jgi.p|Nanoce1779_2|581724, mRNA_2821 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|581724
Unique NamemRNA_2821
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1482
Alignment locationscaffold_5:1285680..1287235 +

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Properties
Property NameValue
TranscriptId581810
TrackFilteredModels2
ProteinId581724
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1285680..1287235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581724gene_2821Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|581724mRNA_2821-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2821CDS_2821Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2821 ID=mRNA_2821|Name=jgi.p|Nanoce1779_2|581724|organism=Nannochloropsis oceanica|type=mRNA|length=1482bp
CAGGACACATATTTCATGAAAGTGCATACAATACCCCGGCGCGCCTATCA
TATGGCAGGAGTGATCGTTGGGTGTTGTTGGTTCACTGTCGGATTGAAGT
TGTTCATGAATACCCTGACTGTCACGTCTCCTTCTGCAAGACCTGTCATC
ATGGCGGCCGAAGTCAAGGATAAAGCCAATCGAGGGGTCGTTCTGTGTGC
GTACGATGCCAAATCGCTTCGCCTTGCATGGATACAGATATCAACGCTGC
GTACCCTATATGGTATGGTGAACGAGTCCTTCATTATATACCATGCAGAT
GAGCTTCGAGAAACGATTGGTGCCAAACTATGGCGGAAACAATTGAAAAC
CATTCCCGGGGTGCAGATACAGAGCTTGGAAACTTGGTACCAGGGGACGT
ACGCATCTGAATTCGGGACTGCACCATTACAAAACTTTCAAGGCTTTTTT
TGTAAACCAGCAGCGCTACTAGCCGCACCATTCGAGAATGTTTTGATGTT
GGATCTAGATGTCATAATCACGGACAACCCCTTTGTGCTCATGAACACCC
CTGATTATTCAAAACAAGGTGCATACTTATTTGCAGATCGTCGGACCCAG
CGACCGGCTAAATATATGAGGAGTTACCGACAACAACTACGCAATATTTC
GAGGCATTTCAATTCGCCTAGAAATCAAACACCCTTTTTAGAGAAGTTGC
CTCCTATGACGAGGTGGAGCTACGATTATGGAGAAAGTGCCGTTGTCTTA
TTCAACAAGACATTGAACAGAGATGCAATGTTGGTACTGGAGAAGATTTT
GGCACCAGACCTATTTAACAGCACTACCAAGTATATATATGGAGACAAAG
AATTATACTGGCAGGCTCTCGTATTTGCAGGCGTCAATGTTTCTCTGAAT
CCTTTAATACCTTCAGAAGTGGGAACTCCAAACAGAAATGATGAAGTTAC
CGTGACGTGTACATCTCACTACGTCTTTGCCCAGTGGCTGTGGCAGCCCT
ATGCAACACCTAAGATATTTTATGTCAACGGAGATGGAATCGAAGAAATG
CTGATGGGAAGGGATCAGACCATCTTGAACTGTACACTCTCAGACCCACT
CGAGTATTACTCTTCACTAACTCAGTATAATACCTTTTGCAACCGTGGTG
CAAATCCGTTACCACAAAATCTCATCGACACGATCTGGGCATATAAAATT
ATGTACAGCAAGTCGTCATCGAAACATCTTAAAGTGTAAATAGAATCACT
ACAGGTAAGGTTAGGTTTGGCTGATTTATCAGGATAACGACGATTCTAGC
ATCATCGTGAACATCACCGCGGAGCACTCTACCTTTGCAATCAAATTATA
AGAGAGGAATTTAAATGCTGGCCGAGACTGCTCCTAAACATTTTTCTATA
TGTAGGAGGCGTGGAACTTGGACCAAGTTCCTCCGTTCCGATCCTTCCAC
AACGCCACAAAGTCAACCAAATAGCCAAAGCT
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protein sequence of jgi.p|Nanoce1779_2|581724

>mRNA_2821-protein ID=mRNA_2821-protein|Name=jgi.p|Nanoce1779_2|581724|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MKVHTIPRRAYHMAGVIVGCCWFTVGLKLFMNTLTVTSPSARPVIMAAEV
KDKANRGVVLCAYDAKSLRLAWIQISTLRTLYGMVNESFIIYHADELRET
IGAKLWRKQLKTIPGVQIQSLETWYQGTYASEFGTAPLQNFQGFFCKPAA
LLAAPFENVLMLDLDVIITDNPFVLMNTPDYSKQGAYLFADRRTQRPAKY
MRSYRQQLRNISRHFNSPRNQTPFLEKLPPMTRWSYDYGESAVVLFNKTL
NRDAMLVLEKILAPDLFNSTTKYIYGDKELYWQALVFAGVNVSLNPLIPS
EVGTPNRNDEVTVTCTSHYVFAQWLWQPYATPKIFYVNGDGIEEMLMGRD
QTILNCTLSDPLEYYSSLTQYNTFCNRGANPLPQNLIDTIWAYKIMYSKS
SSKHLKV*
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mRNA from alignment at scaffold_5:1285680..1287235+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2821 ID=mRNA_2821|Name=jgi.p|Nanoce1779_2|581724|organism=Nannochloropsis oceanica|type=mRNA|length=1556bp|location=Sequence derived from alignment at scaffold_5:1285680..1287235+ (Nannochloropsis oceanica)
CAGGACACATATTTCATGAAAGTGCATACAATACCCCGGCGCGCCTATCA
TATGGCAGGAGTGATCGTTGGGTGTTGTTGGTTCACTGTCGGATTGAAGT
TGTTCATGAATACCCTGACTGTCACGTCTCCTTCTGCAAGACCTGTCATC
ATGGCGGCCGAAGTCAAGGATAAAGCCAATCGAGGGGTCGTTCTGTGTGC
GTACGATGCCAAATCGCTTCGCCTTGCATGGATACAGGTGAGGAAAAATC
TGTGCTTCTTCACTTGCCCTTTCTTGCGAGCTCATAATCTATCCCTTTCT
TCCAACCGGAGATATCAACGCTGCGTACCCTATATGGTATGGTGAACGAG
TCCTTCATTATATACCATGCAGATGAGCTTCGAGAAACGATTGGTGCCAA
ACTATGGCGGAAACAATTGAAAACCATTCCCGGGGTGCAGATACAGAGCT
TGGAAACTTGGTACCAGGGGACGTACGCATCTGAATTCGGGACTGCACCA
TTACAAAACTTTCAAGGCTTTTTTTGTAAACCAGCAGCGCTACTAGCCGC
ACCATTCGAGAATGTTTTGATGTTGGATCTAGATGTCATAATCACGGACA
ACCCCTTTGTGCTCATGAACACCCCTGATTATTCAAAACAAGGTGCATAC
TTATTTGCAGATCGTCGGACCCAGCGACCGGCTAAATATATGAGGAGTTA
CCGACAACAACTACGCAATATTTCGAGGCATTTCAATTCGCCTAGAAATC
AAACACCCTTTTTAGAGAAGTTGCCTCCTATGACGAGGTGGAGCTACGAT
TATGGAGAAAGTGCCGTTGTCTTATTCAACAAGACATTGAACAGAGATGC
AATGTTGGTACTGGAGAAGATTTTGGCACCAGACCTATTTAACAGCACTA
CCAAGTATATATATGGAGACAAAGAATTATACTGGCAGGCTCTCGTATTT
GCAGGCGTCAATGTTTCTCTGAATCCTTTAATACCTTCAGAAGTGGGAAC
TCCAAACAGAAATGATGAAGTTACCGTGACGTGTACATCTCACTACGTCT
TTGCCCAGTGGCTGTGGCAGCCCTATGCAACACCTAAGATATTTTATGTC
AACGGAGATGGAATCGAAGAAATGCTGATGGGAAGGGATCAGACCATCTT
GAACTGTACACTCTCAGACCCACTCGAGTATTACTCTTCACTAACTCAGT
ATAATACCTTTTGCAACCGTGGTGCAAATCCGTTACCACAAAATCTCATC
GACACGATCTGGGCATATAAAATTATGTACAGCAAGTCGTCATCGAAACA
TCTTAAAGTGTAAATAGAATCACTACAGGTAAGGTTAGGTTTGGCTGATT
TATCAGGATAACGACGATTCTAGCATCATCGTGAACATCACCGCGGAGCA
CTCTACCTTTGCAATCAAATTATAAGAGAGGAATTTAAATGCTGGCCGAG
ACTGCTCCTAAACATTTTTCTATATGTAGGAGGCGTGGAACTTGGACCAA
GTTCCTCCGTTCCGATCCTTCCACAACGCCACAAAGTCAACCAAATAGCC
AAAGCT
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Coding sequence (CDS) from alignment at scaffold_5:1285680..1287235+

>mRNA_2821 ID=mRNA_2821|Name=jgi.p|Nanoce1779_2|581724|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_5:1285680..1287235+ (Nannochloropsis oceanica)
ATGAAAGTGCATACAATACCCCGGCGCGCCTATCATATGGCAGGAGTGAT
CGTTGGGTGTTGTTGGTTCACTGTCGGATTGAAGTTGTTCATGAATACCC
TGACTGTCACGTCTCCTTCTGCAAGACCTGTCATCATGGCGGCCGAAGTC
AAGGATAAAGCCAATCGAGGGGTCGTTCTGTGTGCGTACGATGCCAAATC
GCTTCGCCTTGCATGGATACAGATATCAACGCTGCGTACCCTATATGGTA
TGGTGAACGAGTCCTTCATTATATACCATGCAGATGAGCTTCGAGAAACG
ATTGGTGCCAAACTATGGCGGAAACAATTGAAAACCATTCCCGGGGTGCA
GATACAGAGCTTGGAAACTTGGTACCAGGGGACGTACGCATCTGAATTCG
GGACTGCACCATTACAAAACTTTCAAGGCTTTTTTTGTAAACCAGCAGCG
CTACTAGCCGCACCATTCGAGAATGTTTTGATGTTGGATCTAGATGTCAT
AATCACGGACAACCCCTTTGTGCTCATGAACACCCCTGATTATTCAAAAC
AAGGTGCATACTTATTTGCAGATCGTCGGACCCAGCGACCGGCTAAATAT
ATGAGGAGTTACCGACAACAACTACGCAATATTTCGAGGCATTTCAATTC
GCCTAGAAATCAAACACCCTTTTTAGAGAAGTTGCCTCCTATGACGAGGT
GGAGCTACGATTATGGAGAAAGTGCCGTTGTCTTATTCAACAAGACATTG
AACAGAGATGCAATGTTGGTACTGGAGAAGATTTTGGCACCAGACCTATT
TAACAGCACTACCAAGTATATATATGGAGACAAAGAATTATACTGGCAGG
CTCTCGTATTTGCAGGCGTCAATGTTTCTCTGAATCCTTTAATACCTTCA
GAAGTGGGAACTCCAAACAGAAATGATGAAGTTACCGTGACGTGTACATC
TCACTACGTCTTTGCCCAGTGGCTGTGGCAGCCCTATGCAACACCTAAGA
TATTTTATGTCAACGGAGATGGAATCGAAGAAATGCTGATGGGAAGGGAT
CAGACCATCTTGAACTGTACACTCTCAGACCCACTCGAGTATTACTCTTC
ACTAACTCAGTATAATACCTTTTGCAACCGTGGTGCAAATCCGTTACCAC
AAAATCTCATCGACACGATCTGGGCATATAAAATTATGTACAGCAAGTCG
TCATCGAAACATCTTAAAGTGTAAATGAAAGTGCATACAATACCCCGGCG
CGCCTATCATATGGCAGGAGTGATCGTTGGGTGTTGTTGGTTCACTGTCG
GATTGAAGTTGTTCATGAATACCCTGACTGTCACGTCTCCTTCTGCAAGA
CCTGTCATCATGGCGGCCGAAGTCAAGGATAAAGCCAATCGAGGGGTCGT
TCTGTGTGCGTACGATGCCAAATCGCTTCGCCTTGCATGGATACAGATAT
CAACGCTGCGTACCCTATATGGTATGGTGAACGAGTCCTTCATTATATAC
CATGCAGATGAGCTTCGAGAAACGATTGGTGCCAAACTATGGCGGAAACA
ATTGAAAACCATTCCCGGGGTGCAGATACAGAGCTTGGAAACTTGGTACC
AGGGGACGTACGCATCTGAATTCGGGACTGCACCATTACAAAACTTTCAA
GGCTTTTTTTGTAAACCAGCAGCGCTACTAGCCGCACCATTCGAGAATGT
TTTGATGTTGGATCTAGATGTCATAATCACGGACAACCCCTTTGTGCTCA
TGAACACCCCTGATTATTCAAAACAAGGTGCATACTTATTTGCAGATCGT
CGGACCCAGCGACCGGCTAAATATATGAGGAGTTACCGACAACAACTACG
CAATATTTCGAGGCATTTCAATTCGCCTAGAAATCAAACACCCTTTTTAG
AGAAGTTGCCTCCTATGACGAGGTGGAGCTACGATTATGGAGAAAGTGCC
GTTGTCTTATTCAACAAGACATTGAACAGAGATGCAATGTTGGTACTGGA
GAAGATTTTGGCACCAGACCTATTTAACAGCACTACCAAGTATATATATG
GAGACAAAGAATTATACTGGCAGGCTCTCGTATTTGCAGGCGTCAATGTT
TCTCTGAATCCTTTAATACCTTCAGAAGTGGGAACTCCAAACAGAAATGA
TGAAGTTACCGTGACGTGTACATCTCACTACGTCTTTGCCCAGTGGCTGT
GGCAGCCCTATGCAACACCTAAGATATTTTATGTCAACGGAGATGGAATC
GAAGAAATGCTGATGGGAAGGGATCAGACCATCTTGAACTGTACACTCTC
AGACCCACTCGAGTATTACTCTTCACTAACTCAGTATAATACCTTTTGCA
ACCGTGGTGCAAATCCGTTACCACAAAATCTCATCGACACGATCTGGGCA
TATAAAATTATGTACAGCAAGTCGTCATCGAAACATCTTAAAGTGTAA
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Synonyms
Publications