jgi.p|Nanoce1779_2|664010, mRNA_2845 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|664010
Unique NamemRNA_2845
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1399
Alignment locationscaffold_7:62907..64552 -

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Properties
Property NameValue
TranscriptId664096
TrackFilteredModels2
ProteinId664010
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:62907..64552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664010gene_2845Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|664010mRNA_2845-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2845CDS_2845Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2845 ID=mRNA_2845|Name=jgi.p|Nanoce1779_2|664010|organism=Nannochloropsis oceanica|type=mRNA|length=1399bp
ATGGACCCCGAGCTTGTCCGCATCCAGACCCTCCTGATGGAGCACCAGAA
AACTGCCGCACGCCTGACAGCGGCGGAAGAGGCCCGAACTCTTGTCTATT
ATTCGCAGGGTCTGGGGGTGTTGGGCACGAACTCCCAGGCGTCGTCCCCG
TTGGCGGGTTACCCGGCTTCGGCCATGGTGGGCTTTGCGGTGGATGAGCA
GGGACGGCCGATTTTTTCTTTTTCAAGCATTTCAACGCACAAGCAGGATT
TGATCAAGGACCCGCGGGGAAGTTTCACGGTCGCAAGCAAGGACTTCAAG
GGGTTGGACGACGGCCGCGTGTCCTTCATCGGGGACATCAAAAAAGTGCC
CGAGGGGGAGGAGACGACCAAGGCGCGAGAGATGTACCTGGCTAAGCACC
CGGGGCACTTCTGGGTCGATTTTGGTGATTTTGATTTCTTCCGCATGGAG
ACCATTGCCGCGGTCCGTTACAACGGCGGTTTCGCCCGTTTCGGCGCCCT
TGAGCCCGAAGACTACTTGGCCGCTCAGCCTGATGCTTGCCAGGCGTATG
CCACCCCCGTGATGTCGCACATGAACGACGATCACGAGGAGGCCACCAAG
GCGATGATCCAGCATTACATCGGTTTGGAGGTGACGAGTGCGAAGATCGT
GAGCCTGGATCGGCTGGGGATGATGGTTAAGATTGAGAGTAAATGGGGGG
GGAGCAAGGTGCGGCTACCGTTTACGCGGGAATGCACGGACCGAAAGGTC
TGTAAAGAGATCATTGTGGAGATGACTCAGGCGTCGGCGGGGGCCAGGGT
GGGGGGGAAGGAGAAGGGGGAAGAGAAGGAGGAGAAGAAGTAGCGAAGAG
GGATTGATGAAGGGAGGGAAGGAAAGAGGGATGGAGGGGGGGATGGAGGG
GGGGATGGAGGGAGGCTGGAGTGTAATATACGTAGAGGAGTATGGGGAGT
ATGAGGAGGAGGAGAAAACGAAGAAGAAAGGGAATCAAGAGGAAATTATG
TTTGGAGAGAACGAGAGAGACGTAGGCATGAGGGGGATGCACTGAGGAAG
GAGGGATGGGAAAAATTAGTTCGAGATTGAGAAGGGTGATAGCAGTACAT
AGAAGCTTGCGATGGTCTGGGGCTTGTTTCTTTTCCTTCTTCTTCTCTTG
TCTGTTCTTCTGTATGTTGTCTGTTCCATTCATTCTTTCTTTCTCTACCC
CTCCACCACCTCACATATTCCTCTGACTCGTATCATCTTTGTGCTATTGC
TGCCATACTGGAACCTTTCCTATAATGGTCATCCTATCAATCTTAATTCT
CCTCCTCGCACCATCAGTAGGTGTAGTTTAGAGAGAATATCGGGCTGGCT
ATTCTTCTCATTCGCATCATCATCCTCATCCTGTCTCTTTTGCTAGCTA
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protein sequence of jgi.p|Nanoce1779_2|664010

>mRNA_2845-protein ID=mRNA_2845-protein|Name=jgi.p|Nanoce1779_2|664010|organism=Nannochloropsis oceanica|type=polypeptide|length=281bp
MDPELVRIQTLLMEHQKTAARLTAAEEARTLVYYSQGLGVLGTNSQASSP
LAGYPASAMVGFAVDEQGRPIFSFSSISTHKQDLIKDPRGSFTVASKDFK
GLDDGRVSFIGDIKKVPEGEETTKAREMYLAKHPGHFWVDFGDFDFFRME
TIAAVRYNGGFARFGALEPEDYLAAQPDACQAYATPVMSHMNDDHEEATK
AMIQHYIGLEVTSAKIVSLDRLGMMVKIESKWGGSKVRLPFTRECTDRKV
CKEIIVEMTQASAGARVGGKEKGEEKEEKK*
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mRNA from alignment at scaffold_7:62907..64552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2845 ID=mRNA_2845|Name=jgi.p|Nanoce1779_2|664010|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_7:62907..64552- (Nannochloropsis oceanica)
ATGGACCCCGAGCTTGTCCGCATCCAGACCCTCCTGATGGAGCACCAGAA
AACTGCCGCACGCCTGACAGCGGCGGAAGAGGCCCGAACTCTTGTCTATT
ATTCGCAGGGTCTGGGGGTGTTGGGCACGAACTCCCAGGCGTCGTCCCCG
TTGGCGGGTTACCCGGCTTCGGCCATGGTGGGCTTTGCGGTGGATGAGCA
GGGACGGCCGATTTTTTCTTTTTCAAGCATTTCAACGCACAAGCAGGATT
TGATCAAGGACCCGCGGGGAAGTTTCACGGTCGCAAGCAAGGTGCGGATT
GCAGATGTTTCTCGATTTGTTCAGTTTATTATTATTTATTAAAGTAGGCG
CTGAAACTACCTTTTTATGCATTCGATTTTCCTTTGACACTCACCTTTTT
CCCGTTCCCCGTCCCCCTTCCCCCAGGACTTCAAGGGGTTGGACGACGGC
CGCGTGTCCTTCATCGGGGACATCAAAAAAGTGCCCGAGGGGGAGGAGAC
GACCAAGGCGCGAGAGATGTACCTGGCTAAGCACCCGGGGCACTTCTGGG
TCGATTTTGGTACGTTTTTTTGAAGAGGTATATATGTATGCTTTGTGTGT
TTTCCCTTGAAATAGGAACTACTATGTATTAATTTATTCCTGTTTCGTTT
TTATTTGTGATCCAATTACAGGTGATTTTGATTTCTTCCGCATGGAGACC
ATTGCCGCGGTCCGTTACAACGGCGGTTTCGCCCGTTTCGGCGCCCTTGA
GCCCGAAGACTACTTGGCCGCTCAGCCTGATGCTTGCCAGGCGTATGCCA
CCCCCGTGATGTCGCACATGAACGACGATCACGAGGAGGCCACCAAGGCG
ATGATCCAGCATTACATCGGTTTGGAGGTGACGAGTGCGAAGATCGTGAG
CCTGGATCGGCTGGGGATGATGGTTAAGATTGAGAGTAAATGGGGGGGGA
GCAAGGTGCGGCTACCGTTTACGCGGGAATGCACGGACCGAAAGGTCTGT
AAAGAGATCATTGTGGAGATGACTCAGGCGTCGGCGGGGGCCAGGGTGGG
GGGGAAGGAGAAGGGGGAAGAGAAGGAGGAGAAGAAGTAGCGAAGAGGGA
TTGATGAAGGGAGGGAAGGAAAGAGGGATGGAGGGGGGGATGGAGGGGGG
GATGGAGGGAGGCTGGAGTGTAATATACGTAGAGGAGTATGGGGAGTATG
AGGAGGAGGAGAAAACGAAGAAGAAAGGGAATCAAGAGGAAATTATGTTT
GGAGAGAACGAGAGAGACGTAGGCATGAGGGGGATGCACTGAGGAAGGAG
GGATGGGAAAAATTAGTTCGAGATTGAGAAGGGTGATAGCAGTACATAGA
AGCTTGCGATGGTCTGGGGCTTGTTTCTTTTCCTTCTTCTTCTCTTGTCT
GTTCTTCTGTATGTTGTCTGTTCCATTCATTCTTTCTTTCTCTACCCCTC
CACCACCTCACATATTCCTCTGACTCGTATCATCTTTGTGCTATTGCTGC
CATACTGGAACCTTTCCTATAATGGTCATCCTATCAATCTTAATTCTCCT
CCTCGCACCATCAGTAGGTGTAGTTTAGAGAGAATATCGGGCTGGCTATT
CTTCTCATTCGCATCATCATCCTCATCCTGTCTCTTTTGCTAGCTA
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Coding sequence (CDS) from alignment at scaffold_7:62907..64552-

>mRNA_2845 ID=mRNA_2845|Name=jgi.p|Nanoce1779_2|664010|organism=Nannochloropsis oceanica|type=CDS|length=2529bp|location=Sequence derived from alignment at scaffold_7:62907..64552- (Nannochloropsis oceanica)
GTGATTTTGATTTCTTCCGCATGGAGACCATTGCCGCGGTCCGTTACAAC
GGCGGTTTCGCCCGTTTCGGCGCCCTTGAGCCCGAAGACTACTTGGCCGC
TCAGCCTGATGCTTGCCAGGCGTATGCCACCCCCGTGATGTCGCACATGA
ACGACGATCACGAGGAGGCCACCAAGGCGATGATCCAGCATTACATCGGT
TTGGAGGTGACGAGTGCGAAGATCGTGAGCCTGGATCGGCTGGGGATGAT
GGTTAAGATTGAGAGTAAATGGGGGGGGAGCAAGGTGCGGCTACCGTTTA
CGCGGGAATGCACGGACCGAAAGGTCTGTAAAGAGATCATTGTGGAGATG
ACTCAGGCGTCGGCGGGGGCCAGGGTGGGGGGGAAGGAGAAGGGGGAAGA
GAAGGAGGAGAAGAAGTAGGACTTCAAGGGGTTGGACGACGGCCGCGTGT
CCTTCATCGGGGACATCAAAAAAGTGCCCGAGGGGGAGGAGACGACCAAG
GCGCGAGAGATGTACCTGGCTAAGCACCCGGGGCACTTCTGGGTCGATTT
TGATGGACCCCGAGCTTGTCCGCATCCAGACCCTCCTGATGGAGCACCAG
AAAACTGCCGCACGCCTGACAGCGGCGGAAGAGGCCCGAACTCTTGTCTA
TTATTCGCAGGGTCTGGGGGTGTTGGGCACGAACTCCCAGGCGTCGTCCC
CGTTGGCGGGTTACCCGGCTTCGGCCATGGTGGGCTTTGCGGTGGATGAG
CAGGGACGGCCGATTTTTTCTTTTTCAAGCATTTCAACGCACAAGCAGGA
TTTGATCAAGGACCCGCGGGGAAGTTTCACGGTCGCAAGCAAGGTGATTT
TGATTTCTTCCGCATGGAGACCATTGCCGCGGTCCGTTACAACGGCGGTT
TCGCCCGTTTCGGCGCCCTTGAGCCCGAAGACTACTTGGCCGCTCAGCCT
GATGCTTGCCAGGCGTATGCCACCCCCGTGATGTCGCACATGAACGACGA
TCACGAGGAGGCCACCAAGGCGATGATCCAGCATTACATCGGTTTGGAGG
TGACGAGTGCGAAGATCGTGAGCCTGGATCGGCTGGGGATGATGGTTAAG
ATTGAGAGTAAATGGGGGGGGAGCAAGGTGCGGCTACCGTTTACGCGGGA
ATGCACGGACCGAAAGGTCTGTAAAGAGATCATTGTGGAGATGACTCAGG
CGTCGGCGGGGGCCAGGGTGGGGGGGAAGGAGAAGGGGGAAGAGAAGGAG
GAGAAGAAGTAGGACTTCAAGGGGTTGGACGACGGCCGCGTGTCCTTCAT
CGGGGACATCAAAAAAGTGCCCGAGGGGGAGGAGACGACCAAGGCGCGAG
AGATGTACCTGGCTAAGCACCCGGGGCACTTCTGGGTCGATTTTGATGGA
CCCCGAGCTTGTCCGCATCCAGACCCTCCTGATGGAGCACCAGAAAACTG
CCGCACGCCTGACAGCGGCGGAAGAGGCCCGAACTCTTGTCTATTATTCG
CAGGGTCTGGGGGTGTTGGGCACGAACTCCCAGGCGTCGTCCCCGTTGGC
GGGTTACCCGGCTTCGGCCATGGTGGGCTTTGCGGTGGATGAGCAGGGAC
GGCCGATTTTTTCTTTTTCAAGCATTTCAACGCACAAGCAGGATTTGATC
AAGGACCCGCGGGGAAGTTTCACGGTCGCAAGCAAGGTGATTTTGATTTC
TTCCGCATGGAGACCATTGCCGCGGTCCGTTACAACGGCGGTTTCGCCCG
TTTCGGCGCCCTTGAGCCCGAAGACTACTTGGCCGCTCAGCCTGATGCTT
GCCAGGCGTATGCCACCCCCGTGATGTCGCACATGAACGACGATCACGAG
GAGGCCACCAAGGCGATGATCCAGCATTACATCGGTTTGGAGGTGACGAG
TGCGAAGATCGTGAGCCTGGATCGGCTGGGGATGATGGTTAAGATTGAGA
GTAAATGGGGGGGGAGCAAGGTGCGGCTACCGTTTACGCGGGAATGCACG
GACCGAAAGGTCTGTAAAGAGATCATTGTGGAGATGACTCAGGCGTCGGC
GGGGGCCAGGGTGGGGGGGAAGGAGAAGGGGGAAGAGAAGGAGGAGAAGA
AGTAGGACTTCAAGGGGTTGGACGACGGCCGCGTGTCCTTCATCGGGGAC
ATCAAAAAAGTGCCCGAGGGGGAGGAGACGACCAAGGCGCGAGAGATGTA
CCTGGCTAAGCACCCGGGGCACTTCTGGGTCGATTTTGATGGACCCCGAG
CTTGTCCGCATCCAGACCCTCCTGATGGAGCACCAGAAAACTGCCGCACG
CCTGACAGCGGCGGAAGAGGCCCGAACTCTTGTCTATTATTCGCAGGGTC
TGGGGGTGTTGGGCACGAACTCCCAGGCGTCGTCCCCGTTGGCGGGTTAC
CCGGCTTCGGCCATGGTGGGCTTTGCGGTGGATGAGCAGGGACGGCCGAT
TTTTTCTTTTTCAAGCATTTCAACGCACAAGCAGGATTTGATCAAGGACC
CGCGGGGAAGTTTCACGGTCGCAAGCAAG
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Synonyms
Publications