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Properties
| Property Name | Value |
|---|
| TranscriptId | 576885 |
| Track | FilteredModels2 |
| ProteinId | 576799 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_3 | supercontig | scaffold_3:698356..700092 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_283 ID=mRNA_283|Name=jgi.p|Nanoce1779_2|576799|organism=Nannochloropsis oceanica|type=mRNA|length=948bp
ACAGGCTTCCCATGAGGAAACCCAGCGATCAGAATGACGAGGAGGAGGAG
GGCGAGGTGCGCGAAGACCAAGACAGTCACACCACTGCCATGGACGAGCA
AGACAACGATTTAGTGGAGGAGGAGGGGGGGATGGACGTGTCAGAGGCGG
CAGCGGGGCTTGTCCAAGCCGCACTCAACATAGCAGCGCCCGAGGTCCTG
CTTCCGGGAGACGTGAAGGAGGTGCCAGAGCACTTCTCAAGGGTCAAGCT
AGGCAATGGGCTAGTCAGCGCGCCCTCGCCACCTGGTGCAGCCAAGGCAA
CCAAGGCTGGCATCCTGCGTTTCCAACCGCCGAATACGTATCGAATCGAT
AACCAACAACGACGGTACATACCTAAGGGCGACGACACCGTGCTGGGCAT
TGTGGAAGACCGCGTGGCCGAGCACTACCGCATCAACATTTTCGGAAGCT
CTCCGGGTCTGTTGCCCCACTTGGCATTTGACGGTGCCTCGAAGCGGAAC
AAGCCGAATTTGAAGATTGGGGCCTTGGTGTACTGCCGCGTGGCCGTTGC
CAATAAAGACATGGATAGCGAACTAAGCTGCATGGTAACACAAGGCATCA
AAAAGGATTGGATGACGGGGGAGTCGACGTTTGGGGAGCTGAAAGACGGC
ACCGTCACACGATGTTCCCTAGGCCTCTGCCGACAGTTACTGAGTAAGAA
CTGCCGAGTGCTCCAGGCGTTGGCAAAGCAGCAGGTCCCTTTTGAGGTGG
CCGTCGGTCGAAATGGGGCCTTTTATGTGAACGCCGACGATCCACGGATT
ATCGTGGCTGTGGTTAACATTCTGTTGAACTCAGAGATGATTCATGACGG
GCACGATGCAATGGTGCGGTCCGTTCTGGCCTCAGTCTCTCATAAGCGGA
AAGCAAGAAGGCCAGCGTCATAAAGAAATTATGATAAAAATTCAGAAA back to topprotein sequence of jgi.p|Nanoce1779_2|576799 >mRNA_283-protein ID=mRNA_283-protein|Name=jgi.p|Nanoce1779_2|576799|organism=Nannochloropsis oceanica|type=polypeptide|length=304bp
MRKPSDQNDEEEEGEVREDQDSHTTAMDEQDNDLVEEEGGMDVSEAAAGL
VQAALNIAAPEVLLPGDVKEVPEHFSRVKLGNGLVSAPSPPGAAKATKAG
ILRFQPPNTYRIDNQQRRYIPKGDDTVLGIVEDRVAEHYRINIFGSSPGL
LPHLAFDGASKRNKPNLKIGALVYCRVAVANKDMDSELSCMVTQGIKKDW
MTGESTFGELKDGTVTRCSLGLCRQLLSKNCRVLQALAKQQVPFEVAVGR
NGAFYVNADDPRIIVAVVNILLNSEMIHDGHDAMVRSVLASVSHKRKARR
PAS* back to topmRNA from alignment at scaffold_3:698356..700092- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_283 ID=mRNA_283|Name=jgi.p|Nanoce1779_2|576799|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_3:698356..700092- (Nannochloropsis oceanica)
ACAGGCTTCCCATGAGGAAACCCAGCGATCAGAATGACGAGGAGGAGGAG
GGCGAGGTGCGCGAAGGTAAGTCCCGCGGACAAAATCTAAAATACGGAGC
ATCACGAAAGAGGTTAGGCCCTCCGGGAGGTTTGATATTATTCCCCCTCC
ATCCAATCTACACAGACCAAGACAGTCACACCACTGCCATGGACGAGCAA
GACAACGATTTAGTGGAGGAGGAGGGGGGGATGGACGTGTCAGAGGCGGC
AGCGGGGCTTGTCCAAGCCGCACTCAACATAGCAGCGCCCGAGGTCCTGC
TTCCGGGAGACGTGAAGGAGGTGCCAGAGCACTTCTCAAGGGTCAAGCTA
GGTGAGACGGTGACGGTAATGTCACATACTGCCACATATGTGAAGAAATT
ATGCCTAATTATACTATCCCTTATCTGGTGTACTAATTCTCTTTCTCCCT
CTCCTCCTTCCCCCTCCTATTTGACAGGCAATGGGCTAGTCAGCGCGCCC
TCGCCACCTGGTGCAGCCAAGGCAACCAAGGCTGGCATCCTGCGTTTCCA
ACCGCCGAATACGTATCGAATCGATAACCAACAACGACGGGTAAGTGATG
AAACACCTCAAATGTGATGGTGAAAAGGAAAGGAACTCAAATCCAGTTCT
ATCTCTTTGCTATCCATCTCTGTCCCCTCTCCTCTCCTTCATGCCATCTA
CCTTTCTTAGTACATACCTAAGGGCGACGACACCGTGCTGGGCATTGTGG
AAGACCGCGTGGCCGAGCACTACCGCATCAACATTTTCGGAAGGTAGGTG
CCGAAACAAGCCGAGGGATGAAGGAAGGCTAAGTAACAGCATGGCAAGAC
CACTGGTTCAAAAGTGAAAAGGGACTGCTTCAATATGCTCATTCTTACTT
CCACTCCTCATCTCTGCCCCTTATATATTTAGCTCTCCGGGTCTGTTGCC
CCACTTGGCATTTGACGGTGCCTCGAAGCGGAACAAGCCGAATTTGAAGA
TTGGGGCCTTGGTGTACTGCCGCGTGGCCGTTGCCAATAAAGACATGGAT
AGCGAACTAAGCTGCATGGGTAATGAGGCAGTTGGGAAAGGGAACGAGGG
AGGGATGGCTCGGGGCAGTATGCTTATTCAAATTTGAACTGAGCGGAAAT
CACTTCCCGTGCCTTTTCAGTTCCTGCAACACATGTTTTCATTTTCTCTG
GTTCGCACATTTTTTTTCAATTCATTCACAGTAACACAAGGCATCAAAAA
GGATTGGATGACGGGGGAGTCGACGTTTGGGGAGCTGAAAGACGGCACCG
TCACACGATGTTCCCTAGGCCTCTGCCGACAGTATGTAGCTTTGTTCAAT
GGTTCATTTCCGCTTTCCCCTTCCATCTCTTCCCCCTTTGTCCCCACATC
TTTCTAAGATAAGCTCTGTAAGCAATGTTCGACGCGCTCATTTCTTTCCA
TCTTTCCCTTTATTTCCTTCCCAGGTTACTGAGTAAGAACTGCCGAGTGC
TCCAGGCGTTGGCAAAGCAGCAGGTCCCTTTTGAGGTGGCCGTCGGTCGA
AATGGGGCCTTTTATGTGAACGCCGACGATCCACGGATTATCGTGGCTGT
GGTTAACATTCTGTTGAACTCAGAGATGATTCATGACGGGCACGATGCAA
TGGTGCGGTCCGTTCTGGCCTCAGTCTCTCATAAGCGGAAAGCAAGAAGG
CCAGCGTCATAAAGAAATTATGATAAAAATTCAGAAA back to topCoding sequence (CDS) from alignment at scaffold_3:698356..700092- >mRNA_283 ID=mRNA_283|Name=jgi.p|Nanoce1779_2|576799|organism=Nannochloropsis oceanica|type=CDS|length=6384bp|location=Sequence derived from alignment at scaffold_3:698356..700092- (Nannochloropsis oceanica)
GTTACTGAGTAAGAACTGCCGAGTGCTCCAGGCGTTGGCAAAGCAGCAGG
TCCCTTTTGAGGTGGCCGTCGGTCGAAATGGGGCCTTTTATGTGAACGCC
GACGATCCACGGATTATCGTGGCTGTGGTTAACATTCTGTTGAACTCAGA
GATGATTCATGACGGGCACGATGCAATGGTGCGGTCCGTTCTGGCCTCAG
TCTCTCATAAGCGGAAAGCAAGAAGGCCAGCGTCATAATAACACAAGGCA
TCAAAAAGGATTGGATGACGGGGGAGTCGACGTTTGGGGAGCTGAAAGAC
GGCACCGTCACACGATGTTCCCTAGGCCTCTGCCGACACTCTCCGGGTCT
GTTGCCCCACTTGGCATTTGACGGTGCCTCGAAGCGGAACAAGCCGAATT
TGAAGATTGGGGCCTTGGTGTACTGCCGCGTGGCCGTTGCCAATAAAGAC
ATGGATAGCGAACTAAGCTGCATGGTACATACCTAAGGGCGACGACACCG
TGCTGGGCATTGTGGAAGACCGCGTGGCCGAGCACTACCGCATCAACATT
TTCGGAAGGCAATGGGCTAGTCAGCGCGCCCTCGCCACCTGGTGCAGCCA
AGGCAACCAAGGCTGGCATCCTGCGTTTCCAACCGCCGAATACGTATCGA
ATCGATAACCAACAACGACGGACCAAGACAGTCACACCACTGCCATGGAC
GAGCAAGACAACGATTTAGTGGAGGAGGAGGGGGGGATGGACGTGTCAGA
GGCGGCAGCGGGGCTTGTCCAAGCCGCACTCAACATAGCAGCGCCCGAGG
TCCTGCTTCCGGGAGACGTGAAGGAGGTGCCAGAGCACTTCTCAAGGGTC
AAGCTAGATGAGGAAACCCAGCGATCAGAATGACGAGGAGGAGGAGGGCG
AGGTGCGCGAAGGTTACTGAGTAAGAACTGCCGAGTGCTCCAGGCGTTGG
CAAAGCAGCAGGTCCCTTTTGAGGTGGCCGTCGGTCGAAATGGGGCCTTT
TATGTGAACGCCGACGATCCACGGATTATCGTGGCTGTGGTTAACATTCT
GTTGAACTCAGAGATGATTCATGACGGGCACGATGCAATGGTGCGGTCCG
TTCTGGCCTCAGTCTCTCATAAGCGGAAAGCAAGAAGGCCAGCGTCATAA
TAACACAAGGCATCAAAAAGGATTGGATGACGGGGGAGTCGACGTTTGGG
GAGCTGAAAGACGGCACCGTCACACGATGTTCCCTAGGCCTCTGCCGACA
CTCTCCGGGTCTGTTGCCCCACTTGGCATTTGACGGTGCCTCGAAGCGGA
ACAAGCCGAATTTGAAGATTGGGGCCTTGGTGTACTGCCGCGTGGCCGTT
GCCAATAAAGACATGGATAGCGAACTAAGCTGCATGGTACATACCTAAGG
GCGACGACACCGTGCTGGGCATTGTGGAAGACCGCGTGGCCGAGCACTAC
CGCATCAACATTTTCGGAAGGCAATGGGCTAGTCAGCGCGCCCTCGCCAC
CTGGTGCAGCCAAGGCAACCAAGGCTGGCATCCTGCGTTTCCAACCGCCG
AATACGTATCGAATCGATAACCAACAACGACGGACCAAGACAGTCACACC
ACTGCCATGGACGAGCAAGACAACGATTTAGTGGAGGAGGAGGGGGGGAT
GGACGTGTCAGAGGCGGCAGCGGGGCTTGTCCAAGCCGCACTCAACATAG
CAGCGCCCGAGGTCCTGCTTCCGGGAGACGTGAAGGAGGTGCCAGAGCAC
TTCTCAAGGGTCAAGCTAGATGAGGAAACCCAGCGATCAGAATGACGAGG
AGGAGGAGGGCGAGGTGCGCGAAGGTTACTGAGTAAGAACTGCCGAGTGC
TCCAGGCGTTGGCAAAGCAGCAGGTCCCTTTTGAGGTGGCCGTCGGTCGA
AATGGGGCCTTTTATGTGAACGCCGACGATCCACGGATTATCGTGGCTGT
GGTTAACATTCTGTTGAACTCAGAGATGATTCATGACGGGCACGATGCAA
TGGTGCGGTCCGTTCTGGCCTCAGTCTCTCATAAGCGGAAAGCAAGAAGG
CCAGCGTCATAATAACACAAGGCATCAAAAAGGATTGGATGACGGGGGAG
TCGACGTTTGGGGAGCTGAAAGACGGCACCGTCACACGATGTTCCCTAGG
CCTCTGCCGACACTCTCCGGGTCTGTTGCCCCACTTGGCATTTGACGGTG
CCTCGAAGCGGAACAAGCCGAATTTGAAGATTGGGGCCTTGGTGTACTGC
CGCGTGGCCGTTGCCAATAAAGACATGGATAGCGAACTAAGCTGCATGGT
ACATACCTAAGGGCGACGACACCGTGCTGGGCATTGTGGAAGACCGCGTG
GCCGAGCACTACCGCATCAACATTTTCGGAAGGCAATGGGCTAGTCAGCG
CGCCCTCGCCACCTGGTGCAGCCAAGGCAACCAAGGCTGGCATCCTGCGT
TTCCAACCGCCGAATACGTATCGAATCGATAACCAACAACGACGGACCAA
GACAGTCACACCACTGCCATGGACGAGCAAGACAACGATTTAGTGGAGGA
GGAGGGGGGGATGGACGTGTCAGAGGCGGCAGCGGGGCTTGTCCAAGCCG
CACTCAACATAGCAGCGCCCGAGGTCCTGCTTCCGGGAGACGTGAAGGAG
GTGCCAGAGCACTTCTCAAGGGTCAAGCTAGATGAGGAAACCCAGCGATC
AGAATGACGAGGAGGAGGAGGGCGAGGTGCGCGAAGGTTACTGAGTAAGA
ACTGCCGAGTGCTCCAGGCGTTGGCAAAGCAGCAGGTCCCTTTTGAGGTG
GCCGTCGGTCGAAATGGGGCCTTTTATGTGAACGCCGACGATCCACGGAT
TATCGTGGCTGTGGTTAACATTCTGTTGAACTCAGAGATGATTCATGACG
GGCACGATGCAATGGTGCGGTCCGTTCTGGCCTCAGTCTCTCATAAGCGG
AAAGCAAGAAGGCCAGCGTCATAATAACACAAGGCATCAAAAAGGATTGG
ATGACGGGGGAGTCGACGTTTGGGGAGCTGAAAGACGGCACCGTCACACG
ATGTTCCCTAGGCCTCTGCCGACACTCTCCGGGTCTGTTGCCCCACTTGG
CATTTGACGGTGCCTCGAAGCGGAACAAGCCGAATTTGAAGATTGGGGCC
TTGGTGTACTGCCGCGTGGCCGTTGCCAATAAAGACATGGATAGCGAACT
AAGCTGCATGGTACATACCTAAGGGCGACGACACCGTGCTGGGCATTGTG
GAAGACCGCGTGGCCGAGCACTACCGCATCAACATTTTCGGAAGGCAATG
GGCTAGTCAGCGCGCCCTCGCCACCTGGTGCAGCCAAGGCAACCAAGGCT
GGCATCCTGCGTTTCCAACCGCCGAATACGTATCGAATCGATAACCAACA
ACGACGGACCAAGACAGTCACACCACTGCCATGGACGAGCAAGACAACGA
TTTAGTGGAGGAGGAGGGGGGGATGGACGTGTCAGAGGCGGCAGCGGGGC
TTGTCCAAGCCGCACTCAACATAGCAGCGCCCGAGGTCCTGCTTCCGGGA
GACGTGAAGGAGGTGCCAGAGCACTTCTCAAGGGTCAAGCTAGATGAGGA
AACCCAGCGATCAGAATGACGAGGAGGAGGAGGGCGAGGTGCGCGAAGGT
TACTGAGTAAGAACTGCCGAGTGCTCCAGGCGTTGGCAAAGCAGCAGGTC
CCTTTTGAGGTGGCCGTCGGTCGAAATGGGGCCTTTTATGTGAACGCCGA
CGATCCACGGATTATCGTGGCTGTGGTTAACATTCTGTTGAACTCAGAGA
TGATTCATGACGGGCACGATGCAATGGTGCGGTCCGTTCTGGCCTCAGTC
TCTCATAAGCGGAAAGCAAGAAGGCCAGCGTCATAATAACACAAGGCATC
AAAAAGGATTGGATGACGGGGGAGTCGACGTTTGGGGAGCTGAAAGACGG
CACCGTCACACGATGTTCCCTAGGCCTCTGCCGACACTCTCCGGGTCTGT
TGCCCCACTTGGCATTTGACGGTGCCTCGAAGCGGAACAAGCCGAATTTG
AAGATTGGGGCCTTGGTGTACTGCCGCGTGGCCGTTGCCAATAAAGACAT
GGATAGCGAACTAAGCTGCATGGTACATACCTAAGGGCGACGACACCGTG
CTGGGCATTGTGGAAGACCGCGTGGCCGAGCACTACCGCATCAACATTTT
CGGAAGGCAATGGGCTAGTCAGCGCGCCCTCGCCACCTGGTGCAGCCAAG
GCAACCAAGGCTGGCATCCTGCGTTTCCAACCGCCGAATACGTATCGAAT
CGATAACCAACAACGACGGACCAAGACAGTCACACCACTGCCATGGACGA
GCAAGACAACGATTTAGTGGAGGAGGAGGGGGGGATGGACGTGTCAGAGG
CGGCAGCGGGGCTTGTCCAAGCCGCACTCAACATAGCAGCGCCCGAGGTC
CTGCTTCCGGGAGACGTGAAGGAGGTGCCAGAGCACTTCTCAAGGGTCAA
GCTAGATGAGGAAACCCAGCGATCAGAATGACGAGGAGGAGGAGGGCGAG
GTGCGCGAAGGTTACTGAGTAAGAACTGCCGAGTGCTCCAGGCGTTGGCA
AAGCAGCAGGTCCCTTTTGAGGTGGCCGTCGGTCGAAATGGGGCCTTTTA
TGTGAACGCCGACGATCCACGGATTATCGTGGCTGTGGTTAACATTCTGT
TGAACTCAGAGATGATTCATGACGGGCACGATGCAATGGTGCGGTCCGTT
CTGGCCTCAGTCTCTCATAAGCGGAAAGCAAGAAGGCCAGCGTCATAATA
ACACAAGGCATCAAAAAGGATTGGATGACGGGGGAGTCGACGTTTGGGGA
GCTGAAAGACGGCACCGTCACACGATGTTCCCTAGGCCTCTGCCGACACT
CTCCGGGTCTGTTGCCCCACTTGGCATTTGACGGTGCCTCGAAGCGGAAC
AAGCCGAATTTGAAGATTGGGGCCTTGGTGTACTGCCGCGTGGCCGTTGC
CAATAAAGACATGGATAGCGAACTAAGCTGCATGGTACATACCTAAGGGC
GACGACACCGTGCTGGGCATTGTGGAAGACCGCGTGGCCGAGCACTACCG
CATCAACATTTTCGGAAGGCAATGGGCTAGTCAGCGCGCCCTCGCCACCT
GGTGCAGCCAAGGCAACCAAGGCTGGCATCCTGCGTTTCCAACCGCCGAA
TACGTATCGAATCGATAACCAACAACGACGGACCAAGACAGTCACACCAC
TGCCATGGACGAGCAAGACAACGATTTAGTGGAGGAGGAGGGGGGGATGG
ACGTGTCAGAGGCGGCAGCGGGGCTTGTCCAAGCCGCACTCAACATAGCA
GCGCCCGAGGTCCTGCTTCCGGGAGACGTGAAGGAGGTGCCAGAGCACTT
CTCAAGGGTCAAGCTAGATGAGGAAACCCAGCGATCAGAATGACGAGGAG
GAGGAGGGCGAGGTGCGCGAAGGTTACTGAGTAAGAACTGCCGAGTGCTC
CAGGCGTTGGCAAAGCAGCAGGTCCCTTTTGAGGTGGCCGTCGGTCGAAA
TGGGGCCTTTTATGTGAACGCCGACGATCCACGGATTATCGTGGCTGTGG
TTAACATTCTGTTGAACTCAGAGATGATTCATGACGGGCACGATGCAATG
GTGCGGTCCGTTCTGGCCTCAGTCTCTCATAAGCGGAAAGCAAGAAGGCC
AGCGTCATAATAACACAAGGCATCAAAAAGGATTGGATGACGGGGGAGTC
GACGTTTGGGGAGCTGAAAGACGGCACCGTCACACGATGTTCCCTAGGCC
TCTGCCGACACTCTCCGGGTCTGTTGCCCCACTTGGCATTTGACGGTGCC
TCGAAGCGGAACAAGCCGAATTTGAAGATTGGGGCCTTGGTGTACTGCCG
CGTGGCCGTTGCCAATAAAGACATGGATAGCGAACTAAGCTGCATGGTAC
ATACCTAAGGGCGACGACACCGTGCTGGGCATTGTGGAAGACCGCGTGGC
CGAGCACTACCGCATCAACATTTTCGGAAGGCAATGGGCTAGTCAGCGCG
CCCTCGCCACCTGGTGCAGCCAAGGCAACCAAGGCTGGCATCCTGCGTTT
CCAACCGCCGAATACGTATCGAATCGATAACCAACAACGACGGACCAAGA
CAGTCACACCACTGCCATGGACGAGCAAGACAACGATTTAGTGGAGGAGG
AGGGGGGGATGGACGTGTCAGAGGCGGCAGCGGGGCTTGTCCAAGCCGCA
CTCAACATAGCAGCGCCCGAGGTCCTGCTTCCGGGAGACGTGAAGGAGGT
GCCAGAGCACTTCTCAAGGGTCAAGCTAGATGAGGAAACCCAGCGATCAG
AATGACGAGGAGGAGGAGGGCGAGGTGCGCGAAG back to top
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