jgi.p|Nanoce1779_2|583476, mRNA_2825 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583476
Unique NamemRNA_2825
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length691
Alignment locationscaffold_7:17784..18749 -

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Properties
Property NameValue
TranscriptId583562
TrackFilteredModels2
ProteinId583476
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:17784..18749 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583476gene_2825Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583476mRNA_2825-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2825CDS_2825Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2825 ID=mRNA_2825|Name=jgi.p|Nanoce1779_2|583476|organism=Nannochloropsis oceanica|type=mRNA|length=691bp
ATGGAGAGAGAGAGGACAAAGAGGAGGAAGAGGAAAGTGATATACAGCCA
CCTTTTGGCTTCAAAGCGTGTCATTCGCTCGGGAAAATGTCTAGTTGTTA
TTGTGCATTTCTCTTTTGTTTACCTCATTCTATTGTCTTTCATTTTTCAC
TTCCTCGTGGTGGCTGATGGCCCCATTTCGAGTTTGATTCTACGTGTTCA
TCTCATTCCCTTCTATCCCTCTCGATGTCGTCATCTCTACATCTTATTTA
ATGCTGTTAATGCTGTCCTGCAAGGCCATTCCTCTGTTTTCAAGACTCTT
CCGCCAATACTCTTTCATGTGACCATCTCTATCCTTATATTTAAGGCTGT
GGAAAAGGGCGAAAAAAGAGAGAGGGAGGGAGGAAAGGAGGAAGGGCTAG
TTGACCAGCATCCCCACCTTTTGCATCCAGACGACAACAACCACGACGGA
AAATACAATAAGGGAGCCGACGGCCCGTGGTGACGCGAGAATGAAAGATT
GAGTGTGAGACAGGACTGCCACTGTCCTCGTCCAGGCCGTTGTTGAGGTT
CATCCCTTGGGGGGGATGGGGAGGGAATGATGAGGAGGGAAGGGGTGATG
ATTAGAAGAATGGATTTTCCCATGAGAAGACAGAAAAAGAGGGGGGGAAA
GGAGAGGGAGGGAGGACAGAAAGGAGGGACGGAGGGACGGA
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protein sequence of jgi.p|Nanoce1779_2|583476

>mRNA_2825-protein ID=mRNA_2825-protein|Name=jgi.p|Nanoce1779_2|583476|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MERERTKRRKRKVIYSHLLASKRVIRSGKCLVVIVHFSFVYLILLSFIFH
FLVVADGPISSLILRVHLIPFYPSRCRHLYILFNAVNAVLQGHSSVFKTL
PPILFHVTISILIFKAVEKGEKREREGGKEEGLVDQHPHLLHPDDNNHDG
KYNKGADGPW*
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mRNA from alignment at scaffold_7:17784..18749-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2825 ID=mRNA_2825|Name=jgi.p|Nanoce1779_2|583476|organism=Nannochloropsis oceanica|type=mRNA|length=966bp|location=Sequence derived from alignment at scaffold_7:17784..18749- (Nannochloropsis oceanica)
ATGGAGAGAGAGAGGACAAAGAGGAGGAAGAGGAAAGTGATATACAGCCA
CCTTTTGGCTTCAAAGCGTGTCATTCGCTCGGGAAAATGTCTAGTTGTTA
TTGTGCATTTCTCTTTTGTTTACCTCATTCTATTGTCTTTCATTTTTCAC
TTCCTCGTGGTGGCTGATGGCCCCATTTCGAGTTTGATTCTACGTGTTCA
TCTCATTCCCTTCTATCCCTCTCGATGTCGTCATCTCTACATCTTATTTA
ATGCTGTTAATGCTGTCCTGCAAGGCCATTCCTCTGTTTTCAAGACTCTT
CCGCCAATACTCTTTCATGTGACCATCTCTATCCTTATATTTAAGGCTGT
GGTATGTGGTCATCCGCCTTGTGTCGAAGGCTCTTTCAGTCATCTACCTC
CTCATTTAAGGCTGTGGTATGTGGCCATCTACCTTGCATATAGTATTGAA
GGCAGCCAGCCTTGATGTTTCCATTTCTCTTCGAAACACCTGCCTGGGTT
ATGGCACCCTTCCCCTCACGTACTTCTCGGTGATCTTTGGTCTTCTATTC
ATTCTATTTCACACATGTTTTGGTAGCGCACTTGTCCATGCCTCCTTCGA
TTGCCTTCTCGCTTCATATTCTCGAGGAAAAGGGCGAAAAAAGAGAGAGG
GAGGGAGGAAAGGAGGAAGGGCTAGTTGACCAGCATCCCCACCTTTTGCA
TCCAGACGACAACAACCACGACGGAAAATACAATAAGGGAGCCGACGGCC
CGTGGTGACGCGAGAATGAAAGATTGAGTGTGAGACAGGACTGCCACTGT
CCTCGTCCAGGCCGTTGTTGAGGTTCATCCCTTGGGGGGGATGGGGAGGG
AATGATGAGGAGGGAAGGGGTGATGATTAGAAGAATGGATTTTCCCATGA
GAAGACAGAAAAAGAGGGGGGGAAAGGAGAGGGAGGGAGGACAGAAAGGA
GGGACGGAGGGACGGA
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Coding sequence (CDS) from alignment at scaffold_7:17784..18749-

>mRNA_2825 ID=mRNA_2825|Name=jgi.p|Nanoce1779_2|583476|organism=Nannochloropsis oceanica|type=CDS|length=966bp|location=Sequence derived from alignment at scaffold_7:17784..18749- (Nannochloropsis oceanica)
GAAAAGGGCGAAAAAAGAGAGAGGGAGGGAGGAAAGGAGGAAGGGCTAGT
TGACCAGCATCCCCACCTTTTGCATCCAGACGACAACAACCACGACGGAA
AATACAATAAGGGAGCCGACGGCCCGTGGTGAATGGAGAGAGAGAGGACA
AAGAGGAGGAAGAGGAAAGTGATATACAGCCACCTTTTGGCTTCAAAGCG
TGTCATTCGCTCGGGAAAATGTCTAGTTGTTATTGTGCATTTCTCTTTTG
TTTACCTCATTCTATTGTCTTTCATTTTTCACTTCCTCGTGGTGGCTGAT
GGCCCCATTTCGAGTTTGATTCTACGTGTTCATCTCATTCCCTTCTATCC
CTCTCGATGTCGTCATCTCTACATCTTATTTAATGCTGTTAATGCTGTCC
TGCAAGGCCATTCCTCTGTTTTCAAGACTCTTCCGCCAATACTCTTTCAT
GTGACCATCTCTATCCTTATATTTAAGGCTGTGGAAAAGGGCGAAAAAAG
AGAGAGGGAGGGAGGAAAGGAGGAAGGGCTAGTTGACCAGCATCCCCACC
TTTTGCATCCAGACGACAACAACCACGACGGAAAATACAATAAGGGAGCC
GACGGCCCGTGGTGAATGGAGAGAGAGAGGACAAAGAGGAGGAAGAGGAA
AGTGATATACAGCCACCTTTTGGCTTCAAAGCGTGTCATTCGCTCGGGAA
AATGTCTAGTTGTTATTGTGCATTTCTCTTTTGTTTACCTCATTCTATTG
TCTTTCATTTTTCACTTCCTCGTGGTGGCTGATGGCCCCATTTCGAGTTT
GATTCTACGTGTTCATCTCATTCCCTTCTATCCCTCTCGATGTCGTCATC
TCTACATCTTATTTAATGCTGTTAATGCTGTCCTGCAAGGCCATTCCTCT
GTTTTCAAGACTCTTCCGCCAATACTCTTTCATGTGACCATCTCTATCCT
TATATTTAAGGCTGTG
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Synonyms
Publications