jgi.p|Nanoce1779_2|341214, mRNA_2822 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|341214
Unique NamemRNA_2822
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1497
Alignment locationscaffold_5:1288132..1289628 +

Link to JBrowse

Properties
Property NameValue
TranscriptId341300
TrackFilteredModels2
ProteinId341214
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1288132..1289628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|341214gene_2822Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|341214mRNA_2822-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2822CDS_2822Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2822 ID=mRNA_2822|Name=jgi.p|Nanoce1779_2|341214|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp
GCCACCAGCCCTCCTCTGCCTAATCATTGATCTACCATCCCCCCTACAGA
CAATTTTGCTGAAACCACTATTCTTCAAATTGGTTTGATAATATTTCCAT
GATATCTCATATCCCCGTCGAAGTCAAGAAATTTTGTGAATTTCTTTCTA
GTCGATATATCCTTCGTCATCTGGTCCTTGCATGCATCGGAATGTATTTC
ATGACGGTCTGGATGGAAGGTTCCATATCCATCACACATTCTGATTATCG
TGCCTTCGAACAGCTGGGATCAGCTTTAATTTCCCCCGGAGTACTCGAAC
CTGCATACATTCAATTATGGCCAACAATTTCACACCTACCGTGCAATTTG
ACGCTCATACAGACTGGACCATTATCAGGTTTCCTTGAACATAGTGGAAA
TTGTCAAGGGTTCATCGCAAGCGTGATTTTGATTAATGTTGAGAGCGGTC
ATCGACAGGCAGCAGAGATTGTCAAGCCCAACAAAATTAATTGGCGGGTA
CCGATGGAGAAGATCACCCAGGCGTTGCTCACGCTCTACTCTAACGTGCT
ACCCGACGAGCTCTTGCAAGAGGTGGAATGGGTAAAGAATGACACCATTC
TGTATCACCCCACAATTGTGGCGATCAACGCGTCTGTTATTGATCAGATA
CAAATCGCTGCAAGTATGGCTAAGGATGGCATGAATGGCATGCAGCGTGG
TGATTCAATTATGTGGGAAAAACATATCGTTCGTGGACTCTCCAGGGACT
TTAATCTGTCTTGCTACCACGCTGCTCAATTCAAAAACATATGGATTGTC
GGGACCTCTGAGAGCCGACGATTGTTCGACCACATATGTTCCGCAATTTT
CAGCACGACCCCAATTTTGGAAAAAACGACGATGACATCGCAATGTGGCA
ATATACACTTTGTCAACACCTGCCAATGGGACTGCGGATGTAATTTCACC
GCATTCTTTGACTCCTTAGGACATGATCGCTCCGGACAATTCATCAGTGT
ATCTTGTGGTCTACACAGTGAGTATCTTAAAGGTTCAAGCTATTTAGAGG
TAAGCTTGCATGCATTAAGCGATCGGGCACAGCGCCTCAAACTTAATCAA
ACGAGGGTCCAGTTTCGAGTCTCCAACGCAGTTAATCCATTCAAGACTGT
CCCCCAAAAGTTGGCGATCGCGCGAAATAATTTTAGGTATCAAATGTTTA
GAGATATGGCGCTATCGACACTTCTGGCTTCCGATGTCCATATAATAGAT
GCATTTCGAATTTCGGAGCCTGTTTTCGATCTATCCGAAGACCACGTTCA
CTTTCCCCCGTGGGTATACGGTGAATTGGCGAGAATATTTTTAAATAGTC
TTTGCGACGTCCAATTCAAAATTTGATAAGAGTATCTCTTTGATATCTGT
CAGGAGTGTCCCAAGAAATTAGCTCAAAAATTAAGGAAGAGCCCAGAATC
GAACATTTCCTGAAAGTAGTGTTAGTGGAACTATAGGTAGTGTCAGG
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protein sequence of jgi.p|Nanoce1779_2|341214

>mRNA_2822-protein ID=mRNA_2822-protein|Name=jgi.p|Nanoce1779_2|341214|organism=Nannochloropsis oceanica|type=polypeptide|length=426bp
MISHIPVEVKKFCEFLSSRYILRHLVLACIGMYFMTVWMEGSISITHSDY
RAFEQLGSALISPGVLEPAYIQLWPTISHLPCNLTLIQTGPLSGFLEHSG
NCQGFIASVILINVESGHRQAAEIVKPNKINWRVPMEKITQALLTLYSNV
LPDELLQEVEWVKNDTILYHPTIVAINASVIDQIQIAASMAKDGMNGMQR
GDSIMWEKHIVRGLSRDFNLSCYHAAQFKNIWIVGTSESRRLFDHICSAI
FSTTPILEKTTMTSQCGNIHFVNTCQWDCGCNFTAFFDSLGHDRSGQFIS
VSCGLHSEYLKGSSYLEVSLHALSDRAQRLKLNQTRVQFRVSNAVNPFKT
VPQKLAIARNNFRYQMFRDMALSTLLASDVHIIDAFRISEPVFDLSEDHV
HFPPWVYGELARIFLNSLCDVQFKI*
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mRNA from alignment at scaffold_5:1288132..1289628+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2822 ID=mRNA_2822|Name=jgi.p|Nanoce1779_2|341214|organism=Nannochloropsis oceanica|type=mRNA|length=1497bp|location=Sequence derived from alignment at scaffold_5:1288132..1289628+ (Nannochloropsis oceanica)
GCCACCAGCCCTCCTCTGCCTAATCATTGATCTACCATCCCCCCTACAGA
CAATTTTGCTGAAACCACTATTCTTCAAATTGGTTTGATAATATTTCCAT
GATATCTCATATCCCCGTCGAAGTCAAGAAATTTTGTGAATTTCTTTCTA
GTCGATATATCCTTCGTCATCTGGTCCTTGCATGCATCGGAATGTATTTC
ATGACGGTCTGGATGGAAGGTTCCATATCCATCACACATTCTGATTATCG
TGCCTTCGAACAGCTGGGATCAGCTTTAATTTCCCCCGGAGTACTCGAAC
CTGCATACATTCAATTATGGCCAACAATTTCACACCTACCGTGCAATTTG
ACGCTCATACAGACTGGACCATTATCAGGTTTCCTTGAACATAGTGGAAA
TTGTCAAGGGTTCATCGCAAGCGTGATTTTGATTAATGTTGAGAGCGGTC
ATCGACAGGCAGCAGAGATTGTCAAGCCCAACAAAATTAATTGGCGGGTA
CCGATGGAGAAGATCACCCAGGCGTTGCTCACGCTCTACTCTAACGTGCT
ACCCGACGAGCTCTTGCAAGAGGTGGAATGGGTAAAGAATGACACCATTC
TGTATCACCCCACAATTGTGGCGATCAACGCGTCTGTTATTGATCAGATA
CAAATCGCTGCAAGTATGGCTAAGGATGGCATGAATGGCATGCAGCGTGG
TGATTCAATTATGTGGGAAAAACATATCGTTCGTGGACTCTCCAGGGACT
TTAATCTGTCTTGCTACCACGCTGCTCAATTCAAAAACATATGGATTGTC
GGGACCTCTGAGAGCCGACGATTGTTCGACCACATATGTTCCGCAATTTT
CAGCACGACCCCAATTTTGGAAAAAACGACGATGACATCGCAATGTGGCA
ATATACACTTTGTCAACACCTGCCAATGGGACTGCGGATGTAATTTCACC
GCATTCTTTGACTCCTTAGGACATGATCGCTCCGGACAATTCATCAGTGT
ATCTTGTGGTCTACACAGTGAGTATCTTAAAGGTTCAAGCTATTTAGAGG
TAAGCTTGCATGCATTAAGCGATCGGGCACAGCGCCTCAAACTTAATCAA
ACGAGGGTCCAGTTTCGAGTCTCCAACGCAGTTAATCCATTCAAGACTGT
CCCCCAAAAGTTGGCGATCGCGCGAAATAATTTTAGGTATCAAATGTTTA
GAGATATGGCGCTATCGACACTTCTGGCTTCCGATGTCCATATAATAGAT
GCATTTCGAATTTCGGAGCCTGTTTTCGATCTATCCGAAGACCACGTTCA
CTTTCCCCCGTGGGTATACGGTGAATTGGCGAGAATATTTTTAAATAGTC
TTTGCGACGTCCAATTCAAAATTTGATAAGAGTATCTCTTTGATATCTGT
CAGGAGTGTCCCAAGAAATTAGCTCAAAAATTAAGGAAGAGCCCAGAATC
GAACATTTCCTGAAAGTAGTGTTAGTGGAACTATAGGTAGTGTCAGG
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Coding sequence (CDS) from alignment at scaffold_5:1288132..1289628+

>mRNA_2822 ID=mRNA_2822|Name=jgi.p|Nanoce1779_2|341214|organism=Nannochloropsis oceanica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_5:1288132..1289628+ (Nannochloropsis oceanica)
ATGATATCTCATATCCCCGTCGAAGTCAAGAAATTTTGTGAATTTCTTTC
TAGTCGATATATCCTTCGTCATCTGGTCCTTGCATGCATCGGAATGTATT
TCATGACGGTCTGGATGGAAGGTTCCATATCCATCACACATTCTGATTAT
CGTGCCTTCGAACAGCTGGGATCAGCTTTAATTTCCCCCGGAGTACTCGA
ACCTGCATACATTCAATTATGGCCAACAATTTCACACCTACCGTGCAATT
TGACGCTCATACAGACTGGACCATTATCAGGTTTCCTTGAACATAGTGGA
AATTGTCAAGGGTTCATCGCAAGCGTGATTTTGATTAATGTTGAGAGCGG
TCATCGACAGGCAGCAGAGATTGTCAAGCCCAACAAAATTAATTGGCGGG
TACCGATGGAGAAGATCACCCAGGCGTTGCTCACGCTCTACTCTAACGTG
CTACCCGACGAGCTCTTGCAAGAGGTGGAATGGGTAAAGAATGACACCAT
TCTGTATCACCCCACAATTGTGGCGATCAACGCGTCTGTTATTGATCAGA
TACAAATCGCTGCAAGTATGGCTAAGGATGGCATGAATGGCATGCAGCGT
GGTGATTCAATTATGTGGGAAAAACATATCGTTCGTGGACTCTCCAGGGA
CTTTAATCTGTCTTGCTACCACGCTGCTCAATTCAAAAACATATGGATTG
TCGGGACCTCTGAGAGCCGACGATTGTTCGACCACATATGTTCCGCAATT
TTCAGCACGACCCCAATTTTGGAAAAAACGACGATGACATCGCAATGTGG
CAATATACACTTTGTCAACACCTGCCAATGGGACTGCGGATGTAATTTCA
CCGCATTCTTTGACTCCTTAGGACATGATCGCTCCGGACAATTCATCAGT
GTATCTTGTGGTCTACACAGTGAGTATCTTAAAGGTTCAAGCTATTTAGA
GGTAAGCTTGCATGCATTAAGCGATCGGGCACAGCGCCTCAAACTTAATC
AAACGAGGGTCCAGTTTCGAGTCTCCAACGCAGTTAATCCATTCAAGACT
GTCCCCCAAAAGTTGGCGATCGCGCGAAATAATTTTAGGTATCAAATGTT
TAGAGATATGGCGCTATCGACACTTCTGGCTTCCGATGTCCATATAATAG
ATGCATTTCGAATTTCGGAGCCTGTTTTCGATCTATCCGAAGACCACGTT
CACTTTCCCCCGTGGGTATACGGTGAATTGGCGAGAATATTTTTAAATAG
TCTTTGCGACGTCCAATTCAAAATTTGA
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Synonyms
Publications