jgi.p|Nanoce1779_2|669702, mRNA_2848 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669702
Unique Name	mRNA_2848
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1297
Alignment location	scaffold_7:70294..71727 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669788
Track	FilteredModels2
ProteinId	669702

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:70294..71727 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669702	gene_2848	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669702	mRNA_2848-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2848	CDS_2848	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:70294..71727+
coding sequence from alignment at scaffold_7:70294..71727+

mRNA sequence

>mRNA_2848 ID=mRNA_2848|Name=jgi.p|Nanoce1779_2|669702|organism=Nannochloropsis oceanica|type=mRNA|length=1297bp
ATGTCCGGAAACAATGATTATGGAGGAGACGACCCCTTTGCCATCCGAAT
CCTCCAACCCAATCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCC
TCACGATCGAAGAAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGT
GCCTTTGGTCGGATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAAC
AAGTCGAGAAATGAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGG
TGGACTCGCAAACAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATG
ATGCGCAACGTGGCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCA
CTGGGTGCAGACCAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCG
TCCCCTTCCACGGCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCT
TTCGTCTACGACTGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCT
CGCGGGCAACACGTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTA
CTTCCCTCCCTCGCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAG
GCAACCAAGGGCTGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAAC
GAGGATTGCATATTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTT
CTCTGCTGCACGAGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACG
CTCTTGGTCTCGACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGAT
GGAGGTGTGGTTGTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGG
AGAAGGTGGATTTCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCC
TACTCCTTGTTGGAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGA
GGAGGAAAAGAAGCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGG
GGCGATGGGAGGAGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGA
AGCTTGCAGGGAGTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGG
GTTAAGAGGCCTGGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGT
GCCTGGACGAGGAGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCG
AACGTCGAGAGGTTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGG
GGAGCGATTGTTGGGGAGTGGTTTTTTTGACGATGATTAGGAGGGAG

protein sequence of jgi.p|Nanoce1779_2|669702

>mRNA_2848-protein ID=mRNA_2848-protein|Name=jgi.p|Nanoce1779_2|669702|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MSGNNDYGGDDPFAIRILQPNQLRIIRVIGEQRLTIEEETEKRDGSGPRG
AFGRIRNKKSTEGQSQTSREMKTMGVGVRLFEAVDSQTGERLIMKEFLPM
MRNVAMGEVELYRYLHHWVQTNHPSWQPSDIPIVPFHGYLQTGPEVEDPS
FVYDWAERFGSSVPPPLAGNTWVVLRTPGLITLTSLPRLALEREGGGGGK
ATKGWLGKLLFPDVYKTRIAYLKNLMAGAIDALSLLHEAGVCHGALSPST
LLVSTADLREGGREGGMEVWLSDLGFAKNVLSQEKVDFEGLVKRDWKGCS
YSLLEVFLRLMAEDEEEEEKKQGEGLGGVEGGLGRWEEGFGLPFAQVTAG
SLQGVTEARFGGDVGVGLRGLVSNERVFKKAVECLDEEGGAGWVLLNDMA
NVERLMMGEERGVYGVGERLLGSGFFDDD*

mRNA from alignment at scaffold_7:70294..71727+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2848 ID=mRNA_2848|Name=jgi.p|Nanoce1779_2|669702|organism=Nannochloropsis oceanica|type=mRNA|length=1434bp|location=Sequence derived from alignment at scaffold_7:70294..71727+ (Nannochloropsis oceanica)
ATGTCCGGAAACAATGATTATGGAGGAGACGACCCCTTTGCCATCCGAAT
CCTCCAACCCAATCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCC
TCACGATCGAAGAAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGT
GCCTTTGGTCGGATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAAC
AAGTCGAGAAATGAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGG
TGGACTCGCAAACAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATG
ATGCGCAACGTGGCCATGGGCGAGGTGGAGCTTTACCGGTAATAATCAAG
ACTGGATGTCACATACTGTTTCTTCTCTCTGATCTGCTGAGTTTAAAGTT
CTTAAATCGTGACTCAAATTGTTGTCTCAATACTCAACCACCCTTCCCTC
CCTCACTCCCTCCGTCCCTCCCTAGGTACCTGCACCACTGGGTGCAGACC
AACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCACGG
CTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACGACT
GGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAACACG
TGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCCTCG
CCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGGGCT
GGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCATAT
TTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCACGA
GGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCTCGA
CGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGGTTG
TCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGATTT
CGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGTTGG
AGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAGAAG
CAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGAGGA
GGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGGGAG
TGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGCCTG
GTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGAGGA
GGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGAGGT
TGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTGTTG
GGGAGTGGTTTTTTTGACGATGATTAGGAGGGAG

Coding sequence (CDS) from alignment at scaffold_7:70294..71727+

>mRNA_2848 ID=mRNA_2848|Name=jgi.p|Nanoce1779_2|669702|organism=Nannochloropsis oceanica|type=CDS|length=2580bp|location=Sequence derived from alignment at scaffold_7:70294..71727+ (Nannochloropsis oceanica)
ATGTCCGGAAACAATGATTATGGAGGAGACGACCCCTTTGCCATCCGAAT
CCTCCAACCCAATCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCC
TCACGATCGAAGAAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGT
GCCTTTGGTCGGATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAAC
AAGTCGAGAAATGAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGG
TGGACTCGCAAACAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATG
ATGCGCAACGTGGCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCA
CTGGGTGCAGACCAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCG
TCCCCTTCCACGGCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCT
TTCGTCTACGACTGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCT
CGCGGGCAACACGTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTA
CTTCCCTCCCTCGCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAG
GCAACCAAGGGCTGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAAC
GAGGATTGCATATTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTT
CTCTGCTGCACGAGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACG
CTCTTGGTCTCGACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGAT
GGAGGTGTGGTTGTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGG
AGAAGGTGGATTTCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCC
TACTCCTTGTTGGAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGA
GGAGGAAAAGAAGCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGG
GGCGATGGGAGGAGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGA
AGCTTGCAGGGAGTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGG
GTTAAGAGGCCTGGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGT
GCCTGGACGAGGAGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCG
AACGTCGAGAGGTTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGG
GGAGCGATTGTTGGGGAGTGGTTTTTTTGACGATGATTAGATGTCCGGAA
ACAATGATTATGGAGGAGACGACCCCTTTGCCATCCGAATCCTCCAACCC
AATCAACTTCGCATCATCCGGGTCATTGGAGAGCAACGCCTCACGATCGA
AGAAGAGACCGAAAAGCGGGATGGTTCAGGTCCACGGGGTGCCTTTGGTC
GGATTCGCAACAAAAAGTCGACTGAGGGACAATCACAAACAAGTCGAGAA
ATGAAAACCATGGGCGTGGGCGTTCGATTGTTCGAGGCGGTGGACTCGCA
AACAGGAGAACGGCTTATTATGAAGGAATTCCTGCCTATGATGCGCAACG
TGGCCATGGGCGAGGTGGAGCTTTACCGGTACCTGCACCACTGGGTGCAG
ACCAACCACCCCTCCTGGCAGCCGTCCGATATCCCCATCGTCCCCTTCCA
CGGCTACCTTCAAACAGGTCCTGAAGTGGAAGACCCTTCTTTCGTCTACG
ACTGGGCAGAACGTTTTGGTTCCTCCGTCCCTCCCCCCCTCGCGGGCAAC
ACGTGGGTCGTGTTACGGACACCGGGGCTCATCACGCTTACTTCCCTCCC
TCGCCTGGCCTTGGAACGCGAAGGAGGAGGGGGAGGGAAGGCAACCAAGG
GCTGGTTGGGGAAATTATTGTTCCCTGATGTGTATAAAACGAGGATTGCA
TATTTGAAAAACTTAATGGCAGGTGCGATCGACGCACTTTCTCTGCTGCA
CGAGGCCGGGGTCTGTCATGGCGCTCTCTCTCCCTCTACGCTCTTGGTCT
CGACGGCCGATTTGAGGGAGGGAGGGAGGGAGGGAGGGATGGAGGTGTGG
TTGTCGGATTTGGGCTTTGCGAAGAATGTGCTGAGTCAGGAGAAGGTGGA
TTTCGAGGGCCTGGTGAAGAGGGATTGGAAGGGGTGTTCCTACTCCTTGT
TGGAGGTTTTCTTGAGGCTCATGGCCGAGGACGAGGAGGAGGAGGAAAAG
AAGCAGGGAGAGGGCCTCGGAGGGGTTGAAGGGGGGTTGGGGCGATGGGA
GGAGGGGTTTGGATTGCCTTTTGCGCAGGTGACGGCGGGAAGCTTGCAGG
GAGTGACCGAGGCGAGATTTGGGGGCGATGTAGGGGTAGGGTTAAGAGGC
CTGGTGAGCAATGAGAGGGTGTTTAAGAAGGCCGTGGAGTGCCTGGACGA
GGAGGGGGGCGCGGGGTGGGTGTTATTGAATGACATGGCGAACGTCGAGA
GGTTGATGATGGGGGAAGAGAGAGGAGTGTACGGTGTGGGGGAGCGATTG
TTGGGGAGTGGTTTTTTTGACGATGATTAG

Synonyms

Publications