jgi.p|Nanoce1779_2|388011, mRNA_2830 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|388011
Unique NamemRNA_2830
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length939
Alignment locationscaffold_7:25514..26789 -

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Properties
Property NameValue
TranscriptId388097
TrackFilteredModels2
ProteinId388011
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:25514..26789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|388011gene_2830Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|388011mRNA_2830-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2830CDS_2830Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2830 ID=mRNA_2830|Name=jgi.p|Nanoce1779_2|388011|organism=Nannochloropsis oceanica|type=mRNA|length=939bp
CACTTCCGAGTGAACCAACCCCTACATCTTTTTCATTTTCCCACGAAACA
CACTGCCACAGCGCGTGCAAAGATGCCGTCAGCTCCACTTATTCCTTCCG
CTATGATAGTATGCCGATGGTTGCGACGCCTTACTCCCCGACGCCCCGAG
TGTTTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCCGGGCCCAACAT
GAGCAGCAACATCAGCAACAGCAGCAGCCGCAGCAGCAGCAGCAGCAACA
ACAACAACAAGGAGGAGAAAGAGAAGGAGAACGAGCGACGGCAGCAGCAG
CAGCAGCAGCAGCGACCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAG
GAGAGCTTAGAGCACCAAAAGCAGGAGCCAGAGTCACGAGCCGCTCCTAC
TGGCGCCGGTGATTCTCATGTAACGGCGCATGTAACCCCTTACCCGACGA
CGAGGAGGGGCAGATTGATCGACATCAGTCATCGACCCTACCACCACCAT
GACGGCCACTGCAGCGTTGCCGACAGCAGTAGCAGCACGAACAGCCCTGA
GAAACAAGAATCCTCCTCCTCCTCCTCCTCCCCCCCTTCCTCTTCCTCTT
TCTCCCGCACCACGATCGTGACACGTATTGCTGCCGTGCACTGGCCCTCT
TTCGGAAGAAGCAACGGCCTGAGCAGCAGCAACAGCAGCAGCAGCAACGA
CAGTCCTTCTTCGCTGCCTTCCCTTCCAGCCATACGCCCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGGCCCCCCCCTCC
ATCTCCTCGTTCTTGATACCGACAACCACTCTCTCTCTGAAGCCCTCTGG
CGGGAAATAGCCACCTTCCTTCCCCTCGTCGACCTCCTCCCCTTCTCCCG
CCTATCCCGTCGCGCGGCCTCCCTCCGTCCCTCCCTCCT
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protein sequence of jgi.p|Nanoce1779_2|388011

>mRNA_2830-protein ID=mRNA_2830-protein|Name=jgi.p|Nanoce1779_2|388011|organism=Nannochloropsis oceanica|type=polypeptide|length=250bp
MPMVATPYSPTPRVFSSSSSSSSSRCRAQHEQQHQQQQQPQQQQQQQQQQ
GGEREGERATAAAAAAAATAAAKVPQEEEQESLEHQKQEPESRAAPTGAG
DSHVTAHVTPYPTTRRGRLIDISHRPYHHHDGHCSVADSSSSTNSPEKQE
SSSSSSSPPSSSSFSRTTIVTRIAAVHWPSFGRSNGLSSSNSSSSNDSPS
SLPSLPAIRPSSSSSSSSSSSSSSSRAPPSISSFLIPTTTLSLKPSGGK*
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mRNA from alignment at scaffold_7:25514..26789-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2830 ID=mRNA_2830|Name=jgi.p|Nanoce1779_2|388011|organism=Nannochloropsis oceanica|type=mRNA|length=1276bp|location=Sequence derived from alignment at scaffold_7:25514..26789- (Nannochloropsis oceanica)
CACTTCCGAGTGAACCAACCCCTACATCTTTTTCATTTTCCCACGAAACA
CACTGCCACAGCGCGTGCAAAGATGCCGTCAGCTCCACTTATTCCTTCCG
CTATGATAGTATGCCGATGGTTGCGACGCCTTACTCCCCGACGCCCCGAG
TGTTTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCCGGGCCCAACAT
GAGCAGCAACATCAGCAACAGCAGCAGCCGCAGCAGCAGCAGCAGCAACA
ACAACAACAAGGAGGAGAAAGAGAAGGAGAACGAGGTATGTGAGAATGGC
ATGTGATTTTTGTCATGGACAAGTGCTCGCCGAGTTTGGTGCCCGTACAA
AGGAACTGACTTGTTCACTCCATACAGCGACGGCAGCAGCAGCAGCAGCA
GCAGCGACCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAGGAGAGCTT
AGAGCACCAAAAGCAGGAGCCAGAGTCACGAGGTATGTTGGTTTGAGTGT
GTATGCCCGATGCCATGGGTGTGTGCAGGTCATTGTAGGGGTGTGAACGG
CTCGAATTCATCTCTTAATGCATATTTGTTCAACCTGCGCGAAGATAAGG
GGAAAGCGAGGACAAGACACGCCGTATTTGTCACATTGCGTGCATACACA
ATTCCAACACTGAAAGTGCATATTTCTTTTCTCCTCTATGCGCCTTGGTG
TGCCCATGGACCACGCCCCACCCACAGCCGCTCCTACTGGCGCCGGTGAT
TCTCATGTAACGGCGCATGTAACCCCTTACCCGACGACGAGGAGGGGCAG
ATTGATCGACATCAGTCATCGACCCTACCACCACCATGACGGCCACTGCA
GCGTTGCCGACAGCAGTAGCAGCACGAACAGCCCTGAGAAACAAGAATCC
TCCTCCTCCTCCTCCTCCCCCCCTTCCTCTTCCTCTTTCTCCCGCACCAC
GATCGTGACACGTATTGCTGCCGTGCACTGGCCCTCTTTCGGAAGAAGCA
ACGGCCTGAGCAGCAGCAACAGCAGCAGCAGCAACGACAGTCCTTCTTCG
CTGCCTTCCCTTCCAGCCATACGCCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCCGGGCCCCCCCCTCCATCTCCTCGTTCT
TGATACCGACAACCACTCTCTCTCTGAAGCCCTCTGGCGGGAAATAGCCA
CCTTCCTTCCCCTCGTCGACCTCCTCCCCTTCTCCCGCCTATCCCGTCGC
GCGGCCTCCCTCCGTCCCTCCCTCCT
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Coding sequence (CDS) from alignment at scaffold_7:25514..26789-

>mRNA_2830 ID=mRNA_2830|Name=jgi.p|Nanoce1779_2|388011|organism=Nannochloropsis oceanica|type=CDS|length=2250bp|location=Sequence derived from alignment at scaffold_7:25514..26789- (Nannochloropsis oceanica)
CCGCTCCTACTGGCGCCGGTGATTCTCATGTAACGGCGCATGTAACCCCT
TACCCGACGACGAGGAGGGGCAGATTGATCGACATCAGTCATCGACCCTA
CCACCACCATGACGGCCACTGCAGCGTTGCCGACAGCAGTAGCAGCACGA
ACAGCCCTGAGAAACAAGAATCCTCCTCCTCCTCCTCCTCCCCCCCTTCC
TCTTCCTCTTTCTCCCGCACCACGATCGTGACACGTATTGCTGCCGTGCA
CTGGCCCTCTTTCGGAAGAAGCAACGGCCTGAGCAGCAGCAACAGCAGCA
GCAGCAACGACAGTCCTTCTTCGCTGCCTTCCCTTCCAGCCATACGCCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGGC
CCCCCCCTCCATCTCCTCGTTCTTGATACCGACAACCACTCTCTCTCTGA
AGCCCTCTGGCGGGAAATAGCGACGGCAGCAGCAGCAGCAGCAGCAGCGA
CCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAGGAGAGCTTAGAGCAC
CAAAAGCAGGAGCCAGAGTCACGAGATGCCGATGGTTGCGACGCCTTACT
CCCCGACGCCCCGAGTGTTTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGG
TGCCGGGCCCAACATGAGCAGCAACATCAGCAACAGCAGCAGCCGCAGCA
GCAGCAGCAGCAACAACAACAACAAGGAGGAGAAAGAGAAGGAGAACGAG
CCGCTCCTACTGGCGCCGGTGATTCTCATGTAACGGCGCATGTAACCCCT
TACCCGACGACGAGGAGGGGCAGATTGATCGACATCAGTCATCGACCCTA
CCACCACCATGACGGCCACTGCAGCGTTGCCGACAGCAGTAGCAGCACGA
ACAGCCCTGAGAAACAAGAATCCTCCTCCTCCTCCTCCTCCCCCCCTTCC
TCTTCCTCTTTCTCCCGCACCACGATCGTGACACGTATTGCTGCCGTGCA
CTGGCCCTCTTTCGGAAGAAGCAACGGCCTGAGCAGCAGCAACAGCAGCA
GCAGCAACGACAGTCCTTCTTCGCTGCCTTCCCTTCCAGCCATACGCCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGGC
CCCCCCCTCCATCTCCTCGTTCTTGATACCGACAACCACTCTCTCTCTGA
AGCCCTCTGGCGGGAAATAGCGACGGCAGCAGCAGCAGCAGCAGCAGCGA
CCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAGGAGAGCTTAGAGCAC
CAAAAGCAGGAGCCAGAGTCACGAGATGCCGATGGTTGCGACGCCTTACT
CCCCGACGCCCCGAGTGTTTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGG
TGCCGGGCCCAACATGAGCAGCAACATCAGCAACAGCAGCAGCCGCAGCA
GCAGCAGCAGCAACAACAACAACAAGGAGGAGAAAGAGAAGGAGAACGAG
CCGCTCCTACTGGCGCCGGTGATTCTCATGTAACGGCGCATGTAACCCCT
TACCCGACGACGAGGAGGGGCAGATTGATCGACATCAGTCATCGACCCTA
CCACCACCATGACGGCCACTGCAGCGTTGCCGACAGCAGTAGCAGCACGA
ACAGCCCTGAGAAACAAGAATCCTCCTCCTCCTCCTCCTCCCCCCCTTCC
TCTTCCTCTTTCTCCCGCACCACGATCGTGACACGTATTGCTGCCGTGCA
CTGGCCCTCTTTCGGAAGAAGCAACGGCCTGAGCAGCAGCAACAGCAGCA
GCAGCAACGACAGTCCTTCTTCGCTGCCTTCCCTTCCAGCCATACGCCCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCGGGC
CCCCCCCTCCATCTCCTCGTTCTTGATACCGACAACCACTCTCTCTCTGA
AGCCCTCTGGCGGGAAATAGCGACGGCAGCAGCAGCAGCAGCAGCAGCGA
CCGCCGCGGCTAAGGTGCCGCAAGAAGAGGAACAGGAGAGCTTAGAGCAC
CAAAAGCAGGAGCCAGAGTCACGAGATGCCGATGGTTGCGACGCCTTACT
CCCCGACGCCCCGAGTGTTTTCAAGCAGCAGCAGCAGCAGCAGCAGCAGG
TGCCGGGCCCAACATGAGCAGCAACATCAGCAACAGCAGCAGCCGCAGCA
GCAGCAGCAGCAACAACAACAACAAGGAGGAGAAAGAGAAGGAGAACGAG
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Synonyms
Publications