jgi.p|Nanoce1779_2|388379, mRNA_2844 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|388379
Unique Name	mRNA_2844
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1676
Alignment location	scaffold_7:59886..62756 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	388465
Track	FilteredModels2
ProteinId	388379

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:59886..62756 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|388379	gene_2844	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|388379	mRNA_2844-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2844	CDS_2844	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:59886..62756+
coding sequence from alignment at scaffold_7:59886..62756+

mRNA sequence

>mRNA_2844 ID=mRNA_2844|Name=jgi.p|Nanoce1779_2|388379|organism=Nannochloropsis oceanica|type=mRNA|length=1676bp
ATTCCACGCACAACTTGGAGGATCACCCCGCAGTTGCGACGTGGCGACGG
TATCTGTGGCTTGTGCCGTCGAACCCGGCCATGTCTTCAAGATATGGATA
AAGTCGCCGAAGAAAAAGTGAACTGGCAATGCCGCAGGGGCCGGAGGAAA
ATTGGAAAGTCTTGTCTTGGCCGCTAGCGCCTGTCGGTTCTCCGGTGCCT
TCCTGTGCCCTCTTGTCCGCTTCCCGACGCAAGATCAACGCTTAAACCCA
ACACAACGCAGGTCATTTGACCTGCTAGAAGGCCACGACACGAACAGAGG
GCGGTATCATTATTATCACAGAGATGCAAGAGGACGCTATCAAGCTGCCC
TTGCAATGCGGAGAAGGGCAGCAACTGCACGCGCATATGCCGGAGTATGG
AAATACCCCGCACAGTCAGTCGGCAGAAGACCTGGCAGGCAATATTAAGG
AACTATGTCGAGAAAGTGGGAGAGGTCATGAAGAAGGAAGGAGAAGAACA
ACAGAAGGGGTTGCAGGAGAAGGAGGATCAGCAGTAGGGAGAAAGGGAGG
AAGTATGAATGTCGCTGATCCCCCGCGAGACACGCCCTCGACTTCGGTGA
TTGCCTCATGCATCCACCGATTTCGGACACAACCTCCTATGTCACGGGAG
GGACGGCGGCAGCGACAGCAGCAGCAGCGACAGCGGCAGAATTACCAGGG
GGACAATGCCGGTGATGGTGTCGGGGGAGGGGATCTCGGAACAAGGGAGG
AGGATTTTTGGTGGCAACCTCAGCACCAGCAGCAGCTGCATCAACAACCA
CTTCAAGAGCAGCAGGAGTGCTTGCTTCCTATGCAAGTAATAGATAAAGA
GGTCGATCTCGATGGTTCTGCGAAAGTCTCGTTGGACAAGCGCAAGGCTG
TTCACGGCGACCCGCCGCTGTTACCCCCCTCTTCATTCTTCCCTCCCTCC
TTCTTCCCCCTGCCCTTGACATCAGCAGGAGATGTCATCGTCCCTTCCAG
GCAAGAATTTATTGGTGGTGCGGGCTACCCTGACGCTGAAGAGCAGCAGC
AGCAGCCGCAAGACGTCGATTATGAAGAAGGAAGATGGGAACACCCACCA
CCACCAGCAGCAGCAGCAACAACAGCACTAGCAGTAGCAACAGCAGCAGT
AGGACTAGCAGCAGCACCATTAGCATGTAGAGGAGGAGGAAACGATGCCT
CTCCAACAGCAAATGGCCCGCCGGCAGATAGGCTGCCCCTAGCCCAGACA
GAGATGGGCTTGCCCACCGAGGACATGGAGGGGGAAAGGAAGATGTGGAG
GAAGAGGTGAGGATGGATGATGGTGGGTTTTACAAGCACCGGAAGCCATT
GTCGACTGATAGCATAGATAGTCTAGGAATGGAGGAGAAAGAAAGGGAGG
AAGAGTTGGCGATGCTGTGGTTGGAGGAGGAAAGGGAGGAGGACGAGGGG
GAGAGAGGAAAGGAACTGGGGGAATATGATAATGATGGGGTCGTACGGGC
GTTGAGGGAGAGGAGGAGAGAGCTGCTCGTTGAGCTGGCCTTGGCGAATA
GAAGAGAGGATGCGGAGAGAGGAGGAAATGGAGGGGGTGAGGGTGGTCGG
GTGTGGTGAGCAGCAGTGTGCGGTACGTGTCTGTCATTGTAGATTACGAA
GAAACGAATAGTGGTTTAGACGTCCA

protein sequence of jgi.p|Nanoce1779_2|388379

>mRNA_2844-protein ID=mRNA_2844-protein|Name=jgi.p|Nanoce1779_2|388379|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MQEDAIKLPLQCGEGQQLHAHMPEYGNTPHSQSAEDLAGNIKELCRESGR
GHEEGRRRTTEGVAGEGGSAVGRKGGSMNVADPPRDTPSTSVIASCIHRF
RTQPPMSREGRRQRQQQQRQRQNYQGDNAGDGVGGGDLGTREEDFWWQPQ
HQQQLHQQPLQEQQECLLPMQVIDKEVDLDGSAKVSLDKRKAVHGDPPLL
PPSSFFPPSFFPLPLTSAGDVIVPSRQEFIGGAGYPDAEEQQQQPQDVDY
EEGRWEHPPPPAAAATTALAVATAAVGLAAAPLACRGGGNDASPTANGPP
ADRLPLAQTEMGLPTEDMEGERKMWRKR*

mRNA from alignment at scaffold_7:59886..62756+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2844 ID=mRNA_2844|Name=jgi.p|Nanoce1779_2|388379|organism=Nannochloropsis oceanica|type=mRNA|length=2871bp|location=Sequence derived from alignment at scaffold_7:59886..62756+ (Nannochloropsis oceanica)
ATTCCACGCACAACTTGGAGGATCACCCCGCAGTTGCGACGTGGCGACGG
TATCTGTGGCTTGTGCCGTCGAACCCGGCCATGTCTTCAAGATATGGATA
AAGTCGCCGAAGAAAAAGTGAACTGGTGAGATGGATATCGTCGTTTTGGT
CGGTCTGTTTGTGGCTTTGGCGTGCATCACATTTTATTACGCTCCTCTCA
ACATGGCACTGCCTCCTGCCGTCTTCGATCACCTACTACCCACAGGCAAT
GCCGCAGGGGCCGGAGGAAAATTGGAAAGTCTTGTCTTGGCCGCTAGCGC
CTGTCGGTTCTCCGGTGCCTTCCTGTGCCCTCTTGTCCGCTTCCCGACGC
AAGATCAACGCTTAAACCCAACACAACGCAGGTCATTTGACCTGCTAGAA
GGCCACGACACGAACAGAGGGCGGTATCATTATTATCACAGAGATGCAAG
AGGACGCTATCAAGCTGCCCTTGCAATGCGGAGAAGGGCAGCAACTGCAC
GCGCATATGCCGGAGTATGGAAATACCCCGCACAGTCAGTCGGCAGAAGA
CCTGGCAGGCAATATTAAGGAACTATGTCGAGAAAGTGGGAGAGGTCATG
AAGAAGGAAGGAGAAGAACAACAGAAGGGGTTGCAGGAGAAGGAGGATCA
GCAGTAGGGAGAAAGGGAGGAAGTATGAATGTCGCTGATCCCCCGCGAGA
CACGCCCTCGACTTCGGTGATTGCCTCATGCATCCACCGATTTCGGACAC
AACCTCCTATGTCACGGGAGGGACGGCGGCAGCGACAGCAGCAGCAGCGA
CAGCGGCAGAATTACCAGGGGGACAATGCCGGTGATGGTGTCGGGGGAGG
GGATCTCGGAACAAGGGAGGAGGATTTTTGGTGGCAACCTCAGCACCAGC
AGCAGCTGCATCAACAACCACTTCAAGAGCAGCAGGAGTGCTTGCTTCCT
ATGCAAGTAATAGATAAAGAGGTCGATCTCGATGGTTCTGCGAAAGTCTC
GTTGGACAAGCGCAAGGCTGTTCACGGCGACCCGCCGCTGTTACCCCCCT
CTTCATTCTTCCCTCCCTCCTTCTTCCCCCTGCCCTTGACATCAGCAGGA
GATGTCATCGTCCCTTCCAGGCAAGAATTTATTGGTGGTGCGGGCTACCC
TGACGCTGAAGAGCAGCAGCAGCAGCCGCAAGACGTCGATTATGAAGAAG
GAAGATGGGAACACCCACCACCACCAGCAGCAGCAGCAACAACAGCACTA
GCAGTAGCAACAGCAGCAGTAGGACTAGCAGCAGCACCATTAGCATGTAG
AGGAGGAGGAAACGATGCCTCTCCAACAGCAAATGGCCCGCCGGCAGATA
GGCTGCCCCTAGCCCAGACAGAGATGGGCTTGCCCACCGAGGACATGATG
GATGAAGGAGAAGTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCTCT
CCTGCCCACCCCTTATGCTCCCTCCATTCCAGCCGCCACTGTGACACCTC
CTTGCTTGGAGCCGCGGTCCATGGCCACCACGACATCCTGCTTCTCTCCT
TCCTCTACCATGATCCCCTGCTCCTCCCCCCCCTCCAACCGACCAGCCGT
ATTGCGAGGAGTCCAAGGAGGGGAGGGAGGGCAGGAGGGAGGAAGAGCGA
TCAACCGACCTTCCTCCCCAGTGCCGCCAGCGTTGTCGATCTCAATGGCG
TGTATCGGGAATATCAAGGAGGAAACATTACCGGTTTTTTATAGGCAGCA
ATTACTGGCCTTTGAAAGGCAGGAGAAGAGGGAGGCGGCGCTGAGAGAGA
AGAGGAAGGTGTCAGCAGTAGCAGCAGCAGCAGCAGCAGCAGAAGTAGCA
GCAGCAGCAGCAGCAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAG
GAGGATTGGCAAAGGCGGATGGGTGGGGGAGGAACGCGGTGTCGCACTTG
AGGGTGAGAACGACTCTCGGTGGCAGCGATGGTACATGGCTCTCCCCTCC
CTCCATGTATTCCTTCAATGCCCGCCGCTCCAGTCCACCTTATAACAACA
TGCGGCGACGCGCAGCACCCAGCAGCTGCTGCAGCAGGAGCAGTAGTAAG
AACAACAAGAGCAACAGCAGTCTTTCAAGCCCTCCCACGGCCTCCTCCTC
ATCCTCATCTTCCTCCTCTCACCACCTCACCCCCCTTCTCTATCGCTCAA
CCCCCTTAAACACCAGAGGATTTCCTGGGAACAGTCTTTCCTCCCCCATC
TACTCCTCTTCCTACTCCTCAGTAGCCTGGCCCCCCTCTCCGCATTCTCT
ACAAGTAGTTCAAAATCTCGTCCAACAAATTGTGCATCAACACCTCTTTG
ACCTTCCTCTCATCTATGAAACGTCTCCTTTCGACCAGCAGCAGCAGCAG
CAGTACGAGGGAGGGAGGGAGGGAGGGGGAAAGGAAGATGTGGAGGAAGA
GGTGAGGATGGATGATGGTGGGTTTTACAAGCACCGGAAGCCATTGTCGA
CTGATAGCATAGATAGTCTAGGAATGGAGGAGAAAGAAAGGGAGGAAGAG
TTGGCGATGCTGTGGTTGGAGGAGGAAAGGGAGGAGGACGAGGGGGAGAG
AGGAAAGGAACTGGGGGAATATGATAATGATGGGGTCGTACGGGCGTTGA
GGGAGAGGAGGAGAGAGCTGCTCGTTGAGCTGGCCTTGGCGAATAGAAGA
GAGGATGCGGAGAGAGGAGGAAATGGAGGGGGTGAGGGTGGTCGGGTGTG
GTGAGCAGCAGTGTGCGGTACGTGTCTGTCATTGTAGATTACGAAGAAAC
GAATAGTGGTTTAGACGTCCA

Coding sequence (CDS) from alignment at scaffold_7:59886..62756+

>mRNA_2844 ID=mRNA_2844|Name=jgi.p|Nanoce1779_2|388379|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_7:59886..62756+ (Nannochloropsis oceanica)
ATGCAAGAGGACGCTATCAAGCTGCCCTTGCAATGCGGAGAAGGGCAGCA
ACTGCACGCGCATATGCCGGAGTATGGAAATACCCCGCACAGTCAGTCGG
CAGAAGACCTGGCAGGCAATATTAAGGAACTATGTCGAGAAAGTGGGAGA
GGTCATGAAGAAGGAAGGAGAAGAACAACAGAAGGGGTTGCAGGAGAAGG
AGGATCAGCAGTAGGGAGAAAGGGAGGAAGTATGAATGTCGCTGATCCCC
CGCGAGACACGCCCTCGACTTCGGTGATTGCCTCATGCATCCACCGATTT
CGGACACAACCTCCTATGTCACGGGAGGGACGGCGGCAGCGACAGCAGCA
GCAGCGACAGCGGCAGAATTACCAGGGGGACAATGCCGGTGATGGTGTCG
GGGGAGGGGATCTCGGAACAAGGGAGGAGGATTTTTGGTGGCAACCTCAG
CACCAGCAGCAGCTGCATCAACAACCACTTCAAGAGCAGCAGGAGTGCTT
GCTTCCTATGCAAGTAATAGATAAAGAGGTCGATCTCGATGGTTCTGCGA
AAGTCTCGTTGGACAAGCGCAAGGCTGTTCACGGCGACCCGCCGCTGTTA
CCCCCCTCTTCATTCTTCCCTCCCTCCTTCTTCCCCCTGCCCTTGACATC
AGCAGGAGATGTCATCGTCCCTTCCAGGCAAGAATTTATTGGTGGTGCGG
GCTACCCTGACGCTGAAGAGCAGCAGCAGCAGCCGCAAGACGTCGATTAT
GAAGAAGGAAGATGGGAACACCCACCACCACCAGCAGCAGCAGCAACAAC
AGCACTAGCAGTAGCAACAGCAGCAGTAGGACTAGCAGCAGCACCATTAG
CATGTAGAGGAGGAGGAAACGATGCCTCTCCAACAGCAAATGGCCCGCCG
GCAGATAGGCTGCCCCTAGCCCAGACAGAGATGGGCTTGCCCACCGAGGA
CATGGAGGGGGAAAGGAAGATGTGGAGGAAGAGGTGAATGCAAGAGGACG
CTATCAAGCTGCCCTTGCAATGCGGAGAAGGGCAGCAACTGCACGCGCAT
ATGCCGGAGTATGGAAATACCCCGCACAGTCAGTCGGCAGAAGACCTGGC
AGGCAATATTAAGGAACTATGTCGAGAAAGTGGGAGAGGTCATGAAGAAG
GAAGGAGAAGAACAACAGAAGGGGTTGCAGGAGAAGGAGGATCAGCAGTA
GGGAGAAAGGGAGGAAGTATGAATGTCGCTGATCCCCCGCGAGACACGCC
CTCGACTTCGGTGATTGCCTCATGCATCCACCGATTTCGGACACAACCTC
CTATGTCACGGGAGGGACGGCGGCAGCGACAGCAGCAGCAGCGACAGCGG
CAGAATTACCAGGGGGACAATGCCGGTGATGGTGTCGGGGGAGGGGATCT
CGGAACAAGGGAGGAGGATTTTTGGTGGCAACCTCAGCACCAGCAGCAGC
TGCATCAACAACCACTTCAAGAGCAGCAGGAGTGCTTGCTTCCTATGCAA
GTAATAGATAAAGAGGTCGATCTCGATGGTTCTGCGAAAGTCTCGTTGGA
CAAGCGCAAGGCTGTTCACGGCGACCCGCCGCTGTTACCCCCCTCTTCAT
TCTTCCCTCCCTCCTTCTTCCCCCTGCCCTTGACATCAGCAGGAGATGTC
ATCGTCCCTTCCAGGCAAGAATTTATTGGTGGTGCGGGCTACCCTGACGC
TGAAGAGCAGCAGCAGCAGCCGCAAGACGTCGATTATGAAGAAGGAAGAT
GGGAACACCCACCACCACCAGCAGCAGCAGCAACAACAGCACTAGCAGTA
GCAACAGCAGCAGTAGGACTAGCAGCAGCACCATTAGCATGTAGAGGAGG
AGGAAACGATGCCTCTCCAACAGCAAATGGCCCGCCGGCAGATAGGCTGC
CCCTAGCCCAGACAGAGATGGGCTTGCCCACCGAGGACATGGAGGGGGAA
AGGAAGATGTGGAGGAAGAGGTGA

Synonyms

Publications