jgi.p|Nanoce1779_2|576797, mRNA_282 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576797
Unique NamemRNA_282
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length525
Alignment locationscaffold_3:697839..698363 -

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Properties
Property NameValue
TranscriptId576883
TrackFilteredModels2
ProteinId576797
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:697839..698363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576797gene_282Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576797mRNA_282-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_282CDS_282Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_282 ID=mRNA_282|Name=jgi.p|Nanoce1779_2|576797|organism=Nannochloropsis oceanica|type=mRNA|length=525bp
TTCAGAAATGTGGGAGTACTTTTTTTTTGCATCGTTTCTTAACCGTTATG
TCATAGTTGGTCGTTCTAGACTCGTATTGTTTAGTTGTTGGTTGCGTTTG
TGCAGGTGGGGAGATTGAATGTGGGCCGTTGGCGCCTTGTGTGTGAGGTG
GCCCTTGTGTGTGGTCGAGGCACATTTAAGATCAGCCTACGATAATTGGC
AAATGGTCGCCCTGTGCAACTTGAATTCGACACGTGTAGGCCACCACTTC
CTCAAGGTCAAAGCTAGGGCTGCTGGCACAAGAGAGACAAAAGATACTCA
CGTTGCTGTGGTCTTGTACACTCCAGCCACTTCAGCACCCACAAAAGGCA
ACCCTTAGGTACTGGACATGCATAAGCGCTGTGGACTTTCACATATGATC
TCTTCACTCATTTCATCTTTTCCCCTCCCCCAATACACTCCCAAAGGGCG
GCACCGCGCAGTGGTAATGTCCCGGCGGGCGGTCTCCACGTTCGTCATGA
CGACTTGCCTGCTCCTTCTGCAGAG
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protein sequence of jgi.p|Nanoce1779_2|576797

>mRNA_282-protein ID=mRNA_282-protein|Name=jgi.p|Nanoce1779_2|576797|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MWAVGALCVRWPLCVVEAHLRSAYDNWQMVALCNLNSTRVGHHFLKVKAR
AAGTRETKDTHVAVVLYTPATSAPTKGNP*
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mRNA from alignment at scaffold_3:697839..698363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_282 ID=mRNA_282|Name=jgi.p|Nanoce1779_2|576797|organism=Nannochloropsis oceanica|type=mRNA|length=525bp|location=Sequence derived from alignment at scaffold_3:697839..698363- (Nannochloropsis oceanica)
TTCAGAAATGTGGGAGTACTTTTTTTTTGCATCGTTTCTTAACCGTTATG
TCATAGTTGGTCGTTCTAGACTCGTATTGTTTAGTTGTTGGTTGCGTTTG
TGCAGGTGGGGAGATTGAATGTGGGCCGTTGGCGCCTTGTGTGTGAGGTG
GCCCTTGTGTGTGGTCGAGGCACATTTAAGATCAGCCTACGATAATTGGC
AAATGGTCGCCCTGTGCAACTTGAATTCGACACGTGTAGGCCACCACTTC
CTCAAGGTCAAAGCTAGGGCTGCTGGCACAAGAGAGACAAAAGATACTCA
CGTTGCTGTGGTCTTGTACACTCCAGCCACTTCAGCACCCACAAAAGGCA
ACCCTTAGGTACTGGACATGCATAAGCGCTGTGGACTTTCACATATGATC
TCTTCACTCATTTCATCTTTTCCCCTCCCCCAATACACTCCCAAAGGGCG
GCACCGCGCAGTGGTAATGTCCCGGCGGGCGGTCTCCACGTTCGTCATGA
CGACTTGCCTGCTCCTTCTGCAGAG
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Coding sequence (CDS) from alignment at scaffold_3:697839..698363-

>mRNA_282 ID=mRNA_282|Name=jgi.p|Nanoce1779_2|576797|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_3:697839..698363- (Nannochloropsis oceanica)
ATGTGGGCCGTTGGCGCCTTGTGTGTGAGGTGGCCCTTGTGTGTGGTCGA
GGCACATTTAAGATCAGCCTACGATAATTGGCAAATGGTCGCCCTGTGCA
ACTTGAATTCGACACGTGTAGGCCACCACTTCCTCAAGGTCAAAGCTAGG
GCTGCTGGCACAAGAGAGACAAAAGATACTCACGTTGCTGTGGTCTTGTA
CACTCCAGCCACTTCAGCACCCACAAAAGGCAACCCTTAG
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Synonyms
Publications