jgi.p|Nanoce1779_2|669698, mRNA_2842 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669698
Unique Name	mRNA_2842
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1236
Alignment location	scaffold_7:56475..58364 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669784
Track	FilteredModels2
ProteinId	669698

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:56475..58364 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669698	gene_2842	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669698	mRNA_2842-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2842	CDS_2842	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:56475..58364+
coding sequence from alignment at scaffold_7:56475..58364+

mRNA sequence

>mRNA_2842 ID=mRNA_2842|Name=jgi.p|Nanoce1779_2|669698|organism=Nannochloropsis oceanica|type=mRNA|length=1236bp
GTTTGTGTGCACTTCTGTGTTATGTTCTATGGTTTTGGTGATTTGTTGGC
CTTCGCCTTCCACCCTTTTCAGCTTGGACCCCCCAACGGCCCATCCATCC
GATGTCTCCTTCAATGCAAAAAAAAATCATTTTGACCCCCTAAACCCTCC
ATGAGTTGAAATTCATGTTCATACGCCCTTGGTTTCTTCAATTCCGCCTT
AAAGATAACCAAATGTGCTGATCACAGAAAGGCGGTTTGGGGCTGGTCAG
TCAGGTGGCGTTCGAGCCCTAAAGGGGGGGGGGCGGGCTTGCCCGACGTC
TTCGACGCACCTCAGGCACTGGCAATGGCTTTGCTTTCTCTTGATTCTGT
AGTGGTTGCGGCGCGTCCCAACCCAACCATCACGCCTGCATGCACCGTCA
TAATCACCACGTGTGGGCATGCGGCGATTGTGGTCCGCGCCGAGCTGACG
GCGGGCGCCCTGGTGGGTATGAAGACCAAGGAGGGGAGCAGCAACAGTAG
CAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCGGTAGTCGGGATGGGG
GTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGCAAACTCTTCACCCTG
ACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGCGATTGTTGCCGCCAT
CTATGCCCGCAAGCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATAATGG
CAAACGCCCGACACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAGCAAC
AGCAACGACCACAACAACAACAACGACAACGAAATTAACAAGAACAACAA
CAACGGTGGCAACAACGATAACAACGATAGCGTTATCAGAACAATTGAAG
CATCAGCAGCTACAGGGGCATTGCCACGAGTGTTGGAGACGGGATTGGAA
GCACTCAGGGATTTTGATGAGAATGGACGACGGAATCGCAAGTCAGCTGC
AGCAGTGTCGTCTTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAGGAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGAGGAG
GATGAGATGGAAGAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTGGATT
AGGAGGGAGGAAGAGGCAGAAGACTATGGCGGATGTCGTGCAGCTGCATC
GGGATTTATCGGACCTTCAACGGACGAGGACGGAATTAAGGTGGTTGCTG
GGACAGGTGGAGAGGTTGGAGTATGAGAGTCTGTAG

protein sequence of jgi.p|Nanoce1779_2|669698

>mRNA_2842-protein ID=mRNA_2842-protein|Name=jgi.p|Nanoce1779_2|669698|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MALLSLDSVVVAARPNPTITPACTVIITTCGHAAIVVRAELTAGALVGMK
TKEGSSNSSSGMMGGSGAGTGSRDGGGRITKKKKLKGKLFTLTTGPLPQP
KFKAIVAAIYARKQAEAEELRVKIMANARHAEEEAYLRSSSNSNDHNNNN
DNEINKNNNNGGNNDNNDSVIRTIEASAATGALPRVLETGLEALRDFDEN
GRRNRKSAAAVSSSLVAGVRGGGGGGGGRGVGGGQADSSDEEDEMEEGKG
GREGMPAGLGGRKRQKTMADVVQLHRDLSDLQRTRTELRWLLGQVERLEY
ESL*

mRNA from alignment at scaffold_7:56475..58364+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2842 ID=mRNA_2842|Name=jgi.p|Nanoce1779_2|669698|organism=Nannochloropsis oceanica|type=mRNA|length=1890bp|location=Sequence derived from alignment at scaffold_7:56475..58364+ (Nannochloropsis oceanica)
GTTTGTGTGCACTTCTGTGTTATGTTCTATGGTTTTGGTGATTTGTTGGC
CTTCGCCTTCCACCCTTTTCAGCTTGGACCCCCCAACGGCCCATCCATCC
GATGTCTCCTTCAATGCAAAAAAAAATCATTTTGACCCCCTAAACCCTCC
ATGAGTTGAAATTCATGTTCATACGCCCTTGGTTTCTTCAATTCCGCCTT
AAAGATAACCAAATGTGCTGATCACAGAAAGGCGGTTTGGGGCTGGTCAG
TCAGGTGGCGTTCGAGCCCTAAAGGGGGGGGGGCGGGCTTGCCCGACGTC
TTCGACGCACCTCAGGCACTGGCAATGGCTTTGCTTTCTCTTGATTCTGT
AGTGGTTGCGGCGGTAAAGGGAAACATTGGGTGATGTGGAAAAAGGTCAA
GTACCACTCGATGTGTTTGTCCACGCATGGGCACGCCACACACATAGTGC
ACTGCTCGAGTCTGGCCTGCAGGCGGACCAAGCGGGCCGGCCCACGGTAA
TAATTATGTGCGGCAGCGTTCGTCATCGTCACTGTGATGTCTTGCTTCGG
AGGACCAAGGCACCATATACAACGCGCACCTTCTCAGCGTCCCAACCCAA
CCATCACGCCTGCATGCACCGTCATAATCACCACGTGTGGGCATGCGGCG
ATTGTGGTCCGCGCCGAGCTGACGGCGGGCGCCCTGTACGCGCGGCAAAT
AAAGCGTGTCCGTCCCATCGCCCACAGCCTTGTCTGTCCGCTTTACATAC
ATCTCATTTTATTCCATCTCACGTCCCGATCCCCCCCCCCCCGCTAAATA
ATCCTACCACACACAGAGTAGGCGCGCCTAGACAGAGCGAAGCCCAGCTC
GGTTCATCTCGCCGGTTTGCTCACAATTCAATAAAAAGGGTGGGTATGAA
GACCAAGGAGGGGAGCAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCG
GTGCCGGAACCGGTAGTCGGGATGGGGGTGGACGCATAACCAAGAAAAAG
AAGCTGAAGGGCAAACTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCC
GAAATTCAAGGCGATTGTTGCGTAAGTGATGGAGGAGAGGGAGGGAGGAA
GGGAGCAAAGGAGGCAGAGCCAGGGGCAGGCGCTTGTAAATGACGCTTGA
GTATAACTTAAATTGTGTGGCTAGAGAGGGGAGGGAGAACACGAAGGCAT
GTACGAGGCTCTTGCTCTTTGTACACCCCTCTCATAACCCAACTACCAAA
CCATCCCCTTCCTCCATTCCCTCCCTCCCTCCCTCTCTCTCTCCACAGCG
CCATCTATGCCCGCAAGCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATA
ATGGCAAACGCCCGACACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAG
CAACAGCAACGACCACAACAACAACAACGACAACGAAATTAACAAGAACA
ACAACAACGGTGGCAACAACGATAACAACGATAGCGTTATCAGAACAATT
GAAGCATCAGCAGCTACAGGGGCATTGCCACGAGTGTTGGAGACGGGATT
GGAAGCACTCAGGGATTTTGATGAGAATGGACGACGGAATCGCAAGTCAG
CTGCAGCAGTGTCGTCTTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGA
GGAGGAGGAGGAAGAGGAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGA
GGAGGATGAGATGGAAGAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTG
GATTAGGAGGGAGGAAGAGGCAGAAGACTATGGCGGATGTCGTGCAGCTG
CATCGGGATTTATCGGACCTTCAACGGACGAGGACGGAATTAAGGTGGTT
GCTGGGACAGGTGGAGAGGTTGGAGTATGAGAGTCTGTAG

Coding sequence (CDS) from alignment at scaffold_7:56475..58364+

>mRNA_2842 ID=mRNA_2842|Name=jgi.p|Nanoce1779_2|669698|organism=Nannochloropsis oceanica|type=CDS|length=3648bp|location=Sequence derived from alignment at scaffold_7:56475..58364+ (Nannochloropsis oceanica)
ATGGCTTTGCTTTCTCTTGATTCTGTAGTGGTTGCGGCGCGTCCCAACCC
AACCATCACGCCTGCATGCACCGTCATAATCACCACGTGTGGGCATGCGG
CGATTGTGGTCCGCGCCGAGCTGACGGCGGGCGCCCTGGTGGGTATGAAG
ACCAAGGAGGGGAGCAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCGG
TGCCGGAACCGGTAGTCGGGATGGGGGTGGACGCATAACCAAGAAAAAGA
AGCTGAAGGGCAAACTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCCG
AAATTCAAGGCGATTGTTGCCGCCATCTATGCCCGCAAGCAAGCAGAGGC
GGAAGAGCTCCGGGTCAAAATAATGGCAAACGCCCGACACGCCGAGGAAG
AAGCCTACCTGCGGAGCAGCAGCAACAGCAACGACCACAACAACAACAAC
GACAACGAAATTAACAAGAACAACAACAACGGTGGCAACAACGATAACAA
CGATAGCGTTATCAGAACAATTGAAGCATCAGCAGCTACAGGGGCATTGC
CACGAGTGTTGGAGACGGGATTGGAAGCACTCAGGGATTTTGATGAGAAT
GGACGACGGAATCGCAAGTCAGCTGCAGCAGTGTCGTCTTCCTTGGTGGC
GGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGTAGGAGGAG
GGCAGGCAGATAGCAGTGATGAGGAGGATGAGATGGAAGAAGGGAAGGGA
GGGAGGGAAGGAATGCCTGCTGGATTAGGAGGGAGGAAGAGGCAGAAGAC
TATGGCGGATGTCGTGCAGCTGCATCGGGATTTATCGGACCTTCAACGGA
CGAGGACGGAATTAAGGTGGTTGCTGGGACAGGTGGAGAGGTTGGAGTAT
GAGAGTCTGTAGATGGCTTTGCTTTCTCTTGATTCTGTAGTGGTTGCGGC
GCGTCCCAACCCAACCATCACGCCTGCATGCACCGTCATAATCACCACGT
GTGGGCATGCGGCGATTGTGGTCCGCGCCGAGCTGACGGCGGGCGCCCTG
GTGGGTATGAAGACCAAGGAGGGGAGCAGCAACAGTAGCAGTGGCATGAT
GGGTGGCAGCGGTGCCGGAACCGGTAGTCGGGATGGGGGTGGACGCATAA
CCAAGAAAAAGAAGCTGAAGGGCAAACTCTTCACCCTGACAACAGGGCCT
TTGCCTCAGCCGAAATTCAAGGCGATTGTTGCCGCCATCTATGCCCGCAA
GCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATAATGGCAAACGCCCGAC
ACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAGCAACAGCAACGACCAC
AACAACAACAACGACAACGAAATTAACAAGAACAACAACAACGGTGGCAA
CAACGATAACAACGATAGCGTTATCAGAACAATTGAAGCATCAGCAGCTA
CAGGGGCATTGCCACGAGTGTTGGAGACGGGATTGGAAGCACTCAGGGAT
TTTGATGAGAATGGACGACGGAATCGCAAGTCAGCTGCAGCAGTGTCGTC
TTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAGGAGGAGGAAGAG
GAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGAGGAGGATGAGATGGAA
GAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTGGATTAGGAGGGAGGAA
GAGGCAGAAGACTATGGCGGATGTCGTGCAGCTGCATCGGGATTTATCGG
ACCTTCAACGGACGAGGACGGAATTAAGGTGGTTGCTGGGACAGGTGGAG
AGGTTGGAGTATGAGAGTCTGTAGATGGCTTTGCTTTCTCTTGATTCTGT
AGTGGTTGCGGCGCGTCCCAACCCAACCATCACGCCTGCATGCACCGTCA
TAATCACCACGTGTGGGCATGCGGCGATTGTGGTCCGCGCCGAGCTGACG
GCGGGCGCCCTGGTGGGTATGAAGACCAAGGAGGGGAGCAGCAACAGTAG
CAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCGGTAGTCGGGATGGGG
GTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGCAAACTCTTCACCCTG
ACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGCGATTGTTGCCGCCAT
CTATGCCCGCAAGCAAGCAGAGGCGGAAGAGCTCCGGGTCAAAATAATGG
CAAACGCCCGACACGCCGAGGAAGAAGCCTACCTGCGGAGCAGCAGCAAC
AGCAACGACCACAACAACAACAACGACAACGAAATTAACAAGAACAACAA
CAACGGTGGCAACAACGATAACAACGATAGCGTTATCAGAACAATTGAAG
CATCAGCAGCTACAGGGGCATTGCCACGAGTGTTGGAGACGGGATTGGAA
GCACTCAGGGATTTTGATGAGAATGGACGACGGAATCGCAAGTCAGCTGC
AGCAGTGTCGTCTTCCTTGGTGGCGGGGGTGCGAGGAGGAGGAGGAGGAG
GAGGAGGAAGAGGAGTAGGAGGAGGGCAGGCAGATAGCAGTGATGAGGAG
GATGAGATGGAAGAAGGGAAGGGAGGGAGGGAAGGAATGCCTGCTGGATT
AGGAGGGAGGAAGAGGCAGAAGACTATGGCGGATGTCGTGCAGCTGCATC
GGGATTTATCGGACCTTCAACGGACGAGGACGGAATTAAGGTGGTTGCTG
GGACAGGTGGAGAGGTTGGAGTATGAGAGTCTGTAGATGGCTTTGCTTTC
TCTTGATTCTGTAGTGGTTGCGGCGCGTCCCAACCCAACCATCACGCCTG
CATGCACCGTCATAATCACCACGTGTGGGCATGCGGCGATTGTGGTCCGC
GCCGAGCTGACGGCGGGCGCCCTGGTGGGTATGAAGACCAAGGAGGGGAG
CAGCAACAGTAGCAGTGGCATGATGGGTGGCAGCGGTGCCGGAACCGGTA
GTCGGGATGGGGGTGGACGCATAACCAAGAAAAAGAAGCTGAAGGGCAAA
CTCTTCACCCTGACAACAGGGCCTTTGCCTCAGCCGAAATTCAAGGCGAT
TGTTGCCGCCATCTATGCCCGCAAGCAAGCAGAGGCGGAAGAGCTCCGGG
TCAAAATAATGGCAAACGCCCGACACGCCGAGGAAGAAGCCTACCTGCGG
AGCAGCAGCAACAGCAACGACCACAACAACAACAACGACAACGAAATTAA
CAAGAACAACAACAACGGTGGCAACAACGATAACAACGATAGCGTTATCA
GAACAATTGAAGCATCAGCAGCTACAGGGGCATTGCCACGAGTGTTGGAG
ACGGGATTGGAAGCACTCAGGGATTTTGATGAGAATGGACGACGGAATCG
CAAGTCAGCTGCAGCAGTGTCGTCTTCCTTGGTGGCGGGGGTGCGAGGAG
GAGGAGGAGGAGGAGGAGGAAGAGGAGTAGGAGGAGGGCAGGCAGATAGC
AGTGATGAGGAGGATGAGATGGAAGAAGGGAAGGGAGGGAGGGAAGGAAT
GCCTGCTGGATTAGGAGGGAGGAAGAGGCAGAAGACTATGGCGGATGTCG
TGCAGCTGCATCGGGATTTATCGGACCTTCAACGGACGAGGACGGAATTA
AGGTGGTTGCTGGGACAGGTGGAGAGGTTGGAGTATGAGAGTCTGTAG

Synonyms

Publications