jgi.p|Nanoce1779_2|663989, mRNA_2824 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|663989
Unique NamemRNA_2824
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length529
Alignment locationscaffold_7:9514..10607 -

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Properties
Property NameValue
TranscriptId664075
TrackFilteredModels2
ProteinId663989
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:9514..10607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663989gene_2824Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|663989mRNA_2824-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2824CDS_2824Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2824 ID=mRNA_2824|Name=jgi.p|Nanoce1779_2|663989|organism=Nannochloropsis oceanica|type=mRNA|length=529bp
ATGCTCCTGGCTCTGAAGCTTCTAGTGGTCCTCGGCGTCCTTTCGTACGG
CGTGGCCGCGGTGCTGGCCGGAGGGGACAACGCAAAAGCCGGCGTCCACA
AGGCATTGACCCGTCAGAGACAGCAGCCCACGGGCGCCACGGGCAGCTTC
TTTGATTACTGGGGAGACTCCAAATTAATCACCACGCTCCTCCCCCGGCA
CCTCCTCCAAGACGCACAAGCACACCCAGATGCTCTGGCCGTAGAAGACC
TCGCTCGTTTAGCGTCCATGGCACGACACGCCGCGCGCCTCTACGCCCGT
GAACGGAGCAGTCTCCCCCTGAGGCTGGCAGCTGGCCTCTACGATGGGTG
TTCGTCACCTCTCGACCTTCGGTCGCTGGTCGTGGACCGGGATGAGCTAT
GAGGAGGTTTGGTGCAAGTACGAAGGGAAGATAAAGGAGGAACTGCGGAG
GGCCGGGCGGGAGGGCGAGGTGGGGAGACAGGAGATGAATCGGATGGTGG
CATTGCGGATCTTGCAGAAGAGCTGTGAG
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protein sequence of jgi.p|Nanoce1779_2|663989

>mRNA_2824-protein ID=mRNA_2824-protein|Name=jgi.p|Nanoce1779_2|663989|organism=Nannochloropsis oceanica|type=polypeptide|length=134bp
MLLALKLLVVLGVLSYGVAAVLAGGDNAKAGVHKALTRQRQQPTGATGSF
FDYWGDSKLITTLLPRHLLQDAQAHPDALAVEDLARLASMARHAARLYAR
ERSSLPLRLAAGLYDGCSSPLDLRSLVVDRDEL*
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mRNA from alignment at scaffold_7:9514..10607-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2824 ID=mRNA_2824|Name=jgi.p|Nanoce1779_2|663989|organism=Nannochloropsis oceanica|type=mRNA|length=1094bp|location=Sequence derived from alignment at scaffold_7:9514..10607- (Nannochloropsis oceanica)
ATGCTCCTGGCTCTGAAGCTTCTAGTGGTCCTCGGCGTCCTTTCGTACGG
CGTGGCCGCGGTGCTGGCCGGAGGGGACAACGTAGTCCTCGCTGGCTTCC
AAGCCCCCCTCAACCACATTTTAAGAGGCGGCCGATTCTACCACACCTCT
TCCTCCTCTTCCACCACCACCACCTCCTCCTCCTCCTCCTCCTCTACCAA
CTCCCCTTATCCTGCCTCTCATCATCAACCAGATGGAAGCGCCGATTTGC
TCCTTAGGAGGCCACGAACTTCCAGAAAAGACCCCTCGCTTTATAGGCAA
AAGCCGGCGTCCACAAGGCATTGACCCGTCAGAGACAGCAGCCCACGGGC
GCCACGGGCAGCTTCTTTGATTACTGGGGAGACTCCAAATTAATCACCAC
GGTGGACGGCTTGAGGACGAAGCACGGGTAGGGAGGGACGGAGGGAGGAT
GAGATAACTTGTAGTGATGTCTGATACGGGCTAAAGCTCTCACTTTTTTA
ATGAAATCAATTAATTGTTGGCGGCCACGTCCCCTCACATTCCTCTTGTT
CCTCCCTTCTTCGTCCAGGGAAGGCACCTTCTGGGGAGACCTTAATCACA
TCGAGACGCGCTTTCGTCTACCACCAGCTCCTCCCCCGGCACCTCCTCCA
AGACGCACAAGCACACCCAGATGCTCTGGCCGTAGAAGACCTCGCTCGTT
TAGCGTCCATGGCACGACACGCCGCGCGCCTCTACGCCCGTGAACGGAGC
AGTCTCCCCCTGAGGCTGGCAGCTGGTAGGTCCTCCCCCCTTCCCCCTTT
TCCTCCGTCCCTCTCCCAAACTCCACTCCTTGCCTTTCTTTCTCCAGCGG
CTTCCTCTCCGCTGACTCCTTCTCCCCCCCTTCTTTCTCCCTCCCGCAGG
CCTCTACGATGGGTGTTCGTCACCTCTCGACCTTCGGTCGCTGGTCGTGG
ACCGGGATGAGCTATGAGGAGGTTTGGTGCAAGTACGAAGGGAAGATAAA
GGAGGAACTGCGGAGGGCCGGGCGGGAGGGCGAGGTGGGGAGACAGGAGA
TGAATCGGATGGTGGCATTGCGGATCTTGCAGAAGAGCTGTGAG
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Coding sequence (CDS) from alignment at scaffold_7:9514..10607-

>mRNA_2824 ID=mRNA_2824|Name=jgi.p|Nanoce1779_2|663989|organism=Nannochloropsis oceanica|type=CDS|length=1608bp|location=Sequence derived from alignment at scaffold_7:9514..10607- (Nannochloropsis oceanica)
GCCTCTACGATGGGTGTTCGTCACCTCTCGACCTTCGGTCGCTGGTCGTG
GACCGGGATGAGCTATGACTCCTCCCCCGGCACCTCCTCCAAGACGCACA
AGCACACCCAGATGCTCTGGCCGTAGAAGACCTCGCTCGTTTAGCGTCCA
TGGCACGACACGCCGCGCGCCTCTACGCCCGTGAACGGAGCAGTCTCCCC
CTGAGGCTGGCAGCTGGCAAAAGCCGGCGTCCACAAGGCATTGACCCGTC
AGAGACAGCAGCCCACGGGCGCCACGGGCAGCTTCTTTGATTACTGGGGA
GACTCCAAATTAATCACCACGATGCTCCTGGCTCTGAAGCTTCTAGTGGT
CCTCGGCGTCCTTTCGTACGGCGTGGCCGCGGTGCTGGCCGGAGGGGACA
ACGCCTCTACGATGGGTGTTCGTCACCTCTCGACCTTCGGTCGCTGGTCG
TGGACCGGGATGAGCTATGACTCCTCCCCCGGCACCTCCTCCAAGACGCA
CAAGCACACCCAGATGCTCTGGCCGTAGAAGACCTCGCTCGTTTAGCGTC
CATGGCACGACACGCCGCGCGCCTCTACGCCCGTGAACGGAGCAGTCTCC
CCCTGAGGCTGGCAGCTGGCAAAAGCCGGCGTCCACAAGGCATTGACCCG
TCAGAGACAGCAGCCCACGGGCGCCACGGGCAGCTTCTTTGATTACTGGG
GAGACTCCAAATTAATCACCACGATGCTCCTGGCTCTGAAGCTTCTAGTG
GTCCTCGGCGTCCTTTCGTACGGCGTGGCCGCGGTGCTGGCCGGAGGGGA
CAACGCCTCTACGATGGGTGTTCGTCACCTCTCGACCTTCGGTCGCTGGT
CGTGGACCGGGATGAGCTATGACTCCTCCCCCGGCACCTCCTCCAAGACG
CACAAGCACACCCAGATGCTCTGGCCGTAGAAGACCTCGCTCGTTTAGCG
TCCATGGCACGACACGCCGCGCGCCTCTACGCCCGTGAACGGAGCAGTCT
CCCCCTGAGGCTGGCAGCTGGCAAAAGCCGGCGTCCACAAGGCATTGACC
CGTCAGAGACAGCAGCCCACGGGCGCCACGGGCAGCTTCTTTGATTACTG
GGGAGACTCCAAATTAATCACCACGATGCTCCTGGCTCTGAAGCTTCTAG
TGGTCCTCGGCGTCCTTTCGTACGGCGTGGCCGCGGTGCTGGCCGGAGGG
GACAACGCCTCTACGATGGGTGTTCGTCACCTCTCGACCTTCGGTCGCTG
GTCGTGGACCGGGATGAGCTATGACTCCTCCCCCGGCACCTCCTCCAAGA
CGCACAAGCACACCCAGATGCTCTGGCCGTAGAAGACCTCGCTCGTTTAG
CGTCCATGGCACGACACGCCGCGCGCCTCTACGCCCGTGAACGGAGCAGT
CTCCCCCTGAGGCTGGCAGCTGGCAAAAGCCGGCGTCCACAAGGCATTGA
CCCGTCAGAGACAGCAGCCCACGGGCGCCACGGGCAGCTTCTTTGATTAC
TGGGGAGACTCCAAATTAATCACCACGATGCTCCTGGCTCTGAAGCTTCT
AGTGGTCCTCGGCGTCCTTTCGTACGGCGTGGCCGCGGTGCTGGCCGGAG
GGGACAAC
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Synonyms
Publications