jgi.p|Nanoce1779_2|539731, mRNA_2849 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539731
Unique NamemRNA_2849
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length638
Alignment locationscaffold_7:72514..73563 -

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Properties
Property NameValue
TranscriptId539817
TrackFilteredModels2
ProteinId539731
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:72514..73563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539731gene_2849Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539731mRNA_2849-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2849CDS_2849Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2849 ID=mRNA_2849|Name=jgi.p|Nanoce1779_2|539731|organism=Nannochloropsis oceanica|type=mRNA|length=638bp
CAGGCCCTCTCCAAGTCCTACCATCATCATCATCCACCATGGGCGGCCTT
GCCACCCTTCAAACCCTGGCGACCTTGACAGCGGTCACCCTCAATGTCTG
CCCCATCTTTGACGAAATCCCCGCGATTAAACGCTCTCGCACCACAGGGG
ACCGTTCGCCTCTCCTTTTCGTCGCTATCTGGAGCAACGCCTGCCTATGG
ATCTTCTACGGCATACACACTCATGCCGTCCACCCAATTGCTACCACCAA
CATTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTGTTTTCCACTCCT
ATGCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCCTTCACACTGGCC
GCCTCCCTAATCACCTTAATTGGAGTATATGCCTTCATTTTCCCTTCCTC
CTCCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGTGTTGTCTTGTGA
CCATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCGCGGGCCTTACAG
CTCCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATTGGTCGGCACGTT
AAACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAAATGATGCGTGGG
TGTACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTG
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protein sequence of jgi.p|Nanoce1779_2|539731

>mRNA_2849-protein ID=mRNA_2849-protein|Name=jgi.p|Nanoce1779_2|539731|organism=Nannochloropsis oceanica|type=polypeptide|length=200bp
MGGLATLQTLATLTAVTLNVCPIFDEIPAIKRSRTTGDRSPLLFVAIWSN
ACLWIFYGIHTHAVHPIATTNITGFLSGSYFLSVFHSYAPPLAKVRLARA
FTLAASLITLIGVYAFIFPSSSPSKTQHKLGAMCCLVTISVYAAPLSSVA
RALQLQSSKPISLFFALVGTLNAVLWSGYGLLTNDAWVYAPSVIGTILSV
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mRNA from alignment at scaffold_7:72514..73563-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2849 ID=mRNA_2849|Name=jgi.p|Nanoce1779_2|539731|organism=Nannochloropsis oceanica|type=mRNA|length=1050bp|location=Sequence derived from alignment at scaffold_7:72514..73563- (Nannochloropsis oceanica)
CAGGCCCTCTCCAAGTCCTACCATCATCATCATCCACCATGGGCGGCCTT
GCCACCCTTCAAACCCTGGCGACCTTGACAGCGGTCACCCTCAATGTCTG
CCCCATCTTTGACGAAATCCCCGGTACGTGCTTTTGCCCATATCTGTGGA
ACGGTGTTTGTGGCTATGCTGATGTCGTGGGTTGGGTTTTTAGAAGGAAA
AGGCCCATGATTGTGCAGAAAGGGAGCAAGCCGTTGCCCCCTCTCTCCCT
CCCTGCCTCTTTCCCCCACAATGTCACGCCTCATAAAGCTGATAAGAGAG
ATGAGACAGAAGAATGGCGGGTGGGAAAGAGAAGTGGGAAGGAGGTTGCA
GGCTTGTCATTTACGGGTCACGGCATCCTTGGGTGGTACGCACACAGCTC
CCTAGCCTCCTGCCAGACTCCCTAAGCATACACCTCTACCCCACTTAAAC
AAGCCGAACGAAAGGCAGGGCTTAAGGGTCTTACAACGTCTTCATCCACA
TCTTCCTTCCCTTCCTCCCTCCCCTTTCCAACTAGCGATTAAACGCTCTC
GCACCACAGGGGACCGTTCGCCTCTCCTTTTCGTCGCTATCTGGAGCAAC
GCCTGCCTATGGATCTTCTACGGCATACACACTCATGCCGTCCACCCAAT
TGCTACCACCAACATTACTGGCTTCCTGTCTGGCTCCTACTTTCTTTCTG
TTTTCCACTCCTATGCCCCTCCCCTTGCTAAGGTCCGCCTTGCCCGTGCC
TTCACACTGGCCGCCTCCCTAATCACCTTAATTGGAGTATATGCCTTCAT
TTTCCCTTCCTCCTCCCCGAGCAAAACCCAACACAAGCTCGGTGCCATGT
GTTGTCTTGTGACCATCAGCGTTTACGCCGCACCTCTCTCGTCCGTGGCG
CGGGCCTTACAGCTCCAATCCTCCAAACCCATCTCCTTGTTCTTCGCATT
GGTCGGCACGTTAAACGCCGTCTTATGGTCAGGCTATGGCCTCTTGACAA
ATGATGCGTGGGTGTACGCGCCTAGTGTTATTGGTACGATCCTCTCGGTG
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Coding sequence (CDS) from alignment at scaffold_7:72514..73563-

>mRNA_2849 ID=mRNA_2849|Name=jgi.p|Nanoce1779_2|539731|organism=Nannochloropsis oceanica|type=CDS|length=1200bp|location=Sequence derived from alignment at scaffold_7:72514..73563- (Nannochloropsis oceanica)
CGATTAAACGCTCTCGCACCACAGGGGACCGTTCGCCTCTCCTTTTCGTC
GCTATCTGGAGCAACGCCTGCCTATGGATCTTCTACGGCATACACACTCA
TGCCGTCCACCCAATTGCTACCACCAACATTACTGGCTTCCTGTCTGGCT
CCTACTTTCTTTCTGTTTTCCACTCCTATGCCCCTCCCCTTGCTAAGGTC
CGCCTTGCCCGTGCCTTCACACTGGCCGCCTCCCTAATCACCTTAATTGG
AGTATATGCCTTCATTTTCCCTTCCTCCTCCCCGAGCAAAACCCAACACA
AGCTCGGTGCCATGTGTTGTCTTGTGACCATCAGCGTTTACGCCGCACCT
CTCTCGTCCGTGGCGCGGGCCTTACAGCTCCAATCCTCCAAACCCATCTC
CTTGTTCTTCGCATTGGTCGGCACGTTAAACGCCGTCTTATGGTCAGGCT
ATGGCCTCTTGACAAATGATGCGTGGGTGTACGCGCCTAGTGTTATTGGT
ACGATCCTCTCGGTGATGGGCGGCCTTGCCACCCTTCAAACCCTGGCGAC
CTTGACAGCGGTCACCCTCAATGTCTGCCCCATCTTTGACGAAATCCCCG
CGATTAAACGCTCTCGCACCACAGGGGACCGTTCGCCTCTCCTTTTCGTC
GCTATCTGGAGCAACGCCTGCCTATGGATCTTCTACGGCATACACACTCA
TGCCGTCCACCCAATTGCTACCACCAACATTACTGGCTTCCTGTCTGGCT
CCTACTTTCTTTCTGTTTTCCACTCCTATGCCCCTCCCCTTGCTAAGGTC
CGCCTTGCCCGTGCCTTCACACTGGCCGCCTCCCTAATCACCTTAATTGG
AGTATATGCCTTCATTTTCCCTTCCTCCTCCCCGAGCAAAACCCAACACA
AGCTCGGTGCCATGTGTTGTCTTGTGACCATCAGCGTTTACGCCGCACCT
CTCTCGTCCGTGGCGCGGGCCTTACAGCTCCAATCCTCCAAACCCATCTC
CTTGTTCTTCGCATTGGTCGGCACGTTAAACGCCGTCTTATGGTCAGGCT
ATGGCCTCTTGACAAATGATGCGTGGGTGTACGCGCCTAGTGTTATTGGT
ACGATCCTCTCGGTGATGGGCGGCCTTGCCACCCTTCAAACCCTGGCGAC
CTTGACAGCGGTCACCCTCAATGTCTGCCCCATCTTTGACGAAATCCCCG
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Synonyms
Publications