jgi.p|Nanoce1779_2|583506, mRNA_2836 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583506
Unique NamemRNA_2836
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1079
Alignment locationscaffold_7:40323..41628 -

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Properties
Property NameValue
TranscriptId583592
TrackFilteredModels2
ProteinId583506
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:40323..41628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583506gene_2836Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583506mRNA_2836-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2836CDS_2836Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2836 ID=mRNA_2836|Name=jgi.p|Nanoce1779_2|583506|organism=Nannochloropsis oceanica|type=mRNA|length=1079bp
AAATAAAAGACAGCAAATCAGAACACTAAGGAATAATCATGATCAGCACG
TGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGCCGGCATTGCCTC
AGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACTACAGCCGTGCCC
TACTCACACCACCCCGGGATGTGTACTCCATGACCATCACCAATAAGTTG
AGTGTCGCCGTCAACTCGACCTTTACTTTCACCAAAGGAACGAACATTCA
TGAGATGATGATAGAGAAGAAGCTAATCGCCCCCGGCGCATCCTTCACCT
CTGGGCCCTACGAATACAAGGAGGGCACCGCCACCTTCCGGTACGTCCTC
CAAATGGTCAAAGTCAAAAACTTGCCGGCTGGCGCAGGCTATTCGGAGCA
GCAGGCTCTCTCGTTGGAGGCTCCGTTTGAAGGCGTGACGGGTGTGACCC
CGCTTATGGAATTACACGTGTTGCCTAAGGAGAGTGATGGGAGGGGGGAG
AAATTGGGAAGCTTGCTGTTGAAGGCGCCGGTGGTGCCTGCTGTTTAGAA
AAAGAACTTGCGGTTGCAATGACCGAAAGAGGGAGAGAGAAAGAATGGCA
TTCCTAAGCAAAATATGTGAGGTGTAGGAGGTAGAGTGCTGTAGTGAGAG
AGAAAGAGAGAGAAACCTTGTGCAAGATGAAAAAAATTAAAGTCGGCCAA
TCCATCAGTGAAAAGGGGAAAGGGGATTGGAAGTAGGAAAACTATCGGTC
ACAGCTTCGAAATTGATGGCACTCTCTGAGACACACAGATATATGCGCAC
GCCCATACACCCAATCACACAACGGGGGCCAACGTCGTCGCCCACTATCG
CCGTGTAAATTAAAAGAATTTTGTAATTTGCGCCAGGAACGAGAGGAGAC
GGAGGACGAGGAGGCGAACGGAATTGAGGGAGACGAAAGAAGAGAGAGAG
AACCCCAGCTTTTTAATTTGACTTAATTAAAAAACAGATGTCCTTATGAA
AGTACGAGGACAGACTTATGAATCGAGTAAATCATGATGCAAAGGAAGTG
GCAAAAATGTAATTCTGTCCTATTTGAAA
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protein sequence of jgi.p|Nanoce1779_2|583506

>mRNA_2836-protein ID=mRNA_2836-protein|Name=jgi.p|Nanoce1779_2|583506|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MISTCLQFLLVSMVMAAGIASESPEAGSKTHANYSRALLTPPRDVYSMTI
TNKLSVAVNSTFTFTKGTNIHEMMIEKKLIAPGASFTSGPYEYKEGTATF
RYVLQMVKVKNLPAGAGYSEQQALSLEAPFEGVTGVTPLMELHVLPKESD
GRGEKLGSLLLKAPVVPAV*
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mRNA from alignment at scaffold_7:40323..41628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2836 ID=mRNA_2836|Name=jgi.p|Nanoce1779_2|583506|organism=Nannochloropsis oceanica|type=mRNA|length=1306bp|location=Sequence derived from alignment at scaffold_7:40323..41628- (Nannochloropsis oceanica)
AAATAAAAGACAGCAAATCAGAACACTAAGGAATAATCATGATCAGCACG
TGCCTTCAATTTCTCCTCGTGTCCATGGTGATGGCTGCCGGCATTGCCTC
AGAGAGCCCTGAAGCGGGCAGCAAAACCCACGCCAACCTCCGGTACGTAA
GCGCAGAGGCCCTCGCTCCCAGCCGCGAGACATGCTTGCCCTATTATCTC
ACACACACCACTACGGTCTTGTCTCAAGCGCTTTGTGTGTGCATCCTCTC
GCTTCCCGCTCTCCCCCTTTATGGTCTCGACCTACCACCCCCTTCGTAAT
CCCCGGGGGCACCCTCCGCCGAGCCAACTAACGCATTCAGGAATCCACCT
GATCTTACGCACACTACAGCCGTGCCCTACTCACACCACCCCGGGATGTG
TACTCCATGACCATCACCAATAAGTTGAGTGTCGCCGTCAACTCGACCTT
TACTTTCACCAAAGGAACGAACATTCATGAGATGATGATAGAGAAGAAGC
TAATCGCCCCCGGCGCATCCTTCACCTCTGGGCCCTACGAATACAAGGAG
GGCACCGCCACCTTCCGGTACGTCCTCCAAATGGTCAAAGTCAAAAACTT
GCCGGCTGGCGCAGGCTATTCGGAGCAGCAGGCTCTCTCGTTGGAGGCTC
CGTTTGAAGGCGTGACGGGTGTGACCCCGCTTATGGAATTACACGTGTTG
CCTAAGGAGAGTGATGGGAGGGGGGAGAAATTGGGAAGCTTGCTGTTGAA
GGCGCCGGTGGTGCCTGCTGTTTAGAAAAAGAACTTGCGGTTGCAATGAC
CGAAAGAGGGAGAGAGAAAGAATGGCATTCCTAAGCAAAATATGTGAGGT
GTAGGAGGTAGAGTGCTGTAGTGAGAGAGAAAGAGAGAGAAACCTTGTGC
AAGATGAAAAAAATTAAAGTCGGCCAATCCATCAGTGAAAAGGGGAAAGG
GGATTGGAAGTAGGAAAACTATCGGTCACAGCTTCGAAATTGATGGCACT
CTCTGAGACACACAGATATATGCGCACGCCCATACACCCAATCACACAAC
GGGGGCCAACGTCGTCGCCCACTATCGCCGTGTAAATTAAAAGAATTTTG
TAATTTGCGCCAGGAACGAGAGGAGACGGAGGACGAGGAGGCGAACGGAA
TTGAGGGAGACGAAAGAAGAGAGAGAGAACCCCAGCTTTTTAATTTGACT
TAATTAAAAAACAGATGTCCTTATGAAAGTACGAGGACAGACTTATGAAT
CGAGTAAATCATGATGCAAAGGAAGTGGCAAAAATGTAATTCTGTCCTAT
TTGAAA
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Coding sequence (CDS) from alignment at scaffold_7:40323..41628-

>mRNA_2836 ID=mRNA_2836|Name=jgi.p|Nanoce1779_2|583506|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at scaffold_7:40323..41628- (Nannochloropsis oceanica)
TACAGCCGTGCCCTACTCACACCACCCCGGGATGTGTACTCCATGACCAT
CACCAATAAGTTGAGTGTCGCCGTCAACTCGACCTTTACTTTCACCAAAG
GAACGAACATTCATGAGATGATGATAGAGAAGAAGCTAATCGCCCCCGGC
GCATCCTTCACCTCTGGGCCCTACGAATACAAGGAGGGCACCGCCACCTT
CCGGTACGTCCTCCAAATGGTCAAAGTCAAAAACTTGCCGGCTGGCGCAG
GCTATTCGGAGCAGCAGGCTCTCTCGTTGGAGGCTCCGTTTGAAGGCGTG
ACGGGTGTGACCCCGCTTATGGAATTACACGTGTTGCCTAAGGAGAGTGA
TGGGAGGGGGGAGAAATTGGGAAGCTTGCTGTTGAAGGCGCCGGTGGTGC
CTGCTGTTTAGATGATCAGCACGTGCCTTCAATTTCTCCTCGTGTCCATG
GTGATGGCTGCCGGCATTGCCTCAGAGAGCCCTGAAGCGGGCAGCAAAAC
CCACGCCAACTACAGCCGTGCCCTACTCACACCACCCCGGGATGTGTACT
CCATGACCATCACCAATAAGTTGAGTGTCGCCGTCAACTCGACCTTTACT
TTCACCAAAGGAACGAACATTCATGAGATGATGATAGAGAAGAAGCTAAT
CGCCCCCGGCGCATCCTTCACCTCTGGGCCCTACGAATACAAGGAGGGCA
CCGCCACCTTCCGGTACGTCCTCCAAATGGTCAAAGTCAAAAACTTGCCG
GCTGGCGCAGGCTATTCGGAGCAGCAGGCTCTCTCGTTGGAGGCTCCGTT
TGAAGGCGTGACGGGTGTGACCCCGCTTATGGAATTACACGTGTTGCCTA
AGGAGAGTGATGGGAGGGGGGAGAAATTGGGAAGCTTGCTGTTGAAGGCG
CCGGTGGTGCCTGCTGTTTAGATGATCAGCACGTGCCTTCAATTTCTCCT
CGTGTCCATGGTGATGGCTGCCGGCATTGCCTCAGAGAGCCCTGAAGCGG
GCAGCAAAACCCACGCCAAC
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Synonyms
Publications