jgi.p|Nanoce1779_2|583495, mRNA_2832 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583495
Unique NamemRNA_2832
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length668
Alignment locationscaffold_7:31743..32410 -

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Properties
Property NameValue
TranscriptId583581
TrackFilteredModels2
ProteinId583495
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:31743..32410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583495gene_2832Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583495mRNA_2832-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2832CDS_2832Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2832 ID=mRNA_2832|Name=jgi.p|Nanoce1779_2|583495|organism=Nannochloropsis oceanica|type=mRNA|length=668bp
CCCGCCTCCATTCCCGTCCTCTCTCTCCTCCGGCTTCCGTCCTCGCGCCC
TTTCTCCCTCCCTCCCTCCCTCCTTCTGCCAATCCTGCTTGGACAACAAC
GAAAAGATCGTCAACTTTCTCATGAATCATCAGAGAGCTAACCGCAAGAT
CAAGAACATGAGAATACAGCAGCAGCGGCACCAGCAGCAGTGGGAAACGA
GCAAGAGAAGGCCCAGCTACCTCGGAGATCTTCATTCGCCTGCCCTTACC
CTTCCCTTTCCTCTTTCTCCCTTGTATCTCGCCTCTGTCACCGACAACTT
AGACAACGACAACTTAGACAACTTCAACAACAACAACAACAACGACAGCG
ATGGCAATGGTGAGGACGAGGACGAGGATATAAACGAAGGCACGGGGGAG
GAGAAACCAGACTTGAGCGCCTCCTTCCTCATCAACTTCCTCAGTGGTTA
CAAGCAATTCATCTCCCCCCTCCTCCCCCGGGCCTGTCGGTTCTTTCCCA
CATGCAGCGAATACGCCATCGAATCAATTCAGACCTTTGGAGCGGCCAAG
GGGATTATCCTGACCGTATGGCGGCTCCTGCGATGCAATCCGCTCGGAGG
GAGGGGATGGGACCCCCCACAGTGGCCGCCGCCCGGGTGGTTCGCGGGGG
GAACGGGGAGATAGGGAG
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protein sequence of jgi.p|Nanoce1779_2|583495

>mRNA_2832-protein ID=mRNA_2832-protein|Name=jgi.p|Nanoce1779_2|583495|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MNHQRANRKIKNMRIQQQRHQQQWETSKRRPSYLGDLHSPALTLPFPLSP
LYLASVTDNLDNDNLDNFNNNNNNDSDGNGEDEDEDINEGTGEEKPDLSA
SFLINFLSGYKQFISPLLPRACRFFPTCSEYAIESIQTFGAAKGIILTVW
RLLRCNPLGGRGWDPPQWPPPGWFAGGTGR*
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mRNA from alignment at scaffold_7:31743..32410-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2832 ID=mRNA_2832|Name=jgi.p|Nanoce1779_2|583495|organism=Nannochloropsis oceanica|type=mRNA|length=668bp|location=Sequence derived from alignment at scaffold_7:31743..32410- (Nannochloropsis oceanica)
CCCGCCTCCATTCCCGTCCTCTCTCTCCTCCGGCTTCCGTCCTCGCGCCC
TTTCTCCCTCCCTCCCTCCCTCCTTCTGCCAATCCTGCTTGGACAACAAC
GAAAAGATCGTCAACTTTCTCATGAATCATCAGAGAGCTAACCGCAAGAT
CAAGAACATGAGAATACAGCAGCAGCGGCACCAGCAGCAGTGGGAAACGA
GCAAGAGAAGGCCCAGCTACCTCGGAGATCTTCATTCGCCTGCCCTTACC
CTTCCCTTTCCTCTTTCTCCCTTGTATCTCGCCTCTGTCACCGACAACTT
AGACAACGACAACTTAGACAACTTCAACAACAACAACAACAACGACAGCG
ATGGCAATGGTGAGGACGAGGACGAGGATATAAACGAAGGCACGGGGGAG
GAGAAACCAGACTTGAGCGCCTCCTTCCTCATCAACTTCCTCAGTGGTTA
CAAGCAATTCATCTCCCCCCTCCTCCCCCGGGCCTGTCGGTTCTTTCCCA
CATGCAGCGAATACGCCATCGAATCAATTCAGACCTTTGGAGCGGCCAAG
GGGATTATCCTGACCGTATGGCGGCTCCTGCGATGCAATCCGCTCGGAGG
GAGGGGATGGGACCCCCCACAGTGGCCGCCGCCCGGGTGGTTCGCGGGGG
GAACGGGGAGATAGGGAG
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Coding sequence (CDS) from alignment at scaffold_7:31743..32410-

>mRNA_2832 ID=mRNA_2832|Name=jgi.p|Nanoce1779_2|583495|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_7:31743..32410- (Nannochloropsis oceanica)
ATGAATCATCAGAGAGCTAACCGCAAGATCAAGAACATGAGAATACAGCA
GCAGCGGCACCAGCAGCAGTGGGAAACGAGCAAGAGAAGGCCCAGCTACC
TCGGAGATCTTCATTCGCCTGCCCTTACCCTTCCCTTTCCTCTTTCTCCC
TTGTATCTCGCCTCTGTCACCGACAACTTAGACAACGACAACTTAGACAA
CTTCAACAACAACAACAACAACGACAGCGATGGCAATGGTGAGGACGAGG
ACGAGGATATAAACGAAGGCACGGGGGAGGAGAAACCAGACTTGAGCGCC
TCCTTCCTCATCAACTTCCTCAGTGGTTACAAGCAATTCATCTCCCCCCT
CCTCCCCCGGGCCTGTCGGTTCTTTCCCACATGCAGCGAATACGCCATCG
AATCAATTCAGACCTTTGGAGCGGCCAAGGGGATTATCCTGACCGTATGG
CGGCTCCTGCGATGCAATCCGCTCGGAGGGAGGGGATGGGACCCCCCACA
GTGGCCGCCGCCCGGGTGGTTCGCGGGGGGAACGGGGAGATAG
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Synonyms
Publications