jgi.p|Nanoce1779_2|517150, mRNA_2840 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|517150
Unique NamemRNA_2840
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length285
Alignment locationscaffold_7:52598..52882 +

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Properties
Property NameValue
TranscriptId517236
TrackFilteredModels2
ProteinId517150
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:52598..52882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517150gene_2840Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|517150mRNA_2840-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2840CDS_2840Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2840 ID=mRNA_2840|Name=jgi.p|Nanoce1779_2|517150|organism=Nannochloropsis oceanica|type=mRNA|length=285bp
GATGATGAGGAGGACGGACAGAACACTTTTGCAGAGCTCCCGCAAGCGAC
CAAGGGTCTACGGGCCTGCCGTAAATGCCGTTTGATCAAGGAATTCTCCC
AGTTTGTGGAGCGCGGGTGTGACAATTGCCGACAGTTCGAGGACCAGGAG
GAGGCGGCTGAGTTCACCTCGCCGCATTACACAGGGATGATGGCACTGGT
GCACCCAGAGGACTCGTGGTCAGCCAAGTGGCAGGGGGCAAGGAGATATA
AGCCAGGGTTGTATGCATTGCAAGTGGAGGGAGAG
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protein sequence of jgi.p|Nanoce1779_2|517150

>mRNA_2840-protein ID=mRNA_2840-protein|Name=jgi.p|Nanoce1779_2|517150|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
DDEEDGQNTFAELPQATKGLRACRKCRLIKEFSQFVERGCDNCRQFEDQE
EAAEFTSPHYTGMMALVHPEDSWSAKWQGARRYKPGLYALQVEGE
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mRNA from alignment at scaffold_7:52598..52882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2840 ID=mRNA_2840|Name=jgi.p|Nanoce1779_2|517150|organism=Nannochloropsis oceanica|type=mRNA|length=285bp|location=Sequence derived from alignment at scaffold_7:52598..52882+ (Nannochloropsis oceanica)
GATGATGAGGAGGACGGACAGAACACTTTTGCAGAGCTCCCGCAAGCGAC
CAAGGGTCTACGGGCCTGCCGTAAATGCCGTTTGATCAAGGAATTCTCCC
AGTTTGTGGAGCGCGGGTGTGACAATTGCCGACAGTTCGAGGACCAGGAG
GAGGCGGCTGAGTTCACCTCGCCGCATTACACAGGGATGATGGCACTGGT
GCACCCAGAGGACTCGTGGTCAGCCAAGTGGCAGGGGGCAAGGAGATATA
AGCCAGGGTTGTATGCATTGCAAGTGGAGGGAGAG
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Coding sequence (CDS) from alignment at scaffold_7:52598..52882+

>mRNA_2840 ID=mRNA_2840|Name=jgi.p|Nanoce1779_2|517150|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_7:52598..52882+ (Nannochloropsis oceanica)
GATGATGAGGAGGACGGACAGAACACTTTTGCAGAGCTCCCGCAAGCGAC
CAAGGGTCTACGGGCCTGCCGTAAATGCCGTTTGATCAAGGAATTCTCCC
AGTTTGTGGAGCGCGGGTGTGACAATTGCCGACAGTTCGAGGACCAGGAG
GAGGCGGCTGAGTTCACCTCGCCGCATTACACAGGGATGATGGCACTGGT
GCACCCAGAGGACTCGTGGTCAGCCAAGTGGCAGGGGGCAAGGAGATATA
AGCCAGGGTTGTATGCATTGCAAGTGGAGGGAGAG
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Synonyms
Publications