAGTCCTCA
GCGCACCACTCCACACGACCCTCTTCGCCTCTTCCGATGCCAACAGCCCC
ACTTCCACCTTTCCTGCACCTGCAGCCGGAAGCGGGATGACCGAAGTCCT
GGCCCGCAAAGCCAAAGAAAAAGAGGTCGCTGCCTTCAAAGCCGCCCTGC
CTCGCGCCCACCCCATCTTTGCCACTCTCGAAGACCTGCCGCCCTCCCCC
TCTAATCAATCCCAAATCCTGTACAAGGCCCTTCAAAAACGCCACGGCAA
TACCTTGACCGTCATTGCCGAGTACTGGCGCAAAGCACCCTTCTCCTTCT
TGGGCTCCGTGCTGGAACCCAAAGCATACAGCGAGATTTACCGGAAAGCG
GGTGCCAGCGTCATTGCGATTAATGTTGACCCTCTTACCGGTGGGTCTCT
CCATGAGGATATCGCCCAGATGGTGGCAGAGCAGGAGGCGGCGAGGGGGG
GGGATGTGAGTGCCCCCATCCCGATCGTAGCCTCGGATGTGGTGGTTGAC
CCTGTTCAGATTTCGAGGGCCAAGCTTGCTGGAGCTGCAGATGCTGGGGA
GACGAAAAGCTAGGGTACCAGCCCTGGCATTGACTTTCCTGGCAGCCTGT
ACCCAAGCCTTCATCAGAATACCATCACCAGCATCAG back to top
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