jgi.p|Nanoce1779_2|583510, mRNA_2838 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583510
Unique NamemRNA_2838
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1422
Alignment locationscaffold_7:43755..45192 +

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Properties
Property NameValue
TranscriptId583596
TrackFilteredModels2
ProteinId583510
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:43755..45192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583510gene_2838Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583510mRNA_2838-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2838CDS_2838Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2838 ID=mRNA_2838|Name=jgi.p|Nanoce1779_2|583510|organism=Nannochloropsis oceanica|type=mRNA|length=1422bp
AGCAGGAGGGACGAGCAAGTACTGTCGGACCGCAGCTACGCCTAACACCC
TGCTGCCTCCTCCTACCTCCTGCTGTGGTCTCAACCTATACCTGGCTGCT
GTAGCATCAGCGTCGATCTCTACTTTTCCAACCGAACGCATGTCGGCCTA
TTCCCTTCCACGGCGCATGTGGCGGCTGGAGCCATGGGGATATCCGGCCC
GTTCCCAATTTGCCATTACACATCTCAAGTTTCCAGCTGGCAGCAGCAAT
AAGGGGTGCTACCAGTATCGCCGACACGTGGCTGTGGCGTACCGCTTGTT
TTTGGCTCTGTACTGGACATTTTGGATTTTGTATTCCTCCCTAGGCGGTG
ACGGTCCCCCAACGTGGTGGTGGTGCGTGTACGTCACAGACTGGAGCGCT
GCGTTAATGGGCGGGTATTTTTGGGCTGCCTTCCTTGCGATGATCTTCTC
GCGGACTCGATTCCTGGACACGGCGGCTTGGTTTTTGCACGACATTGCAT
GTCCGCTCTCCTTGATGGTGGCGATCCTTTATTGGGGCATGGGGTCGGAC
GCGCCCGTTAATGGGGTCAGCGTTCATTTCCATGGGGTTAATGCCCTGCT
TATGGTTATAGATCTAGCCTTATCTCGGTACCCTTACCACCTGAAGCATT
TTTTACCTGCGACGGGCTTTATTGCTGCGTATTTGCTTTTTAATGGGTTG
TTCTGGCACCATACCGGAACGGTGATATATGCCCCGCTCAACTACTCGAT
GATGCCTTTGGCCTTGATATCTATAATCGGAACTTTTCTGGTGCTCTTGC
CTTCCATGCATCTTTTGTGTTGGAGATGGGAATTGGCTTGTTTTGCTTAC
AGTGAGAAGAGGCGGAATTTATGGGCGAGGAAGACGAGAGGGGAGGATCC
GGTGCCTTCCCTGTACAACGGCCACAGGGGGGGGGAGCAACAGAAAACGA
ATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTCGGAGGGGGGGACGGAT
GACCTACAGAGGAGTACAAGTCATGACCTGGAGGAAGGGGAGAAGGAGGG
AGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGGGTGCTAGCCACGCGCC
ACCTCCCCTCTTTGGAAGATTATGATGAGAAGGGGAAGGAAGGAATAAGC
GAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGGTGATCGGAGATAAGGA
GGATGCCCGTTATGTAACGGCTGCGGCGGGTGGGTCAACGGCCACGGCTC
CCGTTGCTGTCGCTGTTGATAGATTGAAAGGATGAGTTTAAGGGTTTGTT
AATAAGAGGAAAGGAGGGCATGAGAGGATATACAGGGAGGGAGGGAGAAT
GGGAGGGAGGGAGGGAGGATAGACTGCGGTACTAGACGGCGTTAAATGGC
CTTACTGTTATTGGTGCTTATG
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protein sequence of jgi.p|Nanoce1779_2|583510

>mRNA_2838-protein ID=mRNA_2838-protein|Name=jgi.p|Nanoce1779_2|583510|organism=Nannochloropsis oceanica|type=polypeptide|length=382bp
MSAYSLPRRMWRLEPWGYPARSQFAITHLKFPAGSSNKGCYQYRRHVAVA
YRLFLALYWTFWILYSSLGGDGPPTWWWCVYVTDWSAALMGGYFWAAFLA
MIFSRTRFLDTAAWFLHDIACPLSLMVAILYWGMGSDAPVNGVSVHFHGV
NALLMVIDLALSRYPYHLKHFLPATGFIAAYLLFNGLFWHHTGTVIYAPL
NYSMMPLALISIIGTFLVLLPSMHLLCWRWELACFAYSEKRRNLWARKTR
GEDPVPSLYNGHRGGEQQKTNAEEKEERRGKSEGGTDDLQRSTSHDLEEG
EKEGVVVPPSTLSDRVLATRHLPSLEDYDEKGKEGISEEACGGPRGGVVI
GDKEDARYVTAAAGGSTATAPVAVAVDRLKG*
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mRNA from alignment at scaffold_7:43755..45192+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2838 ID=mRNA_2838|Name=jgi.p|Nanoce1779_2|583510|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp|location=Sequence derived from alignment at scaffold_7:43755..45192+ (Nannochloropsis oceanica)
AGCAGGAGGGACGAGCAAGTACTGTCGGACCGCAGCTACGCCTAACACCC
TGCTGCCTCCTCCTACCTCCTGCTGTGGTCTCAACCTATACCTGGCTGCT
GTAGCATCAGCGTCGATCTCTACTTTTCCAACCGAACGCATGTCGGCCTA
TTCCCTTCCACGGCGCATGTGGCGGCTGGAGCCATGGGGATATCCGGCCC
GTTCCCAATTTGCCATTACACATCTCAAGTTTCCAGCTGGCAGCAGCAAT
AAGGGGTGCTACCAGTATCGCCGACACGTGGCTGTGGCGTACCGCTTGTT
TTTGGCTCTGTACTGGACATTTTGGATTTTGTATTCCTCCCTAGGCGGTG
ACGGTCCCCCAACGTGGTGGTGGTGCGTGTACGTCACAGACTGGAGCGCT
GCGTTAATGGGCGGGTATTTTTGGGCTGCCTTCCTTGCGATGATCTTCTC
GCGGACTCGATTCCTGGACACGGCGGCTTGGTTTTTGCACGACATTGCAT
GTCCGCTCTCCTTGATGGTGGCGATCCTTTATTGGGGCATGGGGTCGGAC
GCGCCCGTTAATGGGGTCAGCGTTCATTTCCATGGGGTTAATGCCCTGCT
TATGGTTATAGATCTAGCCTTATCTCGGTACCCTTACCACCTGAAGCATT
TTTTACCTGCGACGGGCTTTATTGCTGCGTATTTGCTTTTTAATGGGTTG
TTCTGGCACCATACCGGAACGGTGATATATGCCCCGCTCAACTACTCGAT
GATGCCTTTGGCCTTGATATCTATAATCGGAACTTTTCTGGTGCTCTTGC
CTTCCATGCATCTTTTGTGTTGGAGATGGGAATTGGCTTGTTTTGCTTAC
AGTGAGAAGAGGCGGAATTTATGGGCGAGGAAGACGAGAGGGGAGGATCC
GGTGCCTTCCCTGTACAACGGCCACAGTATCCAACAAAAGAGGGGGGGGG
GAGCAACAGAAAACGAATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTC
GGAGGGGGGGACGGATGACCTACAGAGGAGTACAAGTCATGACCTGGAGG
AAGGGGAGAAGGAGGGAGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGG
GTGCTAGCCACGCGCCACCTCCCCTCTTTGGAAGATTATGATGAGAAGGG
GAAGGAAGGAATAAGCGAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGG
TGATCGGAGATAAGGAGGATGCCCGTTATGTAACGGCTGCGGCGGGTGGG
TCAACGGCCACGGCTCCCGTTGCTGTCGCTGTTGATAGATTGAAAGGATG
AGTTTAAGGGTTTGTTAATAAGAGGAAAGGAGGGCATGAGAGGATATACA
GGGAGGGAGGGAGAATGGGAGGGAGGGAGGGAGGATAGACTGCGGTACTA
GACGGCGTTAAATGGCCTTACTGTTATTGGTGCTTATG
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Coding sequence (CDS) from alignment at scaffold_7:43755..45192+

>mRNA_2838 ID=mRNA_2838|Name=jgi.p|Nanoce1779_2|583510|organism=Nannochloropsis oceanica|type=CDS|length=2292bp|location=Sequence derived from alignment at scaffold_7:43755..45192+ (Nannochloropsis oceanica)
ATGTCGGCCTATTCCCTTCCACGGCGCATGTGGCGGCTGGAGCCATGGGG
ATATCCGGCCCGTTCCCAATTTGCCATTACACATCTCAAGTTTCCAGCTG
GCAGCAGCAATAAGGGGTGCTACCAGTATCGCCGACACGTGGCTGTGGCG
TACCGCTTGTTTTTGGCTCTGTACTGGACATTTTGGATTTTGTATTCCTC
CCTAGGCGGTGACGGTCCCCCAACGTGGTGGTGGTGCGTGTACGTCACAG
ACTGGAGCGCTGCGTTAATGGGCGGGTATTTTTGGGCTGCCTTCCTTGCG
ATGATCTTCTCGCGGACTCGATTCCTGGACACGGCGGCTTGGTTTTTGCA
CGACATTGCATGTCCGCTCTCCTTGATGGTGGCGATCCTTTATTGGGGCA
TGGGGTCGGACGCGCCCGTTAATGGGGTCAGCGTTCATTTCCATGGGGTT
AATGCCCTGCTTATGGTTATAGATCTAGCCTTATCTCGGTACCCTTACCA
CCTGAAGCATTTTTTACCTGCGACGGGCTTTATTGCTGCGTATTTGCTTT
TTAATGGGTTGTTCTGGCACCATACCGGAACGGTGATATATGCCCCGCTC
AACTACTCGATGATGCCTTTGGCCTTGATATCTATAATCGGAACTTTTCT
GGTGCTCTTGCCTTCCATGCATCTTTTGTGTTGGAGATGGGAATTGGCTT
GTTTTGCTTACAGTGAGAAGAGGCGGAATTTATGGGCGAGGAAGACGAGA
GGGGAGGATCCGGTGCCTTCCCTGTACAACGGCCACAGGGGGGGGGAGCA
ACAGAAAACGAATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTCGGAGG
GGGGGACGGATGACCTACAGAGGAGTACAAGTCATGACCTGGAGGAAGGG
GAGAAGGAGGGAGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGGGTGCT
AGCCACGCGCCACCTCCCCTCTTTGGAAGATTATGATGAGAAGGGGAAGG
AAGGAATAAGCGAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGGTGATC
GGAGATAAGGAGGATGCCCGTTATGTAACGGCTGCGGCGGGTGGGTCAAC
GGCCACGGCTCCCGTTGCTGTCGCTGTTGATAGATTGAAAGGATGAATGT
CGGCCTATTCCCTTCCACGGCGCATGTGGCGGCTGGAGCCATGGGGATAT
CCGGCCCGTTCCCAATTTGCCATTACACATCTCAAGTTTCCAGCTGGCAG
CAGCAATAAGGGGTGCTACCAGTATCGCCGACACGTGGCTGTGGCGTACC
GCTTGTTTTTGGCTCTGTACTGGACATTTTGGATTTTGTATTCCTCCCTA
GGCGGTGACGGTCCCCCAACGTGGTGGTGGTGCGTGTACGTCACAGACTG
GAGCGCTGCGTTAATGGGCGGGTATTTTTGGGCTGCCTTCCTTGCGATGA
TCTTCTCGCGGACTCGATTCCTGGACACGGCGGCTTGGTTTTTGCACGAC
ATTGCATGTCCGCTCTCCTTGATGGTGGCGATCCTTTATTGGGGCATGGG
GTCGGACGCGCCCGTTAATGGGGTCAGCGTTCATTTCCATGGGGTTAATG
CCCTGCTTATGGTTATAGATCTAGCCTTATCTCGGTACCCTTACCACCTG
AAGCATTTTTTACCTGCGACGGGCTTTATTGCTGCGTATTTGCTTTTTAA
TGGGTTGTTCTGGCACCATACCGGAACGGTGATATATGCCCCGCTCAACT
ACTCGATGATGCCTTTGGCCTTGATATCTATAATCGGAACTTTTCTGGTG
CTCTTGCCTTCCATGCATCTTTTGTGTTGGAGATGGGAATTGGCTTGTTT
TGCTTACAGTGAGAAGAGGCGGAATTTATGGGCGAGGAAGACGAGAGGGG
AGGATCCGGTGCCTTCCCTGTACAACGGCCACAGGGGGGGGGAGCAACAG
AAAACGAATGCAGAGGAGAAAGAGGAGAGGAGGGGAAAGTCGGAGGGGGG
GACGGATGACCTACAGAGGAGTACAAGTCATGACCTGGAGGAAGGGGAGA
AGGAGGGAGTTGTTGTCCCCCCGTCTACTCTCTCGGATAGGGTGCTAGCC
ACGCGCCACCTCCCCTCTTTGGAAGATTATGATGAGAAGGGGAAGGAAGG
AATAAGCGAAGAGGCGTGTGGCGGACCTAGGGGTGGTGTGGTGATCGGAG
ATAAGGAGGATGCCCGTTATGTAACGGCTGCGGCGGGTGGGTCAACGGCC
ACGGCTCCCGTTGCTGTCGCTGTTGATAGATTGAAAGGATGA
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Synonyms
Publications