jgi.p|Nanoce1779_2|669699, mRNA_2843 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669699
Unique NamemRNA_2843
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1293
Alignment locationscaffold_7:59049..60461 +

Link to JBrowse

Properties
Property NameValue
TranscriptId669785
TrackFilteredModels2
ProteinId669699
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:59049..60461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669699gene_2843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669699mRNA_2843-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2843CDS_2843Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2843 ID=mRNA_2843|Name=jgi.p|Nanoce1779_2|669699|organism=Nannochloropsis oceanica|type=mRNA|length=1293bp
TGTCTGTGTCTTTTTTGGGTGTCTGCTCTCATTTGCCGGTATGTTATTCC
ATCGCTCAGGTGTGGTATAGGTTGCAGTATTAGTTCTCCCCTGCTTCATA
CATTGTCCATACCCCTTGTCAATGTCGACTTGGTTTGTTATTCACCATCT
TTCCCCTGTGCATCCTCCCTCCTTCCTCGTCTCCTTTCCTGTCTTTGTTT
TCACCTCTCCCTCTTCCTCCTTCCCCCTGAAGCTTTACACCCTTCTTCCT
TTCGTCCATTGTATCTCTTCTTCTTGTATCCAAAGACAACGTCAGGAAAT
ATCTCATCTCCTTCCGCACCACCAATCCGCCATCCCCAACCTCATCATAG
CTTATGCTACAGGTGATGTCCCTCTGACACAGCTCTCTCTTCCGGACAAT
CCTCAGATACTACTTACTTCCCCTTCCGCTCCTCCTCCTCCTCCTCCACT
TTTCTCCACTACTACTTCTATCCCCACATTGTTCTTACCATATCACGTGA
CGACTTGTCCTTGAACTCCCGCGTCAATCAAGAACCGGGACTCGCGCACT
GCCGCTATGCGAAAAGGTCGACACCATGCGATGGTACATACGTCCGATCT
ACCAGATAATCCAAGCTGCTTGCACTGCAGGCTGGATGCGAATGCATCCC
CATCCACGGGGGGGGGGGAATGGCGAACGTCACAGGAAAAACAGTTCGCC
GCTTAATCTCGCCGCAAATAGATAACTTTGGCCCGACCGGCCACACGTCA
TCCTTTCCCCAACAGGGCACAATTTTGTGAACCGCCTCTCATTAAATTGG
AGTGGACGTGAACTAGGTGGGTGATTTTTCGGTGGACATTCCACGCACAA
CTTGGAGGATCACCCCGCAGTTGCGACGTGGCGACGGTATCTGTGGCTTG
TGCCGTCGAACCCGGCCATGTCTTCAAGATATGGATAAAGTCGCCGAAGA
AAAAGTGAACTGGCAATGCCGCAGGGGCCGGAGGAAAATTGGAAAGTCTT
GTCTTGGCCGCTAGCGCCTGTCGGTTCTCCGGTGCCTTCCTGTGCCCTCT
TGTCCGCTTCCCGACGCAAGATCAACGCTTAAACCCAACACAACGCAGGT
CATTTGACCTGCTAGAAGGCCACGACACGAACAGAGGGCGGTATCATTAT
TATCACAGAGATGCAAGAGGACGCTATCAAGCTGCCCTTGCAATGCGGAG
AAGGGCAGCAACTGCACGCGCATATGCCGGAGTATGGAAATACCCCGCAC
AGTCAGTCGGCAGAAGACCTGGCAGGCAATATTAAGGAACTAT
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protein sequence of jgi.p|Nanoce1779_2|669699

>mRNA_2843-protein ID=mRNA_2843-protein|Name=jgi.p|Nanoce1779_2|669699|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MSTWFVIHHLSPVHPPSFLVSFPVFVFTSPSSSFPLKLYTLLPFVHCISS
SCIQRQRQEISHLLPHHQSAIPNLIIAYATGDVPLTQLSLPDNPQILLTS
PSAPPPPPPLFSTTTSIPTLFLPYHVTTCP*
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mRNA from alignment at scaffold_7:59049..60461+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2843 ID=mRNA_2843|Name=jgi.p|Nanoce1779_2|669699|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp|location=Sequence derived from alignment at scaffold_7:59049..60461+ (Nannochloropsis oceanica)
TGTCTGTGTCTTTTTTGGGTGTCTGCTCTCATTTGCCGGTATGTTATTCC
ATCGCTCAGGTGTGGTATAGGTTGCAGTATTAGTTCTCCCCTGCTTCATA
CATTGTCCATACCCCTTGTCAATGTCGACTTGGTTTGTTATTCACCATCT
TTCCCCTGTGCATCCTCCCTCCTTCCTCGTCTCCTTTCCTGTCTTTGTTT
TCACCTCTCCCTCTTCCTCCTTCCCCCTGAAGCTTTACACCCTTCTTCCT
TTCGTCCATTGTATCTCTTCTTCTTGTATCCAAAGACAACGTCAGGAAAT
ATCTCATCTCCTTCCGCACCACCAATCCGCCATCCCCAACCTCATCATAG
CTTATGCTACAGGTGATGTCCCTCTGACACAGCTCTCTCTTCCGGACAAT
CCTCAGATACTACTTACTTCCCCTTCCGCTCCTCCTCCTCCTCCTCCACT
TTTCTCCACTACTACTTCTATCCCCACATTGTTCTTACCATATCACGTGA
CGACTTGTCCTTGAACTCCCGCGTCAATCAAGAACCGGGACTCGCGCACT
GCCGCTATGCGAAAAGGTCGACACCATGCGATGGTACATACGTCCGATCT
ACCAGATAATCCAAGCTGCTTGCACTGCAGGCTGGATGCGAATGCATCCC
CATCCACGGGGGGGGGGGAATGGCGAACGTCACAGGAAAAACAGTTCGCC
GCTTAATCTCGCCGCAAATAGATAACTTTGGCCCGACCGGCCACACGTCA
TCCTTTCCCCAACAGGGCACAATTTTGTGAACCGCCTCTCATTAAATTGG
AGTGGACGTGAACTAGGTGGGTGATTTTTCGGTGGACATTCCACGCACAA
CTTGGAGGATCACCCCGCAGTTGCGACGTGGCGACGGTATCTGTGGCTTG
TGCCGTCGAACCCGGCCATGTCTTCAAGATATGGATAAAGTCGCCGAAGA
AAAAGTGAACTGGTGAGATGGATATCGTCGTTTTGGTCGGTCTGTTTGTG
GCTTTGGCGTGCATCACATTTTATTACGCTCCTCTCAACATGGCACTGCC
TCCTGCCGTCTTCGATCACCTACTACCCACAGGCAATGCCGCAGGGGCCG
GAGGAAAATTGGAAAGTCTTGTCTTGGCCGCTAGCGCCTGTCGGTTCTCC
GGTGCCTTCCTGTGCCCTCTTGTCCGCTTCCCGACGCAAGATCAACGCTT
AAACCCAACACAACGCAGGTCATTTGACCTGCTAGAAGGCCACGACACGA
ACAGAGGGCGGTATCATTATTATCACAGAGATGCAAGAGGACGCTATCAA
GCTGCCCTTGCAATGCGGAGAAGGGCAGCAACTGCACGCGCATATGCCGG
AGTATGGAAATACCCCGCACAGTCAGTCGGCAGAAGACCTGGCAGGCAAT
ATTAAGGAACTAT
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Coding sequence (CDS) from alignment at scaffold_7:59049..60461+

>mRNA_2843 ID=mRNA_2843|Name=jgi.p|Nanoce1779_2|669699|organism=Nannochloropsis oceanica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_7:59049..60461+ (Nannochloropsis oceanica)
ATGTCGACTTGGTTTGTTATTCACCATCTTTCCCCTGTGCATCCTCCCTC
CTTCCTCGTCTCCTTTCCTGTCTTTGTTTTCACCTCTCCCTCTTCCTCCT
TCCCCCTGAAGCTTTACACCCTTCTTCCTTTCGTCCATTGTATCTCTTCT
TCTTGTATCCAAAGACAACGTCAGGAAATATCTCATCTCCTTCCGCACCA
CCAATCCGCCATCCCCAACCTCATCATAGCTTATGCTACAGGTGATGTCC
CTCTGACACAGCTCTCTCTTCCGGACAATCCTCAGATACTACTTACTTCC
CCTTCCGCTCCTCCTCCTCCTCCTCCACTTTTCTCCACTACTACTTCTAT
CCCCACATTGTTCTTACCATATCACGTGACGACTTGTCCTTGA
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Synonyms
Publications