jgi.p|Nanoce1779_2|583477, mRNA_2826 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583477
Unique NamemRNA_2826
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length400
Alignment locationscaffold_7:19148..20302 -

Link to JBrowse

Properties
Property NameValue
TranscriptId583563
TrackFilteredModels2
ProteinId583477
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:19148..20302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583477gene_2826Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583477mRNA_2826-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2826CDS_2826Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2826 ID=mRNA_2826|Name=jgi.p|Nanoce1779_2|583477|organism=Nannochloropsis oceanica|type=mRNA|length=400bp
GGGTCAGTCCCTTGCAGGAAGCTCAGATGCTGGCCGCGCATGAGGGAGGG
GGAGGGGGAGGGGGAGAGGGGACAAGCGATGATCTGGACGAACCTATCGC
CGAATTGTTTCAGGATAAAGATTATAGGTCCCACCACTGCCTAGGCAGTC
TCAACAGTGTCAACATTCGGAGATTGGCAAGTCGATGGAAAGGTTTTACG
CAGGGGGGTCGACGGCCCTCCCTCCCTCCCTCCTTCGGCACCTCATCGGT
TGGGGAGTGGAGTGTGCTTTACCTGTGAGGGAGGAGGAGGTAGAAGCCAC
CATTCAAGCAGTCTATGAGGGAGGGAATAAGGGCGGGAAGGAGGATGGGA
GGTATCTCCTGGACCCACACACGGCCGTGGGTGTGACGGTGGCAGCAGGG
back to top

protein sequence of jgi.p|Nanoce1779_2|583477

>mRNA_2826-protein ID=mRNA_2826-protein|Name=jgi.p|Nanoce1779_2|583477|organism=Nannochloropsis oceanica|type=polypeptide|length=71bp
EGTSDDLDEPIAELFQDKDYRSHHCLGSLNSVNIRRLASRWKGFTQGGRR
PSLPPSFGTSSVGEWSVLYL*
back to top

mRNA from alignment at scaffold_7:19148..20302-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2826 ID=mRNA_2826|Name=jgi.p|Nanoce1779_2|583477|organism=Nannochloropsis oceanica|type=mRNA|length=1155bp|location=Sequence derived from alignment at scaffold_7:19148..20302- (Nannochloropsis oceanica)
GGGTCAGTCCCTTGCAGGAAGCTCAGATGCTGGCCGCGCATGAGGGAGGG
GGAGGGGGAGGGGGAGGGGGAGGGGGAGGGGGGGAGGAAGAAGGAAGGGA
AGAAGAGGGGGGAACGTGCGGGTGGTGGCAGTGGAGGGGACAAGCGATGA
TCTGGACGAACCTATCGCCGAATTGTTTCAGGATAAAGATTATAGGTATG
GCCTGTCTGCTTGTCTTTTCCTCCCTCCCTCCCTCCCTCCCTTCCTCGCT
CCTTCCCTCGCTCTCTACGCGCTTGACAGCGCGTGCTATTCTCTCCCTCG
ATCCCTCAATCCCTGCCTCCCTCCCTTGGCATCTGTTGAAAACAAGTCTA
CCTACCCACACATGTCGCTGCTCCACTTAACTAACCCCTCGTTCCCTCCC
TCACCTCCCTCCGTCCTTCTCTCCCTCCCTCCCTTCAGGTCCCACCACTG
CCTAGGCAGTCTCAACAGTGTCAACATTCGTGCGTCTCCTGGTTCAAATC
TTTCACTATTTATGCCTACCTCCACCTCATTTCCCCCCGAGGAGGGAGGG
AGGGAGGGAGGGAGGGGAGGGAGGGAGGAAGGAAAGTAGGGTCAGTAGTA
CCTGCTTCCCCCTTGCCACTCCTCTCGTTTGTTGTGCCTACGGGCGCGGC
AGGACATATCACAGCGGGTTTATTGGCAGCGATGATGGGCCTGCCCGTGC
ATCGTCTCCTCATGGCCACGAATCGCAACGGAGTTGTCTTAAGCCGGGTG
GTCAGGGAGGGGGTGTGGGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGT
GATCCAGACGAATAGTCCAGCGATGGACATTCAAAGCGCTTATAACGTGG
AGAGAATCTTGAGTCTCTTGGCAAGGGAGGGAGGGAGGGGAGGGGGGGGG
GGGGATGTCCCTCTGACAGGCAGGGAGATTGGCAAGTCGATGGAAAGGTT
TTACGCAGGGGGGTCGACGGCCCTCCCTCCCTCCCTCCTTCGGCACCTCA
TCGGTTGGGGAGTGGAGTGTGCTTTACCTGTGAGGGAGGAGGAGGTAGAA
GCCACCATTCAAGCAGTCTATGAGGGAGGGAATAAGGGCGGGAAGGAGGA
TGGGAGGTATCTCCTGGACCCACACACGGCCGTGGGTGTGACGGTGGCAG
CAGGG
back to top

Coding sequence (CDS) from alignment at scaffold_7:19148..20302-

>mRNA_2826 ID=mRNA_2826|Name=jgi.p|Nanoce1779_2|583477|organism=Nannochloropsis oceanica|type=CDS|length=639bp|location=Sequence derived from alignment at scaffold_7:19148..20302- (Nannochloropsis oceanica)
GGAGATTGGCAAGTCGATGGAAAGGTTTTACGCAGGGGGGTCGACGGCCC
TCCCTCCCTCCCTCCTTCGGCACCTCATCGGTTGGGGAGTGGAGTGTGCT
TTACCTGTGAGTCCCACCACTGCCTAGGCAGTCTCAACAGTGTCAACATT
CGAGGGGACAAGCGATGATCTGGACGAACCTATCGCCGAATTGTTTCAGG
ATAAAGATTATAGGGAGATTGGCAAGTCGATGGAAAGGTTTTACGCAGGG
GGGTCGACGGCCCTCCCTCCCTCCCTCCTTCGGCACCTCATCGGTTGGGG
AGTGGAGTGTGCTTTACCTGTGAGTCCCACCACTGCCTAGGCAGTCTCAA
CAGTGTCAACATTCGAGGGGACAAGCGATGATCTGGACGAACCTATCGCC
GAATTGTTTCAGGATAAAGATTATAGGGAGATTGGCAAGTCGATGGAAAG
GTTTTACGCAGGGGGGTCGACGGCCCTCCCTCCCTCCCTCCTTCGGCACC
TCATCGGTTGGGGAGTGGAGTGTGCTTTACCTGTGAGTCCCACCACTGCC
TAGGCAGTCTCAACAGTGTCAACATTCGAGGGGACAAGCGATGATCTGGA
CGAACCTATCGCCGAATTGTTTCAGGATAAAGATTATAG
back to top
Synonyms
Publications